View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4974_high_6 (Length: 318)

Name: NF4974_high_6
Description: NF4974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4974_high_6
NF4974_high_6
[»] chr5 (17 HSPs)
chr5 (10-244)||(36235672-36235906)
chr5 (91-225)||(26724110-26724244)
chr5 (88-227)||(39058490-39058629)
chr5 (125-244)||(5459154-5459272)
chr5 (89-244)||(19343549-19343704)
chr5 (88-227)||(38948519-38948658)
chr5 (117-227)||(16089710-16089820)
chr5 (113-227)||(14820448-14820562)
chr5 (121-237)||(38607325-38607442)
chr5 (174-242)||(15070000-15070068)
chr5 (129-227)||(30403601-30403697)
chr5 (112-165)||(3746693-3746746)
chr5 (128-193)||(26188825-26188889)
chr5 (129-193)||(21114606-21114670)
chr5 (83-142)||(5459042-5459101)
chr5 (124-190)||(4907027-4907093)
chr5 (90-147)||(458553-458610)
[»] chr4 (19 HSPs)
chr4 (86-237)||(40390884-40391034)
chr4 (122-227)||(33609974-33610079)
chr4 (87-223)||(6449707-6449843)
chr4 (84-224)||(15025769-15025910)
chr4 (122-243)||(22593301-22593422)
chr4 (170-244)||(20403236-20403311)
chr4 (129-244)||(14806131-14806246)
chr4 (88-206)||(15882185-15882303)
chr4 (86-211)||(11672553-11672677)
chr4 (113-222)||(26081197-26081306)
chr4 (90-147)||(24367823-24367880)
chr4 (112-165)||(35574353-35574406)
chr4 (188-244)||(38377891-38377947)
chr4 (124-186)||(33894459-33894521)
chr4 (88-225)||(31050010-31050147)
chr4 (124-165)||(38377840-38377881)
chr4 (124-193)||(47472218-47472286)
chr4 (197-237)||(784112-784152)
chr4 (122-190)||(10573982-10574050)
[»] chr7 (16 HSPs)
chr7 (90-237)||(40751654-40751801)
chr7 (88-244)||(11297754-11297911)
chr7 (88-237)||(25067648-25067797)
chr7 (113-225)||(30851671-30851783)
chr7 (88-225)||(27567701-27567838)
chr7 (89-244)||(20132051-20132206)
chr7 (145-244)||(13009380-13009480)
chr7 (129-244)||(12925250-12925365)
chr7 (112-244)||(28098552-28098683)
chr7 (87-165)||(28555276-28555354)
chr7 (129-190)||(34471260-34471321)
chr7 (74-152)||(33991809-33991887)
chr7 (90-198)||(20462955-20463063)
chr7 (86-237)||(39596763-39596922)
chr7 (113-243)||(7379088-7379217)
chr7 (113-179)||(21367191-21367257)
[»] chr8 (19 HSPs)
chr8 (88-244)||(12596850-12597006)
chr8 (113-227)||(26938637-26938751)
chr8 (88-244)||(17219719-17219878)
chr8 (88-244)||(24916055-24916209)
chr8 (88-217)||(26938908-26939035)
chr8 (129-237)||(33038252-33038360)
chr8 (88-206)||(17153534-17153652)
chr8 (125-243)||(24292197-24292315)
chr8 (124-225)||(10467519-10467620)
chr8 (113-244)||(33695143-33695273)
chr8 (88-213)||(17157024-17157149)
chr8 (138-226)||(32796979-32797067)
chr8 (93-200)||(16483745-16483851)
chr8 (139-224)||(39344630-39344715)
chr8 (118-190)||(30743918-30743990)
chr8 (113-224)||(15966447-15966558)
chr8 (112-244)||(42024002-42024133)
chr8 (140-211)||(8026065-8026136)
chr8 (129-193)||(43651397-43651461)
[»] chr2 (19 HSPs)
chr2 (112-244)||(855585-855717)
chr2 (113-237)||(6191111-6191235)
chr2 (91-244)||(10077604-10077758)
chr2 (124-237)||(8794609-8794718)
chr2 (89-226)||(29242597-29242732)
chr2 (88-226)||(27694548-27694686)
chr2 (88-206)||(24490606-24490724)
chr2 (88-242)||(34904007-34904161)
chr2 (122-218)||(35954254-35954350)
chr2 (88-244)||(39293127-39293282)
chr2 (89-225)||(30641060-30641196)
chr2 (124-227)||(31994756-31994859)
chr2 (89-153)||(17448895-17448959)
chr2 (112-153)||(37284289-37284330)
chr2 (122-206)||(30632591-30632675)
chr2 (122-206)||(30669060-30669144)
chr2 (125-179)||(11711228-11711282)
chr2 (140-206)||(30666668-30666734)
chr2 (124-236)||(434544-434657)
[»] scaffold0020 (1 HSPs)
scaffold0020 (113-237)||(152193-152317)
[»] chr6 (13 HSPs)
chr6 (88-244)||(10516586-10516741)
chr6 (113-225)||(30465192-30465304)
chr6 (88-214)||(24672266-24672392)
chr6 (89-244)||(17957027-17957182)
chr6 (124-244)||(6197842-6197962)
chr6 (89-226)||(3807066-3807203)
chr6 (90-236)||(12611793-12611937)
chr6 (88-198)||(25042896-25043005)
chr6 (121-231)||(10311667-10311777)
chr6 (88-192)||(17158490-17158594)
chr6 (91-198)||(4405837-4405943)
chr6 (94-232)||(3336014-3336152)
chr6 (129-165)||(14896838-14896874)
[»] chr1 (12 HSPs)
chr1 (88-225)||(20985924-20986061)
chr1 (78-244)||(16545426-16545591)
chr1 (112-225)||(13392830-13392944)
chr1 (88-229)||(33752991-33753131)
chr1 (121-188)||(37471004-37471071)
chr1 (90-199)||(1444962-1445070)
chr1 (119-211)||(29102864-29102956)
chr1 (129-225)||(50919316-50919411)
chr1 (129-224)||(3891483-3891575)
chr1 (122-243)||(15800839-15800959)
chr1 (183-244)||(37470922-37470983)
chr1 (87-135)||(1850637-1850685)
[»] chr3 (15 HSPs)
chr3 (88-242)||(34359327-34359481)
chr3 (89-244)||(44446868-44447023)
chr3 (88-226)||(20314884-20315022)
chr3 (88-244)||(39340767-39340921)
chr3 (88-244)||(28769522-28769676)
chr3 (90-243)||(50334650-50334805)
chr3 (88-179)||(20336777-20336868)
chr3 (124-226)||(22853406-22853506)
chr3 (129-186)||(13899501-13899558)
chr3 (127-227)||(45743765-45743865)
chr3 (145-211)||(16876437-16876503)
chr3 (113-210)||(51471202-51471299)
chr3 (88-157)||(16876078-16876145)
chr3 (88-165)||(52423006-52423081)
chr3 (129-165)||(16607667-16607703)
[»] scaffold0720 (1 HSPs)
scaffold0720 (89-225)||(5500-5636)
[»] scaffold0233 (1 HSPs)
scaffold0233 (83-227)||(16956-17100)
[»] scaffold0005 (2 HSPs)
scaffold0005 (113-244)||(253762-253892)
scaffold0005 (129-244)||(33481-33596)
[»] scaffold0036 (1 HSPs)
scaffold0036 (146-225)||(48461-48540)
[»] scaffold1911 (1 HSPs)
scaffold1911 (112-206)||(1-95)
[»] scaffold0478 (2 HSPs)
scaffold0478 (88-206)||(8596-8714)
scaffold0478 (88-206)||(3218-3335)
[»] scaffold0002 (1 HSPs)
scaffold0002 (129-244)||(363088-363203)
[»] scaffold0264 (1 HSPs)
scaffold0264 (112-190)||(19796-19874)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 36235672 - 36235906
Alignment:
Q  10 taattctctttgacaaataagtggatgaagatcaaggaaagatcaagaagggattgagtaggggataaaagagaaaaaggttaaatatgttcttaatctc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  36235672 taattctctttgacaaataagtggatgaagatcaaggaaagatcaagaagggattgagtaggggataaaagagaaaaaggttaaatatgttcttagtcta 36235771  T
Q  110 tgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaa 209  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36235772 tgcaaaattatgagttttcaaatttaattcctataaaattttaagggtaattttagccctccataatattttagtttgtaagaacagtccccattttaaa 36235871  T
Q  210 aactttttacaaaaaatgaatatttttattcctcc 244  Q
    ||||||||| |||||||||||||||||||||||||    
T  36235872 aactttttataaaaaatgaatatttttattcctcc 36235906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 225
Target Start/End: Original strand, 26724110 - 26724244
Alignment:
Q  91 taaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaa 190  Q
    |||||||||| ||| || || |||||| | |||||||| |||||||| ||||||||||||||| ||||||||||| | ||||||  ||| || ||| |||    
T  26724110 taaatatgtttttagtccctacaaaatcacgagttttcgagtttagtccctataaaattttaatggtaattttagtcgtccatagaattgtaatttataa 26724209  T
Q  191 gaacagtccccattttaaaaactttttacaaaaaa 225  Q
    |||||||||| ||||| ||||||||||||||||||    
T  26724210 gaacagtccctattttgaaaactttttacaaaaaa 26724244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 39058629 - 39058490
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| |||||| ||  ||||| |  |||||| |||||||   ||||||||||||||| ||||||||||| | ||||||| ||| |||||||    
T  39058629 ggttaaatatgtttttaatccctataaaatcacaagtttttaagtttaacccctataaaattttaatggtaattttagtcctccataacattgtagtttg 39058530  T
Q  188 taagaacagtccccattttaaaaactttttacaaaaaatg 227  Q
    |||||| |||||  ||||| ||||||||||||||| ||||    
T  39058529 taagaatagtccttattttgaaaactttttacaaacaatg 39058490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 125 - 244
Target Start/End: Complemental strand, 5459272 - 5459154
Alignment:
Q  125 tttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaaa 224  Q
    ||||||||||||| ||||||||||||||| ||||| ||||| | | ||||||||| |||||| ||||||  ||||| |||||  ||| ||| ||||||||    
T  5459272 tttcaagtttagtccctataaaattttaatggtaaatttagtccttcataatattatagtttataagaa-tgtccctattttttaaattttctacaaaaa 5459174  T
Q  225 atgaatatttttattcctcc 244  Q
    ||||||| ||||||||||||    
T  5459173 atgaatacttttattcctcc 5459154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 244
Target Start/End: Original strand, 19343549 - 19343704
Alignment:
Q  89 gttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgt 188  Q
    |||||||||||| ||| |  || |||||| ||||||||| |||||||||  |||||||||||||  | ||||||||| | |  | |||||| ||||||||    
T  19343549 gttaaatatgtttttagtacctacaaaatcatgagtttttaagtttagtctctataaaattttagtgataattttagtcctaaaaaatattgtagtttgt 19343648  T
