View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4974_high_3 (Length: 412)
Name: NF4974_high_3
Description: NF4974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4974_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 7127935 - 7128324
Alignment:
| Q |
1 |
ttatgtgattttctcaaattattgagtgtcaatgtatctgagtggtctagtgtctgtccatttattgacaccagacacatatcagataccagacacacct |
100 |
Q |
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| T |
7127935 |
ttatgtcattttctcaaattattaagtgtcaatgtatctgagtggtctagtgtc----catttattgacatcagacacatatcagataccagacacacct |
7128030 |
T |
|
| Q |
101 |
tcggtcagagacgtagacgtggttgattgaaaattgaaatgaaaaaatgataatgaaagaagtattaccgagatgagagttgatgaggcggttatcatcg |
200 |
Q |
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| T |
7128031 |
tcgatc-gatcag-agacgtggttgattgaaaattgaaatgaaaaaatgataatgaaagaagtattaccgagatgagagttgatgaggcggttatcatcg |
7128128 |
T |
|
| Q |
201 |
ggaagagagagtgaacaaacggggcagataacgacgtcattttcgagggagtcgctaccggctgtagtaggttgttccggttgctggtgtgagagaggaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7128129 |
ggaagagagagtgaacaaacggggcagataacgacgtcattttcgagggagtcgctaccggctgtagtaggttgttccggttgctggtgtgacagaggaa |
7128228 |
T |
|
| Q |
301 |
tgggatcggagaggatagaatgacgattgggaaggaaacgacgacgttttccgattaatcgaatcaaactttctctgccgctaagtaccattgttg |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7128229 |
tgggatcggagaggatagaatgacgattgggaaggaaacgacgacgttttccgattgatcgaatcaaactttctctgccgctaagtaccattgttg |
7128324 |
T |
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