Q  189 aagaacagtccccattttaaaaactttttacaaaaaatgaatatttttattcctcc 244  Q
    || || ||| |  |||||||||||||||||||||||||  ||| ||||| ||||||    
T  19343649 aaaaatagttcatattttaaaaactttttacaaaaaatagataattttagtcctcc 19343704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 38948519 - 38948658
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    |||||||||||||| |||||||| |||||| |  ||||||||| ||||||   ||||||||||||| | ||||||||| | | |||||| |  ||||||     
T  38948519 ggttaaatatgttcctaatctctacaaaatcacaagttttcaaatttagtctatataaaattttaatgataattttagtccttcataatttagtagttta 38948618  T
Q  188 taagaacagtccccattttaaaaactttttacaaaaaatg 227  Q
    |||||  ||| |  ||||||||||||||||||||||||||    
T  38948619 taagattagttcatattttaaaaactttttacaaaaaatg 38948658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 16089710 - 16089820
Alignment:
Q  117 ttatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttt 216  Q
    ||||||||||| ||||||||| || ||||||||||||  |||||||||| | |  | |||||| ||||||||||||| |||| |  |||| |||||||||    
T  16089710 ttatgagtttttaagtttagtcccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgtaagaatagtctctgtttttaaaactttt 16089809  T
Q  217 tacaaaaaatg 227  Q
    |||||||||||    
T  16089810 tacaaaaaatg 16089820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 14820562 - 14820448
Alignment:
Q  113 aaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaac 212  Q
    ||||| || |||||||||||||||| | || |||||||||  |||||||||| || || |||||| | |||||||||| || | |||  |||||||||||    
T  14820562 aaaatcataagttttcaagtttagtccttacaaaattttagtggtaattttaaccctctataataatgtagtttgtaaaaataatccatattttaaaaac 14820463  T
Q  213 tttttacaaaaaatg 227  Q
    |||||| ||||||||    
T  14820462 tttttataaaaaatg 14820448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 38607325 - 38607442
Alignment:
Q  121 gagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaacttttta-c 219  Q
    ||||||| |||||||||| ||||||||||||||  |||||||||| | | ||||||||| |||||| | |||| |||||  ||||| ||||||| ||| |    
T  38607325 gagtttttaagtttagtttctataaaattttaattgtaattttagtccttcataatattgtagttttttagaatagtccttattttgaaaacttgttacc 38607424  T
Q  220 aaaaaatgaatattttta 237  Q
    |||||||  |||||||||    
T  38607425 aaaaaatatatattttta 38607442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 15070000 - 15070068
Alignment:
Q  174 aatattttagtttgtaagaacagtccccattttaaaaactttttacaaaaaatgaatatttttattcct 242  Q
    |||||| |||||||||| || |||| | ||||| |||||||||||||||||||| ||||||||| ||||    
T  15070000 aatattgtagtttgtaataatagtctcgattttgaaaactttttacaaaaaatggatatttttagtcct 15070068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 30403697 - 30403601
Alignment:
Q  129 aagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaaaatg 227  Q
    |||||||||| |||||||||||||||| ||||||||  |||| ||   || | |||||||||||| ||||   ||||||||||||||||||||||||||    
T  30403697 aagtttagtttctataaaattttaagg-taattttaatcttctattccatat-agtttgtaagaatagtcattattttaaaaactttttacaaaaaatg 30403601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 3746693 - 3746746
Alignment:
Q  112 caaaattatgagttttcaagtttagttcctataaaattttaagggtaattttag 165  Q
    |||||||| ||||||| || |||||||||||||||||||||| | |||||||||    
T  3746693 caaaattacgagtttttaaatttagttcctataaaattttaatgctaattttag 3746746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 26188889 - 26188825
Alignment:
Q  128 caagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaa 193  Q
    ||||||||||||||||||| ||||||  |||||||||| | ||||| ||||| |||||||||||||    
T  26188889 caagtttagttcctataaa-ttttaatagtaattttagtcatccatcatattgtagtttgtaagaa 26188825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 21114606 - 21114670
Alignment:
Q  129 aagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaa 193  Q
    |||||||||| ||| |||||||||| | ||||||||| |  |||||||||| |||||||||||||    
T  21114606 aagtttagtttctagaaaattttaatgataattttagtccaccataatattgtagtttgtaagaa 21114670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 5459042 - 5459101
Alignment:
Q  83 aaaaaggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttccta 142  Q
    |||||||||||||||||| ||| |||||  |||||||| |||||| ||||||||| ||||    
T  5459042 aaaaaggttaaatatgtttttagtctctataaaattataagtttttaagtttagtcccta 5459101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 4907027 - 4907093
Alignment:
Q  124 ttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaa 190  Q
    |||||||||||| |||  ||||||| |||| ||||||||||| |||| | |||||| ||||||||||    
T  4907027 ttttcaagtttacttcaaataaaatattaacggtaattttagtcttctaaaatattgtagtttgtaa 4907093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 458610 - 458553
Alignment:
Q  90 ttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaa 147  Q
    ||||||||||| |||||| ||||||||||||||| ||| |||||| ||  ||||||||    
T  458610 ttaaatatgtttttaatccctgcaaaattatgagcttttaagttttgtctctataaaa 458553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 86 - 237
Target Start/End: Original strand, 40390884 - 40391034
Alignment:
Q  86 aaggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtt 185  Q
    ||||||||||||||| ||| || || |||||| ||||||||||||||||||||||||||||||||||| | ||||||||| | ||||| ||||| |||||    
T  40390884 aaggttaaatatgtttttagtccctacaaaatcatgagttttcaagtttagttcctataaaattttaatgataattttagtcctccat-atattgtagtt 40390982  T
Q  186 tgtaagaacagtccccattttaaaaactttttacaaaaaatgaatattttta 237  Q
    |||||||| |||| | ||||| ||||| |||||||||||||||||| |||||    
T  40390983 tgtaagaatagtctctatttttaaaacattttacaaaaaatgaatactttta 40391034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 227
Target Start/End: Original strand, 33609974 - 33610079
Alignment:
Q  122 agttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaa 221  Q
    |||||| ||||||||||| ||||||||||||| ||||||||||   || ||||||||| |||||| |||||| |||||  ||||| |||||||||| |||    
T  33609974 agtttttaagtttagttcttataaaattttaatggtaattttaatttttcataatattgtagtttataagaatagtccttattttgaaaactttttgcaa 33610073  T
Q  222 aaaatg 227  Q
    ||||||    
T  33610074 aaaatg 33610079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 87 - 223
Target Start/End: Complemental strand, 6449843 - 6449707
Alignment:
Q  87 aggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagttt 186  Q
    ||||||||||| || |||||  || |||||| | ||||||||||||||| | || |||||||||||| | |||||||||  ||  |||||| | ||||||    
T  6449843 aggttaaatatatttttaattcctacaaaatcacgagttttcaagtttaatgcccataaaattttaatgataattttagttttttataataatgtagttt 6449744  T
Q  187 gtaagaacagtccccattttaaaaactttttacaaaa 223  Q
    |||| || |||||| |||||||||||||||| |||||    
T  6449743 gtaaaaatagtccctattttaaaaactttttgcaaaa 6449707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 224
Target Start/End: Original strand, 15025769 - 15025910
Alignment:
Q  84 aaaaggttaaatatgttcttaa-tctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatatttta 182  Q
    |||||||||||||| || || | || || |||||| | ||||| | ||||||||||| ||||||||||||| ||||||||||  | || | |||||| ||    
T  15025769 aaaaggttaaatatattttttagtccctacaaaatcacgagttattaagtttagttcttataaaattttaatggtaattttaatcctctaaaatattata 15025868  T
Q  183 gtttgtaagaacagtccccattttaaaaactttttacaaaaa 224  Q
    |||||| | || |||||| ||||| |||||||||||||||||    
T  15025869 gtttgtgataatagtccctattttgaaaactttttacaaaaa 15025910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 243
Target Start/End: Complemental strand, 22593422 - 22593301
Alignment:
Q  122 agttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaa 221  Q
    ||||||||||||||||| |||| ||||||||| ||| ||||||| |||| | |||||  |||||||||| || ||||||  ||||||||||||  ||||     
T  22593422 agttttcaagtttagtttctattaaattttaatggtgattttagtcttctacaatatcatagtttgtaaaaatagtcccttttttaaaaacttgatacat 22593323  T
Q  222 aaaatgaatatttttattcctc 243  Q
    |||||  ||||||||| |||||    
T  22593322 aaaattgatatttttagtcctc 22593301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 20403236 - 20403311
Alignment:
Q  170 ccataatattttagtttgtaagaacagtccccattttaaaaactttttac-aaaaaatgaatatttttattcctcc 244  Q
    |||||||||| ||||||||||||| |||||| | | |||||||||||||| |||||||| ||||||||||||||||    
T  20403236 ccataatattatagtttgtaagaatagtccctaatctaaaaactttttacaaaaaaatggatatttttattcctcc 20403311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 14806131 - 14806246
Alignment:
Q  129 aagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaaaatga 228  Q
    ||||||||||||||||||||||||| | |||||||||   |||| || ||| || ||| ||| || | ||| |||||| | |||||||||||||||||      
T  14806131 aagtttagttcctataaaattttaatgataattttagttctccaaaaaattataatttttaataataatcctcatttttataactttttacaaaaaatag 14806230  T
Q  229 atatttttattcctcc 244  Q
    ||||||||| ||||||    
T  14806231 atatttttagtcctcc 14806246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 206
Target Start/End: Complemental strand, 15882303 - 15882185
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||| || || |||||| ||||||||| ||| ||||| ||||| ||||||||| ||||||||||| | |||| | ||||  ||||||    
T  15882303 ggttaaatatgtttttagtccctacaaaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcctccaaactattcaagtttg 15882204  T
Q  188 taagaacagtccccatttt 206  Q
    | | || |||||| |||||    
T  15882203 ttaaaatagtccctatttt 15882185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 211
Target Start/End: Complemental strand, 11672677 - 11672553
Alignment:
Q  86 aaggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtt 185  Q
    ||||||||||||||| |||||| || ||||||| | ||||||||| ||||| |||||||||||||| |  |||||||||    | || ||| || |||||    
T  11672677 aaggttaaatatgtttttaatcactacaaaattgtaagttttcaattttag-tcctataaaatttttatcgtaattttatttcttcaaaattttgtagtt 11672579  T
Q  186 tgtaagaacagtccccattttaaaaa 211  Q
    |||||||| |||| | ||||||||||    
T  11672578 tgtaagaatagtctctattttaaaaa 11672553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 26081306 - 26081197
Alignment:
Q  113 aaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaac 212  Q
    ||||||| |||||||||| ||||||| | |||||||||||  | ||||||||  | |||| ||||||  ||||| |||||| ||| || |||||||||||    
T  26081306 aaaattaagagttttcaattttagtttcgataaaattttattgataattttactcctccacaatattaaagtttataagaatagttcctattttaaaaac 26081207  T
Q  213 tttttacaaa 222  Q
    |||| |||||    
T  26081206 ttttgacaaa 26081197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 24367880 - 24367823
Alignment:
Q  90 ttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaa 147  Q
    |||||||||||||||||| ||  ||||||||||| |||||||||||||  ||||||||    
T  24367880 ttaaatatgttcttaatccctataaaattatgagctttcaagtttagtctctataaaa 24367823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 35574406 - 35574353
Alignment:
Q  112 caaaattatgagttttcaagtttagttcctataaaattttaagggtaattttag 165  Q
    |||||||| ||| |||||| |||||||||||| ||||||||| |||||||||||    
T  35574406 caaaattacgagctttcaaatttagttcctattaaattttaacggtaattttag 35574353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 38377891 - 38377947
Alignment:
Q  188 taagaacagtccccattttaaaaactttttacaaaaaatgaatatttttattcctcc 244  Q
    |||||| |||||| ||||||||||||||||| |||||||||| | ||||| ||||||    
T  38377891 taagaatagtccctattttaaaaactttttataaaaaatgaacacttttagtcctcc 38377947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 33894521 - 33894459
Alignment:
Q  124 ttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagttt 186  Q
    |||||||||||| |   ||||||||||||| | ||||||||| ||||||||||||| ||||||    
T  33894521 ttttcaagtttaatctgtataaaattttaatgttaattttagtcttccataatattgtagttt 33894459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 225
Target Start/End: Complemental strand, 31050147 - 31050010
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| |||||| ||||||||| |   ||||| ||||||||  ||||||||||| |||  |||| |||||   || |||||||| ||| |||    
T  31050147 ggttaaatatgtttttaatccctgcaaaatcacatgtttttaagtttagcccctataaaattataattgtaaatttagttctcgataatattgtagcttg 31050048  T
Q  188 taagaacagtccccattttaaaaactttttacaaaaaa 225  Q
    |||  | ||||   ||||| ||||| ||||||||||||    
T  31050047 taaagatagtcattattttgaaaaccttttacaaaaaa 31050010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 38377840 - 38377881
Alignment:
Q  124 ttttcaagtttagttcctataaaattttaagggtaattttag 165  Q
    |||| ||||||||| ||||||||||||||| |||||||||||    
T  38377840 tttttaagtttagtccctataaaattttaatggtaattttag 38377881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 47472218 - 47472286
Alignment:
Q  124 ttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaa 193  Q
    |||| ||||||||||| ||||||||||||| ||||||||||| | | ||||||||| || ||| ||||||    
T  47472218 tttttaagtttagttc-tataaaattttaatggtaattttagtccttcataatattgtaatttataagaa 47472286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 784152 - 784112
Alignment:
Q  197 tccccattttaaaaactttttacaaaaaatgaatattttta 237  Q
    |||| ||||| |||||||||||||||||||| |||||||||    
T  784152 tccctattttgaaaactttttacaaaaaatggatattttta 784112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 10573982 - 10574050
Alignment:
Q  122 agttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaa 190  Q
    ||||||||| ||||||| |||||||| | ||| || |||||||  | ||||||||||| ||||||||||    
T  10573982 agttttcaaatttagtttctataaaaatataatggcaattttaatcctccataatattgtagtttgtaa 10574050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 90 - 237
Target Start/End: Complemental strand, 40751801 - 40751654
Alignment:
Q  90 ttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgta 189  Q
    |||||||| || ||||||| | ||||||||| |||||||||||||||||||||||||||||||| | ||||| | | | | |||||||||||||||||||    
T  40751801 ttaaatatatttttaatctgtacaaaattataagttttcaagtttagttcctataaaattttaatgctaattattgtccttcataatattttagtttgta 40751702  T
Q  190 agaacagtccccattttaaaaactttttacaaaaaatgaatattttta 237  Q
    |||| | |||| |||||||||| |  ||||||||| ||||||||||||    
T  40751701 agaataatccctattttaaaaattgattacaaaaactgaatattttta 40751654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 244
Target Start/End: Original strand, 11297754 - 11297911
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||| || || |||||| ||||||||| ||| ||||||||||| ||||||||| ||||||||||| | |||| ||||||||||||||    
T  11297754 ggttaaatatgtttttattccctacaaaataatgagtttttaagcttagttcctatgaaattttaatggtaattttagtcctccaaaatattttagtttg 11297853  T
Q  188 taagaacagtccccattttaaaaactttttac-aaaaaatgaatatttttattcctcc 244  Q
    ||| || |||||| ||||| |||||||| ||| |||||||| ||| ||||| ||||||    
T  11297854 taaaaatagtccctattttgaaaactttatactaaaaaatggatacttttagtcctcc 11297911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 237
Target Start/End: Original strand, 25067648 - 25067797
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||||||||| |||||| || | |||| |||||| ||| |||||||||||||| ||||||||||  | ||||||||||| |||||||    
T  25067648 ggttaaatatgtttttaatctctacaaaatcataaatttttaagtttggtttctataaaattttaatggtaattttaatcctccataatattatagtttg 25067747  T
Q  188 taagaacagtccccattttaaaaactttttacaaaaaatgaatattttta 237  Q
    ||| || |||||  ||||| |||||| ||||||||||||| ||| |||||    
T  25067748 taaaaatagtccttattttgaaaactgtttacaaaaaatggatactttta 25067797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 30851783 - 30851671
Alignment:
Q  113 aaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaac 212  Q
    ||||||| |||||||||| ||||| |||||||||||||||| |||||||||||  ||||||||||||  |||||||||||| |||||| ||||||||||     
T  30851783 aaaattaagagttttcaactttagatcctataaaattttaatggtaattttagttttccataatattgaagtttgtaagaatagtccctattttaaaaaa 30851684  T
Q  213 tttttacaaaaaa 225  Q
    |||| ||||||||    
T  30851683 ttttgacaaaaaa 30851671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 88 - 225
Target Start/End: Complemental strand, 27567838 - 27567701
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    |||||||||| || ||| || || |||||| ||||||||| ||||||| | ||||||||||||||| ||||||||||| | | ||||||||| |||||||    
T  27567838 ggttaaatatatttttagtccctacaaaatcatgagttttaaagtttattccctataaaattttaatggtaattttagtcctacataatattgtagtttg 27567739  T
Q  188 taagaacagtccccattttaaaaactttttacaaaaaa 225  Q
    |||||| |||||  ||||| |||||||||| |||||||    
T  27567738 taagaatagtccttattttgaaaactttttgcaaaaaa 27567701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 244
Target Start/End: Original strand, 20132051 - 20132206
Alignment:
Q  89 gttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgt 188  Q
    |||||||||||| ||| || ||  | ||||||||||||| |||||||||| | ||||||||||||  |||||||||| | |  | |||||| || |||||    
T  20132051 gttaaatatgtttttagtccctatataattatgagtttttaagtttagtttcaataaaattttaattgtaattttagtcctaaaaaatattataatttgt 20132150  T
Q  189 aagaacagtccccattttaaaaactttttacaaaaaatgaatatttttattcctcc 244  Q
    ||||| |||| |  |||| |||||||||||||||||||| |||  |||| ||||||    
T  20132151 aagaatagtctctgttttgaaaactttttacaaaaaatggatacctttagtcctcc 20132206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 13009480 - 13009380
Alignment:
Q  145 aaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaaaa-tgaatatttttattcctc 243  Q
    ||||||||| ||||||||||| | || |||||||| ||||||||||||| ||||   ||||||| |||||||||||||||| |||||| ||||| |||||    
T  13009480 aaattttaatggtaattttagtcctctataatattgtagtttgtaagaatagtcgttattttaataactttttacaaaaaagtgaatacttttagtcctc 13009381  T
Q  244 c 244  Q
    |    
T  13009380 c 13009380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 12925250 - 12925365
Alignment:
Q  129 aagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaaaatga 228  Q
    ||||||||||||||||||||||||| | |||||||||   |||| || ||| || ||| ||| || | |||  ||||| |||||||||||||||||||      
T  12925250 aagtttagttcctataaaattttaatgataattttagttctccaaaaaattataatttttaataataatccttatttttaaaactttttacaaaaaatag 12925349  T
Q  229 atatttttattcctcc 244  Q
    ||||||||| ||||||    
T  12925350 atatttttagtcctcc 12925365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 244
Target Start/End: Original strand, 28098552 - 28098683
Alignment:
Q  112 caaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaa 211  Q
    |||||| ||||||||| |||||| ||   ||||||||||||| ||||||||||| | || |||||| |  ||||||||  || | |||  ||||| ||||    
T  28098552 caaaatcatgagtttttaagtttggtctttataaaattttaatggtaattttagtcctcgataatagt--agtttgtagaaataatccatattttgaaaa 28098649  T
Q  212 ctttt-tacaaaaaatgaatatttttattcctcc 244  Q
    ||||| ||||||||||||||||||||| ||||||    
T  28098650 cttttttacaaaaaatgaatatttttagtcctcc 28098683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 28555276 - 28555354
Alignment:
Q  87 aggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttag 165  Q
    |||||||||||||| ||| ||||| ||||||  ||| |||| ||||||||| | ||||||||||||| |||||||||||    
T  28555276 aggttaaatatgtttttagtctctacaaaatcgtgattttttaagtttagtccatataaaattttaatggtaattttag 28555354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 34471260 - 34471321
Alignment:
Q  129 aagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaa 190  Q
    ||||||||| ||||||||||||||| ||||||||||| | |||| |||||| ||||||||||    
T  34471260 aagtttagtccctataaaattttaatggtaattttagtcctccaaaatattgtagtttgtaa 34471321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 33991809 - 33991887
Alignment:
Q  74 ataaaagagaaaaaggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaatttta 152  Q
    |||||| || ||| ||||||||||||| |||||| ||  ||||| ||||||||||||||||| ||| |||||| |||||    
T  33991809 ataaaaaagtaaacggttaaatatgtttttaatccctataaaatcatgagttttcaagtttaattcttataaagtttta 33991887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 198
Target Start/End: Complemental strand, 20463063 - 20462955
Alignment:
Q  90 ttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgta 189  Q
    ||||||||||| ||| | | | |||||||||||| ||| |||||||||  |||| |||||| ||| |||| |||| || |||||||||||  ||||| ||    
T  20463063 ttaaatatgtttttagtttttacaaaattatgagcttttaagtttagtcactattaaatttgaagtgtaagtttaaccctccataatattgcagtttata 20462964  T
Q  190 agaacagtc 198  Q
    |||| ||||    
T  20462963 agaatagtc 20462955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 39596922 - 39596763
Alignment:
Q  86 aaggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcc----tataaaattttaagggtaattttagccttccataatatttt 181  Q
    ||||||||||||||| ||||||  |  ||||||| ||||||| |||||||||| |    |||||| |||||| | ||||||||| | |||| |||||| |    
T  39596922 aaggttaaatatgtttttaatccttataaaattacgagtttttaagtttagtttctatatataaatttttaatgataattttagtcctccaaaatattgt 39596823  T
Q  182 agtttgtaa---gaacagtccccattttaaaaac-tttttacaaaaaatgaatattttta 237  Q
    |||||||||    |  | |||| ||||| ||||| ||||||||||||||||||| |||||    
T  39596822 agtttgtaatattattattccctattttgaaaacttttttacaaaaaatgaatactttta 39596763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 243
Target Start/End: Original strand, 7379088 - 7379217
Alignment:
Q  113 aaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaac 212  Q
    |||||||| |||||| ||||||| | | ||||||||||||| | | ||||||| | | ||||||||| ||| || | ||||||  | | ||||| |||||    
T  7379088 aaaattataagtttttaagtttaatccttataaaattttaatgattattttagtcattcataatattgtagcttttgagaacaacctcgattttgaaaac 7379187  T
Q  213 tttttacaaaaaatgaatatttttattcctc 243  Q
    |||||| | |||||| ||||||||| |||||    
T  7379188 ttttta-agaaaatgtatatttttaatcctc 7379217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 21367191 - 21367257
Alignment:
Q  113 aaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatatt 179  Q
    ||||||||||||||| || ||||||   ||||||||||||| ||||||||||  | |||||||||||    
T  21367191 aaaattatgagtttttaaatttagtctttataaaattttaatggtaattttaatcctccataatatt 21367257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 88 - 244
Target Start/End: Original strand, 12596850 - 12597006
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||| ||||| |||||| || |||||| ||||||||| ||||||||||||||| ||||||||||| | |||| |||||| |||||||    
T  12596850 ggttaaatatgtttttagtctctacaaaatcataagtttttaagtttagtccctataaaattttaatggtaattttagtcctccaaaatattgtagtttg 12596949  T
Q  188 taagaacagtccccattttaaaaactttttacaaaaaatgaatatttttattcctcc 244  Q
    ||| |  |||| | ||||| ||||| |||||||||||||| |||| |||| ||||||    
T  12596950 taaaattagtctctattttgaaaacattttacaaaaaatggatatatttagtcctcc 12597006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 26938751 - 26938637
Alignment:
Q  113 aaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaac 212  Q
    ||||| || |||||||||||||||| ||||||||||||||| ||||||||| | | |||||||| |  ||||||||||||| |||||| ||||| |||||    
T  26938751 aaaatcataagttttcaagtttagtccctataaaattttaatggtaatttttgtcctccataatttagtagtttgtaagaatagtccctattttgaaaac 26938652  T
Q  213 tttttacaaaaaatg 227  Q
    |||||  ||||||||    
T  26938651 ttttttgaaaaaatg 26938637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 88 - 244
Target Start/End: Complemental strand, 17219878 - 17219719
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagt--ttagttcctataaaattttaagggtaattttag-ccttccataatattttagt 184  Q
    ||||||||||||| ||| ||||| |||||| ||||| ||| |||   ||||| ||||| ||||||||| ||||||||||| ||||| | |||||||||||    
T  17219878 ggttaaatatgtttttagtctctacaaaatcatgagattttaagcgcttagtccctatgaaattttaatggtaattttagtccttcta-aatattttagt 17219780  T
Q  185 ttgtaagaacagtccccattttaaaaactttttac-aaaaaatgaatatttttattcctcc 244  Q
    |||||| || |||||| ||||| |||||||| ||| |||||||| ||||||||| ||||||    
T  17219779 ttgtaaaaatagtccctattttgaaaactttatacaaaaaaatggatatttttagtcctcc 17219719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 244
Target Start/End: Complemental strand, 24916209 - 24916055
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||| ||  |  ||||| ||||||||| ||||||||| ||||||||||||||| ||||||||| | | |||| |||| | |||||||    
T  24916209 ggttaaatatgtttttagtccatataaaatcatgagtttttaagtttagtccctataaaattttaatggtaattttcgtcctccaaaata-tgtagtttg 24916111  T
Q  188 taagaacagtccccattttaaaaactttttacaaaaaatgaatatttttattcctcc 244  Q
    ||| || ||| || |||||  |||||||||| |||||||| ||||||||| ||||||    
T  24916110 taaaaatagt-cctattttggaaactttttagaaaaaatggatatttttagtcctcc 24916055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 26939035 - 26938908
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttag-ttt 186  Q
    ||||||||||| | ||| || ||  ||||| || |||||||||||||||| ||||||||||||||| ||||||||||| | |||||||   ||||| |||    
T  26939035 ggttaaatatgcttttagtccctataaaatcataagttttcaagtttagtccctataaaattttaatggtaattttagtcctccataa---tttagtttt 26938939  T
Q  187 gtaagaacagtccccattttaaaaacttttt 217  Q
    ||||||| |||||| ||||| ||||||||||    
T  26938938 gtaagaatagtccctattttgaaaacttttt 26938908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 33038252 - 33038360
Alignment:
Q  129 aagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaaaatga 228  Q
    ||||||||||||||| ||||||||| |  |||||||  | |||||||||||  |||||||||||| ||| || ||||||||||||||||||| ||||||     
T  33038252 aagtttagttcctattaaattttaatgaaaattttaatcctccataatattgcagtttgtaagaatagttcctattttaaaaactttttacagaaaatgg 33038351  T
Q  229 atattttta 237  Q
    ||| |||||    
T  33038352 atactttta 33038360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 88 - 206
Target Start/End: Original strand, 17153534 - 17153652
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||| || || |||||| ||||||||| ||| ||||| ||||| ||||||||| ||||||||||| | |||| ||||||| ||||||    
T  17153534 ggttaaatatgtttttagtccctacaaaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcctccaaaatatttaagtttg 17153633  T
Q  188 taagaacagtccccatttt 206  Q
    | | || |||||| |||||    
T  17153634 ttaaaatagtccctatttt 17153652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 243
Target Start/End: Complemental strand, 24292315 - 24292197
Alignment:
Q  125 tttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaaa 224  Q
    ||||||||||||| ||||| |||||||||  |||||||||| | | ||||| |||   |||||||||||||||||| |||||||||  |||||| |||||    
T  24292315 tttcaagtttagtccctattaaattttaattgtaattttagtccttcataaaattgatgtttgtaagaacagtccctattttaaaagatttttataaaaa 24292216  T
Q  225 atgaatatttttattcctc 243  Q
    ||| ||| ||||| |||||    
T  24292215 atggatacttttagtcctc 24292197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 225
Target Start/End: Complemental strand, 10467620 - 10467519
Alignment:
Q  124 ttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaa 223  Q
    |||| ||||||| | | ||||||||||||| ||||||||||  | ||||||||||| ||  ||||||||| |||||| ||||| ||||||||||||||||    
T  10467620 tttttaagtttattccttataaaattttaatggtaattttaatcctccataatattgtaacttgtaagaatagtccctattttgaaaactttttacaaaa 10467521  T
Q  224 aa 225  Q
    ||    
T  10467520 aa 10467519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 113 - 244
Target Start/End: Original strand, 33695143 - 33695273
Alignment:
Q  113 aaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaac 212  Q
    |||||||||||||||||||||||||   ||||||| ||||| | ||||||||| | || | |||||| ||  ||||||||| ||||   ||||| ||||     
T  33695143 aaaattatgagttttcaagtttagtctttataaaactttaatgataattttagtcctctacaatattata-cttgtaagaatagtctttattttgaaaag 33695241  T
Q  213 tttttacaaaaaatgaatatttttattcctcc 244  Q
     ||||||||||| |||||||||||||||||||    
T  33695242 attttacaaaaactgaatatttttattcctcc 33695273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 88 - 213
Target Start/End: Complemental strand, 17157149 - 17157024
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||| || || |||||| |||| |||| ||  ||||| ||||| ||||||||| ||||||||||| | |||| ||||||||||||||    
T  17157149 ggttaaatatgtttttagtccctacaaaatcatgattttttaaacttagtccctatgaaattttaatggtaattttagtcctccaaaatattttagtttg 17157050  T
Q  188 taagaacagtccccattttaaaaact 213  Q
    | | || || ||| ||||| ||||||    
T  17157049 ttaaaatagcccctattttgaaaact 17157024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 32796979 - 32797067
Alignment:
Q  138 tcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaaaat 226  Q
    ||||||||| ||||||  |||||||||| | || | | |||| ||||||||||||| |||||  |||||||||||||||||||||||||    
T  32796979 tcctataaatttttaatagtaattttagtcctctaaagtattgtagtttgtaagaatagtccatattttaaaaactttttacaaaaaat 32797067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 16483745 - 16483851
Alignment:
Q  93 aatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaaga 192  Q
    |||||||| | |||| || || ||| ||||||||| ||||||||| ||| ||||||||||| ||||||||||| ||| || |||||| |||||||||| |    
T  16483745 aatatgttttcaatccctacagaatcatgagtttttaagtttagtccctgtaaaattttaatggtaattttagtctt-caaaatattgtagtttgtaaaa 16483843  T
Q  193 acagtccc 200  Q
    | ||||||    
T  16483844 atagtccc 16483851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 39344630 - 39344715
Alignment:
Q  139 cctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaaa 224  Q
    ||||||||||||||| ||||| ||||| | ||||||||||| ||||||||||||| ||| |  ||||| ||||| ||||| |||||    
T  39344630 cctataaaattttaatggtaactttagtcctccataatattgtagtttgtaagaatagttcatattttgaaaaccttttaaaaaaa 39344715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 30743918 - 30743990
Alignment:
Q  118 tatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaa 190  Q
    ||||||||||||| |||||| ||||||||| ||||| | ||||||||| | || |||||||| ||||||||||    
T  30743918 tatgagttttcaaatttagtacctataaaactttaatgttaattttagtcctcaataatattgtagtttgtaa 30743990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 15966447 - 15966558
Alignment:
Q  113 aaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaac 212  Q
    ||||| ||||||||||||||||| || |||| ||||||||| |||| |||||| ||| |||| ||||  | |||||||||| ||||   |||| |||||     
T  15966447 aaaatcatgagttttcaagtttatttgctattaaattttaatggtacttttagtctttcatactattgcattttgtaagaatagtctatatttaaaaaag 15966546  T
Q  213 tttttacaaaaa 224  Q
    |||||| |||||    
T  15966547 tttttaaaaaaa 15966558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 244
Target Start/End: Complemental strand, 42024133 - 42024002
Alignment:
Q  112 caaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaa 211  Q
    |||||| | |||||||  |||||||| || |||||||||||| | ||||||||| | |||| |||||| ||| |||||| || |||||| |||| |||      
T  42024133 caaaatcacgagtttttgagtttagtccccataaaattttaatgctaattttagtcctccaaaatattgtag-ttgtaataatagtccctatttaaaatt 42024035  T
Q  212 ctttttacaaaaaatgaatatttttattcctcc 244  Q
    |||||||||||| ||| | | ||||| ||||||    
T  42024034 ctttttacaaaatatgtacacttttagtcctcc 42024002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 8026065 - 8026136
Alignment:
Q  140 ctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaa 211  Q
    |||||||||||||| ||| ||| ||| | |||||||| |  ||||||||||||| |||||| ||||||||||    
T  8026065 ctataaaattttaatggtgattgtagtcctccataatttagtagtttgtaagaatagtccctattttaaaaa 8026136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 43651397 - 43651461
Alignment:
Q  129 aagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaa 193  Q
    |||||||||| ||| |||||||||| | ||||||||| |  ||| |||||| |||||||||||||    
T  43651397 aagtttagtttctagaaaattttaatgataattttagtccaccacaatattgtagtttgtaagaa 43651461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 112 - 244
Target Start/End: Original strand, 855585 - 855717
Alignment:
Q  112 caaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaa 211  Q
    |||||| ||||||||| ||||||||| ||||||||||||||| ||||||||||| | ||  | ||||| ||||||||| ||| |||||  ||||| ||||    
T  855585 caaaatcatgagtttttaagtttagtccctataaaattttaatggtaattttagtcctcggtgatattgtagtttgtaggaatagtccatattttgaaaa 855684  T
Q  212 ctttttacaaaaaatgaatatttttattcctcc 244  Q
    |||||||||||||||||||||||||| ||||||    
T  855685 ctttttacaaaaaatgaatatttttagtcctcc 855717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 113 - 237
Target Start/End: Original strand, 6191111 - 6191235
Alignment:
Q  113 aaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaac 212  Q
    ||||| || ||| |||||||||||| ||||||||||||||| ||||||||||| | ||||||||||| || |||||||||| |||||  ||||| |||||    
T  6191111 aaaatcattagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatattgtactttgtaagaatagtccgtattttgaaaac 6191210  T
Q  213 tttttacaaaaaatgaatattttta 237  Q
    |||||||||||||||||||| ||||    
T  6191211 tttttacaaaaaatgaatatgttta 6191235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 244
Target Start/End: Original strand, 10077604 - 10077758
Alignment:
Q  91 taaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaa 190  Q
    |||| ||||| ||| ||| |||||||| ||||||||||||||||||| |||||||| |||||| ||||||||||  | | ||||||||| ||||||||||    
T  10077604 taaacatgtttttagtctttgcaaaatcatgagttttcaagtttagtccctataaa-ttttaatggtaattttaatccttcataatattgtagtttgtaa 10077702  T
Q  191 gaacagtccccattttaaaaactttttac--aaaaaatgaatatttttattcctcc 244  Q
     || |||||| ||||| ||||||||||||  |||||||| ||||||||| ||||||    
T  10077703 taatagtccctattttgaaaactttttacaaaaaaaatggatatttttagtcctcc 10077758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 8794609 - 8794718
Alignment:
Q  124 ttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaa 223  Q
    |||||||||||||| ||||||||||||||| |||||||||||   ||||||||||| || || ||||||| |||||| ||||||||||||||||||||||    
T  8794609 ttttcaagtttagt-cctataaaattttaatggtaattttag---tccataatattgtaattcgtaagaatagtccctattttaaaaactttttacaaaa 8794704  T
Q  224 aatgaatattttta 237  Q
    |||| | |||||||    
T  8794705 aatggacattttta 8794718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 226
Target Start/End: Complemental strand, 29242732 - 29242597
Alignment:
Q  89 gttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgt 188  Q
    |||||||| ||| ||| || || |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||| | || |  ||||| ||||||||    
T  29242732 gttaaatacgtttttagtccctacaaaattaggagttttcaagtttagtccctataaaattttaatggtaattttagtcctcgaagatattatagtttgt 29242633  T
Q  189 aagaacagtccccattttaaaaactttttacaaaaaat 226  Q
    ||||| |||||| |||||   | |||||||||||||||    
T  29242632 aagaatagtccctatttt--gacctttttacaaaaaat 29242597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 226
Target Start/End: Complemental strand, 27694686 - 27694548
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| |||||   |||||||| ||||||||| ||||||| ||||| | ||||||||| ||||||||||  | |||| |||||| | ||| |    
T  27694686 ggttaaatatgtttttaattcttgcaaaatcatgagtttttaagtttaattcctgtcaaattttaaaggtaattttaatcctccaaaatattgtggttcg 27694587  T
Q  188 taagaacagtccccattttaaaaactttttacaaaaaat 226  Q
    ||| |   ||||| |||||||||||||||||||||||||    
T  27694586 taaaagtggtccctattttaaaaactttttacaaaaaat 27694548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 88 - 206
Target Start/End: Complemental strand, 24490724 - 24490606
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||| || || |||||||||| ||||| |||||||||  ||||||||||||||  |||||||||| | || | |||||| |||||||    
T  24490724 ggttaaatatgtttttagtccctacaaaattatgtgtttttaagtttagtctctataaaattttaatagtaattttagtcctctacaatattgtagtttg 24490625  T
Q  188 taagaacagtccccatttt 206  Q
    |||||| | |||| |||||    
T  24490624 taagaataatccctatttt 24490606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 88 - 242
Target Start/End: Original strand, 34904007 - 34904161
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||| || || |||||| |  |||||| ||||||||| ||| ||||||| |||   |||||||||   | ||||||||| |||||||    
T  34904007 ggttaaatatgtttttagtccctacaaaatcacaagtttttaagtttagtccctgtaaaattgtaataataattttagttcttcataatattgtagtttg 34904106  T
Q  188 taagaacagtccccattttaaaaactttttacaaaaaatgaatatttttattcct 242  Q
    |||||| | |||| ||||| ||||||||||||||| |||| ||| ||||| ||||    
T  34904107 taagaataatccctattttgaaaactttttacaaagaatggatacttttagtcct 34904161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 35954254 - 35954350
Alignment:
Q  122 agttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaacttttta 218  Q
    |||||| ||||||||| ||||| ||||||||| ||||||||||| | || |||||||| ||||||||||||| |||| | ||| ||||| |||||||    
T  35954254 agttttaaagtttagtccctattaaattttaatggtaattttagtcctcaataatattgtagtttgtaagaatagtctctattataaaatcttttta 35954350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 244
Target Start/End: Complemental strand, 39293282 - 39293127
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||||||  | |||||| | || |||  | ||||| | ||||||||||||||| ||||||||||| | || | |||||| || ||||    
T  39293282 ggttaaatatgtttttaatccatacaaaatcacgaatttctaggtttaatccctataaaattttaatggtaattttagtcctctaaaatattgtaatttg 39293183  T
Q  188 taagaacagtccccattttaaaaactttttacaaaaaatgaatatttttattcctcc 244  Q
    ||| || ||| || ||||||||||| ||||  |||||||| ||||||||||||||||    
T  39293182 taataatagttcctattttaaaaacatttt-taaaaaatggatatttttattcctcc 39293127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 30641196 - 30641060
Alignment:
Q  89 gttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgt 188  Q
    |||||||||||| ||| || || ||| || ||||||||| ||| ||||| | ||| ||||||||| ||||  ||||| | |||  |||||||||||||||    
T  30641196 gttaaatatgtttttagtccctacaatatcatgagtttttaagcttagtccatatgaaattttaatggtatatttagtcctccgaaatattttagtttgt 30641097  T
Q  189 aagaacagtccccattttaaaaactttttacaaaaaa 225  Q
    || |  |||||| ||||| |||||||| |||||||||    
T  30641096 aaaagtagtccctattttgaaaactttatacaaaaaa 30641060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 31994859 - 31994756
Alignment:
Q  124 ttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaa 223  Q
    |||| ||||||| | ||| |||||||||||  ||||||||||   ||||||||||| || |||||||||| |||||| ||||| ||||||||||  ||||    
T  31994859 tttttaagtttaatccctttaaaattttaatagtaattttagttctccataatattgtaatttgtaagaatagtcccaattttgaaaactttttttaaaa 31994760  T
Q  224 aatg 227  Q
    ||||    
T  31994759 aatg 31994756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 17448959 - 17448895
Alignment:
Q  89 gttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaa 153  Q
    |||||||||||| |||||| ||  ||||||||||||||| ||||||||||  |||||||||||||    
T  17448959 gttaaatatgtttttaatccctataaaattatgagtttttaagtttagtttttataaaattttaa 17448895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 37284330 - 37284289
Alignment:
Q  112 caaaattatgagttttcaagtttagttcctataaaattttaa 153  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  37284330 caaaattatgagtttttaagtttagtccctataaaattttaa 37284289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 30632675 - 30632591
Alignment:
Q  122 agttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccatttt 206  Q
    |||||| || ||||||  |||||||||||||| ||||||||||| |||  |||||||| |||||||||  || |||||| |||||    
T  30632675 agtttttaattttagtctctataaaattttaatggtaattttagtcttggataatattgtagtttgtacaaatagtccctatttt 30632591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 30669144 - 30669060
Alignment:
Q  122 agttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccatttt 206  Q
    |||||| || ||||||  |||||||||||||| ||||||||||| |||  |||||||| |||||||||  || |||||| |||||    
T  30669144 agtttttaattttagtctctataaaattttaatggtaattttagtcttgaataatattatagtttgtacaaatagtccctatttt 30669060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 11711282 - 11711228
Alignment:
Q  125 tttcaagtttagttcctataaaattttaagggtaattttagccttccataatatt 179  Q
    ||||||||||||| |||||||||||||||| |||| ||||  | |||||||||||    
T  11711282 tttcaagtttagtccctataaaattttaagtgtaagtttaatcctccataatatt 11711228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 30666734 - 30666668
Alignment:
Q  140 ctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccatttt 206  Q
    |||||||||||||| ||||||||||| |||  |||||||| |||||||||  || |||||| |||||    
T  30666734 ctataaaattttaatggtaattttagtcttgaataatattgtagtttgtacaaatagtccctatttt 30666668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 434657 - 434544
Alignment:
Q  124 ttttcaagtttagttcctataaaattttaagggtaattttag-ccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaa 222  Q
    |||| |||||||||   ||||||||||||| ||| ||||||| ||||    ||||||| |||||||||||| |||||   |||| ||||||||||  |||    
T  434657 tttttaagtttagtcaatataaaattttaatggtgattttagtcctttgtaaatatttaagtttgtaagaatagtccatcttttcaaaactttttctaaa 434558  T
Q  223 aaatgaatattttt 236  Q
    ||||| ||||||||    
T  434557 aaatggatattttt 434544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 237
Target Start/End: Complemental strand, 152317 - 152193
Alignment:
Q  113 aaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaac 212  Q
    |||||||||| ||||||||||||||   ||||||||||||| ||||||||||| | | ||||||||| ||| ||||||||| |||||| ||||| |||||    
T  152317 aaaattatgaattttcaagtttagtctttataaaattttaatggtaattttagtccttcataatattgtagattgtaagaatagtccctatttttaaaac 152218  T
Q  213 tttttacaaaaaatgaatattttta 237  Q
    || || |||||||||||||||||||    
T  152217 ttcttgcaaaaaatgaatattttta 152193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 244
Target Start/End: Complemental strand, 10516741 - 10516586
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||| || || |||||| || |||||| || |||||| ||||||||||| ||| | ||||||||||| ||||||||||| |||||||    
T  10516741 ggttaaatatgtttttagtccctacaaaatcataagtttttaaatttagtccctataaaattgtaatgataattttagccctccataatattgtagtttg 10516642  T
Q  188 taagaacagtccccattttaaaaactttttacaaaaaatgaatatttttattcctcc 244  Q
    |||||| |||||| | ||||| |||||||||||||| ||| ||| ||||| ||||||    
T  10516641 taagaatagtcccta-tttaataactttttacaaaatatggatacttttagtcctcc 10516586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 30465304 - 30465192
Alignment:
Q  113 aaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaac 212  Q
    ||||||| |||||||||| ||||| |||||||||||||||| |||||||||||  ||||||||||||  |||||||||||| |||||| ||||||||||     
T  30465304 aaaattaagagttttcaactttagatcctataaaattttaatggtaattttagttttccataatattgaagtttgtaagaatagtccctattttaaaaaa 30465205  T
Q  213 tttttacaaaaaa 225  Q
    |||| ||||||||    
T  30465204 ttttgacaaaaaa 30465192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 214
Target Start/End: Original strand, 24672266 - 24672392
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||||||||| |||| | | || |||||||||||||| ||||||||||||||| ||||||||||| | ||||||||||| || ||||    
T  24672266 ggttaaatatgtttttaatctctacaaattcacgatttttcaagtttagtccctataaaattttaatggtaattttagtcctccataatattgtaatttg 24672365  T
Q  188 taagaacagtccccattttaaaaactt 214  Q
    ||| || |||| | |||||||||||||    
T  24672366 taataatagtctctattttaaaaactt 24672392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 244
Target Start/End: Original strand, 17957027 - 17957182
Alignment:
Q  89 gttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgt 188  Q
    |||||||||||| ||| || ||  | ||||||||||||| |||||||||||| ||||||||||||  |||||||||| | |  | |||||| ||||||||    
T  17957027 gttaaatatgtttttagtccctatataattatgagtttttaagtttagttccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgt 17957126  T
Q  189 aagaacagtccccattttaaaaactttttacaaaaaatgaatatttttattcctcc 244  Q
    ||||| |||| |  |||| |||||||||||||||||||| |||  |||| ||||||    
T  17957127 aagaatagtctctgttttgaaaactttttacaaaaaatggatacctttagtcctcc 17957182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 6197842 - 6197962
Alignment:
Q  124 ttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaa 223  Q
    |||||||||||||| | ||||||||||||| ||||| ||||| | |||||||| |  ||||||||||||| |||| | ||||| ||||||||||| ||||    
T  6197842 ttttcaagtttagtccatataaaattttaatggtaaatttagtcctccataatttagtagtttgtaagaatagtctctattttgaaaactttttagaaaa 6197941  T
Q  224 aatgaatatttttattcctcc 244  Q
    |||| | | ||||||||||||    
T  6197942 aatggacacttttattcctcc 6197962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 226
Target Start/End: Original strand, 3807066 - 3807203
Alignment:
Q  89 gttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgt 188  Q
    |||||||||||| ||| || ||  ||||| || |||||| | |||||||  |||||||||||||| ||||||||| | | |||||||| |  ||||||||    
T  3807066 gttaaatatgtttttagtccctataaaatcataagtttttatgtttagtctctataaaattttaatggtaattttcgtcctccataatttagtagtttgt 3807165  T
Q  189 aagaacagtccccattttaaaaactttttacaaaaaat 226  Q
    ||||| |||||| ||||| ||||||||| |||||||||    
T  3807166 aagaatagtccctattttgaaaacttttaacaaaaaat 3807203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 12611793 - 12611937
Alignment:
Q  90 ttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgta 189  Q
    ||||||||||| ||| || || |||||| |||| |||| || |||| | ||| ||||||||||| ||||||||||| | ||||||| ||| |||||| ||    
T  12611793 ttaaatatgtttttagtccctacaaaatcatgaatttttaaatttaatccctctaaaattttaatggtaattttagtcctccataacattatagtttata 12611892  T
Q  190 agaacagtccccattttaaaaactttttacaaaaaatgaatattttt 236  Q
    |||| ||| ||  |||| ||| ||||||||||||||| |||||||||    
T  12611893 agaatagttcc--tttttaaatctttttacaaaaaattaatattttt 12611937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 25043005 - 25042896
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||| || || |||||| |||||||||||| |||||| ||||||||||||||| ||||||||||| | ||  | ||||| |||||||    
T  25043005 ggttaaatatgtttttagtccctacaaaatcatgagttttcaaatttagt-cctataaaattttaatggtaattttagtcctctgtgatattgtagtttg 25042907  T
Q  188 taagaacagtc 198  Q
    |||||| ||||    
T  25042906 taagaatagtc 25042896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 10311667 - 10311777
Alignment:
Q  121 gagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttaca 220  Q
    |||||||||| |||||||||||||||||||||| ||||||||||| | || | |||||| || ||||||||||  ||||  ||||| ||   ||||||||    
T  10311667 gagttttcaaatttagttcctataaaattttaatggtaattttagtcatcaacaatattgtaatttgtaagaatggtccttattttgaattttttttaca 10311766  T
Q  221 aaaaatgaata 231  Q
    |||| ||||||    
T  10311767 aaaactgaata 10311777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 17158594 - 17158490
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||| ||||||| ||| || ||  ||||||||||||||||| ||| ||| |||| || |||||||  |||||||||| ||| || |||||| |||||||    
T  17158594 ggttagatatgtttttagtccctataaaattatgagttttcacgttgagtccctacaacattttaatagtaattttagtctttcaaaatattatagtttg 17158495  T
Q  188 taaga 192  Q
    |||||    
T  17158494 taaga 17158490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 4405943 - 4405837
Alignment:
Q  91 taaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaa 190  Q
    |||||||||| ||| || || |||||| || |||||| ||||||||| |||||||||| |||| |||||||||   | ||||||||||| || |||||||    
T  4405943 taaatatgtttttagtc-ctacaaaatcataagtttttaagtttagtccctataaaatattaatggtaatttttatcctccataatattctactttgtaa 4405845  T
Q  191 gaacagtc 198  Q
    ||| ||||    
T  4405844 gaatagtc 4405837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 232
Target Start/End: Complemental strand, 3336152 - 3336014
Alignment:
Q  94 atatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaa 193  Q
    ||||||| ||||||  | |||||| || | |||| ||||||||  ||||||||||||||  ||||||||||| | || | |||||| || |||||| |||    
T  3336152 atatgtttttaatccttacaaaatcataaatttttaagtttagaccctataaaattttagtggtaattttagtcctctaaaatattgtaatttgtatgaa 3336053  T
Q  194 cagtccccattttaaaaactttttacaaaaaatgaatat 232  Q
     |||    ||| | |||||||||||||| ||||||||||    
T  3336052 tagttgttattctgaaaactttttacaataaatgaatat 3336014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 14896838 - 14896874
Alignment:
Q  129 aagtttagttcctataaaattttaagggtaattttag 165  Q
    ||||||||||||||||||||||||| | |||||||||    
T  14896838 aagtttagttcctataaaattttaatgataattttag 14896874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 20985924 - 20986061
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||| ||||||| |||||  || |||||| | ||||||| || |||||| ||||||||||||||| ||||||||||| |||| | |||||| |||||||    
T  20985924 ggttagatatgtttttaattcctacaaaatcacgagtttttaaatttagtccctataaaattttaatggtaattttagtcttctaaaatattgtagtttg 20986023  T
Q  188 taagaacagtccccattttaaaaactttttacaaaaaa 225  Q
     ||||| |||||| ||||| ||||||||||||||||||    
T  20986024 caagaatagtccctattttgaaaactttttacaaaaaa 20986061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 78 - 244
Target Start/End: Complemental strand, 16545591 - 16545426
Alignment:
Q  78 aagagaaaaaggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataata 177  Q
    |||| ||||| |||||||||||| |||||| || ||||||| |||||||| ||||||| | ||||||||||||||| | ||| ||||  | |||| ||||    
T  16545591 aagataaaaaagttaaatatgtttttaatccctacaaaattttgagtttttaagtttaatccctataaaattttaatgataaatttactcctccaaaata 16545492  T
Q  178 ttttagtttgtaagaacagtccccattttaaaaactttttacaaaaaatgaatatttttattcctcc 244  Q
    || |||||| ||| ||  ||||| ||||| |||||||| ||||||||||| ||||||||| ||||||    
T  16545491 ttgtagttt-taaaaatggtccctattttgaaaactttatacaaaaaatggatatttttagtcctcc 16545426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 13392830 - 13392944
Alignment:
Q  112 caaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaa 211  Q
    |||||| || |||||| ||||||||| |||||||| |||||| | ||||||||| | |||| |||||| |||||||||| || |||||| ||||||||||    
T  13392830 caaaatcattagttttaaagtttagtccctataaagttttaatgttaattttagtcatccaaaatattgtagtttgtaaaaatagtccctattttaaaaa 13392929  T
Q  212 c-tttttacaaaaaa 225  Q
    | |||||||||||||    
T  13392930 cttttttacaaaaaa 13392944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 33753131 - 33752991
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||| || || |||||| |  |||||| ||||||||| | ||||||||||||| ||| ||||||||| ||||||||||| |||||||    
T  33753131 ggttaaatatgtttttagtc-ctacaaaatcacaagttttaaagtttagtccgtataaaattttaatggtgattttagccctccataatattgtagtttg 33753033  T
Q  188 taagaacagtccccattttaaaaactttttacaaaaaatgaa 229  Q
    ||||||  ||| | ||||| |||  || ||||||||||||||    
T  33753032 taagaatggtcactattttgaaactttattacaaaaaatgaa 33752991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 37471071 - 37471004
Alignment:
Q  121 gagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgt 188  Q
    ||||||||||||||||| ||||||||| ||||| |||  |||||| | ||||||||||| ||||||||    
T  37471071 gagttttcaagtttagtccctataaaaatttaatggtgcttttagtcctccataatattatagtttgt 37471004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 199
Target Start/End: Original strand, 1444962 - 1445070
Alignment:
Q  90 ttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgta 189  Q
    ||||||||||| ||| ||  || ||||| | |||||||||||||||||  |||||||||||| |  |||||||||  | ||||||||||| |||||| ||    
T  1444962 ttaaatatgtttttagtccttgaaaaatcacgagttttcaagtttagtctctataaaattttta-agtaattttaatcctccataatattgtagttttta 1445060  T
Q  190 agaacagtcc 199  Q
    |||| |||||    
T  1445061 agaatagtcc 1445070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 29102864 - 29102956
Alignment:
Q  119 atgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaa 211  Q
    ||||||||||||||||||| |||||| ||||| || | ||||||||| | |||| |||||| ||| ||  || || |||||| ||||||||||    
T  29102864 atgagttttcaagtttagtccctatacaatttaaatgataattttagtcctccaaaatattgtagctttcaaaaatagtccctattttaaaaa 29102956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 50919411 - 50919316
Alignment:
Q  129 aagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaaaa 225  Q
    ||||||||| ||||||||||||||| ||||||||||| ||| ||| ||| | || ||||||| || | ||   ||||||||||||||||| ||||||    
T  50919411 aagtttagtccctataaaattttaatggtaattttagtctt-catgataatgtaatttgtaaaaataatcgatattttaaaaactttttagaaaaaa 50919316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 3891483 - 3891575
Alignment:
Q  129 aagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaaa 224  Q
    ||||||||| ||||||||||||||  |||| |||||| | ||| ||||||| || |||| |||||   || | |||| ||||||||||||||||||    
T  3891483 aagtttagtccctataaaattttattggtagttttagtcctccgtaatattgtaatttgcaagaa---tctctatttaaaaaactttttacaaaaa 3891575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 15800839 - 15800959
Alignment:
Q  122 agttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaa 221  Q
    |||||| ||||||| | ||||||||||||||| | | ||||||| | | ||||||||| ||| || | ||||||  | | ||||| ||||||||||| |     
T  15800839 agtttttaagtttaatccctataaaattttaatgattattttagtcattcataatattgtagcttttgagaacaacctcgattttgaaaacttttta-ag 15800937  T
Q  222 aaaatgaatatttttattcctc 243  Q
    |||||| ||||||||| |||||    
T  15800938 aaaatgtatatttttagtcctc 15800959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 37470983 - 37470922
Alignment:
Q  183 gtttgtaagaacagtccccattttaaaaactttttacaaaaaatgaatatttttattcctcc 244  Q
    ||||||||||| ||| || |||| ||||||||||||||||||||| ||  ||||| ||||||    
T  37470983 gtttgtaagaatagttcctatttgaaaaactttttacaaaaaatggatgcttttagtcctcc 37470922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 1850637 - 1850685
Alignment:
Q  87 aggttaaatatgttcttaatctctgcaaaattatgagttttcaagttta 135  Q
    ||||||||||| || |||||||||  |||||||| ||||||||||||||    
T  1850637 aggttaaatatatttttaatctctataaaattataagttttcaagttta 1850685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 88 - 242
Target Start/End: Original strand, 34359327 - 34359481
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||| ||  | |||||| ||||||||| ||||||||| | ||||||||||||| ||||||||||  | |||| |||||| |||||||    
T  34359327 ggttaaatatgtttttagtccttacaaaatcatgagtttttaagtttagtccatataaaattttaatggtaattttattcctccaaaatattatagtttg 34359426  T
Q  188 taagaacagtccccattttaaaaactttttacaaaaaatgaatatttttattcct 242  Q
    ||| ||  |||||  |||| |||||||||||||||||||| ||| ||||| ||||    
T  34359427 taaaaatggtccctgttttgaaaactttttacaaaaaatggataattttagtcct 34359481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 244
Target Start/End: Complemental strand, 44447023 - 44446868
Alignment:
Q  89 gttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgt 188  Q
    |||||||||||| ||| || ||  | ||||||||||||| ||||||| | || ||||||||||||  |||||||||| | |  | |||||| ||||||||    
T  44447023 gttaaatatgtttttagtccctatataattatgagtttttaagtttaatcccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgt 44446924  T
Q  189 aagaacagtccccattttaaaaactttttacaaaaaatgaatatttttattcctcc 244  Q
    ||||| |||| |  |||| ||||||||||||||||||||  || ||||| ||||||    
T  44446923 aagaatagtctctgttttgaaaactttttacaaaaaatgtgtacttttagtcctcc 44446868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 88 - 226
Target Start/End: Original strand, 20314884 - 20315022
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||| | ||| || || |||||| | |||||||||| |||||| | ||||||||||||| || |||||||| | |||||||||||  | ||||    
T  20314884 ggttaaatatgcttttagtccctacaaaatcaagagttttcaactttagtccttataaaattttaatggcaattttagtcctccataatattgaattttg 20314983  T
Q  188 taagaacagtccccattttaaaaactttttacaaaaaat 226  Q
    ||| || |||| | ||||| |||| ||||||||||||||    
T  20314984 taataatagtctctattttgaaaattttttacaaaaaat 20315022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 244
Target Start/End: Original strand, 39340767 - 39340921
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| | | || || |||||| |  |||||| ||||||||| |||||||| |||||| ||||||||||| | |||| |||||| |||||||    
T  39340767 ggttaaatatgttttgagtccctacaaaatcactagtttttaagtttagtccctataaagttttaatggtaattttagtcatccaaaatattgtagtttg 39340866  T
Q  188 taagaacagtccccattttaaaaactttttacaaaaaatgaatatttttattcctcc 244  Q
    ||| || |||||| |||||  ||  |||||||||||||||  || ||||| ||||||    
T  39340867 taaaaatagtccctatttt--aatttttttacaaaaaatgtgtacttttagtcctcc 39340921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 244
Target Start/End: Complemental strand, 28769676 - 28769522
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||| || ||  ||||||  |||||||||| || ||| | ||||||||||||| ||| ||||| | | ||||||||||| |||||||    
T  28769676 ggttaaatatgtttttagtccctataaaattccgagttttcaaatt-agt-cttataaaattttaatggtgatttttgtcctccataatattgtagtttg 28769579  T
Q  188 taagaacagtccccattttaaaaactttttacaaaaaatgaatatttttattcctcc 244  Q
    |||||| ||||   ||||||||||||||||||| |||||  ||| ||||| ||||||    
T  28769578 taagaatagtctttattttaaaaactttttacagaaaattgatacttttaatcctcc 28769522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 243
Target Start/End: Complemental strand, 50334805 - 50334650
Alignment:
Q  90 ttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgta 189  Q
    |||||||| || ||| |||||  ||||| |||||||||  | |||| | ||||||||||||||| | ||||||||| |||||| |||||| |||||||||    
T  50334805 ttaaatatatttttagtctctataaaatcatgagttttttactttaatccctataaaattttaatgataattttagtcttccaaaatattgtagtttgta 50334706  T
Q  190 agaacagtccccattttaaaaac--tttttacaaaaaatgaatatttttattcctc 243  Q
    | |  ||| || ||||| || ||  ||||||||||||||| ||||||||| |||||    
T  50334705 aaattagttcctattttgaatactttttttacaaaaaatggatatttttagtcctc 50334650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 20336777 - 20336868
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatatt 179  Q
    ||||||||||||| ||| || || |||||| | |||||||||| |||||| | ||||||||||||| ||||||||||| | |||||||||||    
T  20336777 ggttaaatatgtttttagtccctacaaaatcaagagttttcaactttagtccttataaaattttaatggtaattttagtcctccataatatt 20336868  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 22853506 - 22853406
Alignment:
Q  124 ttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaa 223  Q
    ||||||||||||||  || ||||||||||| ||||||||||| | |||||||||||||| ||||||| || |||||  |||||||||| ||| ||| |||    
T  22853506 ttttcaagtttagt--ctctaaaattttaatggtaattttagtcctccataatattttaatttgtaaaaatagtccttattttaaaaaatttatactaaa 22853409  T
Q  224 aat 226  Q
    |||    
T  22853408 aat 22853406  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 13899501 - 13899558
Alignment:
Q  129 aagtttagttcctataaaattttaagggtaattttagccttccataatattttagttt 186  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||||||||| ||||||    
T  13899501 aagtttagttcctataaaattttaatggtaattttagtcctccataatattgtagttt 13899558  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 45743765 - 45743865
Alignment:
Q  127 tcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaaaat 226  Q
    |||||||| |||| |||||||||||||  |||| ||||| | |  ||| || | |||||||||||||  ||||| |||||||||||||||||||||||||    
T  45743765 tcaagtttggttcttataaaattttaatagtaactttagtcctttatagtagtgtagtttgtaagaatggtccctattttaaaaactttttacaaaaaat 45743864  T
Q  227 g 227  Q
    |    
T  45743865 g 45743865  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 16876437 - 16876503
Alignment:
Q  145 aaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaa 211  Q
    |||||||||  |||||||||| | ||||||||||| ||||||||||||| |||||| ||||||||||    
T  16876437 aaattttaattgtaattttagtcctccataatattgtagtttgtaagaatagtccctattttaaaaa 16876503  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 51471202 - 51471299
Alignment:
Q  113 aaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaa 210  Q
    ||||||| |||||||||| ||||||| |||||||||||||  | ||||||||  | |||| ||||||  ||||| |||||| ||| || |||||||||    
T  51471202 aaaattaagagttttcaattttagtttctataaaattttattgataattttactcctccacaatattaaagtttataagaatagttcctattttaaaa 51471299  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 16876078 - 16876145
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggt 157  Q
    ||||||||||||| ||| || |  |||||| | || |||||||||||||| |||||||||||||||||||    
T  16876078 ggttaaatatgtttttagtccc--caaaatcacgatttttcaagtttagtccctataaaattttaagggt 16876145  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 52423006 - 52423081
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttag 165  Q
    |||||||||||||  || || || |||||| | ||||||||||||||||| |||||||| ||| || |||||||||||    
T  52423006 ggttaaatatgtt--tagtccctacaaaatcacgagttttcaagtttagtccctataaagtttcaatggtaattttag 52423081  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 16607703 - 16607667
Alignment:
Q  129 aagtttagttcctataaaattttaagggtaattttag 165  Q
    ||||||||||||||||||||||||| | |||||||||    
T  16607703 aagtttagttcctataaaattttaatgataattttag 16607667  T

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Target: scaffold0720 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 5636 - 5500
Alignment:
Q  89 gttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgt 188  Q
    |||||||||||| ||| || || |||||| ||||||||| ||| || || ||||| ||||||||| ||||  ||||| | |||| |||||||||||||||    
T  5636 gttaaatatgtttttagtccctacaaaatcatgagtttttaagcttggtccctatgaaattttaatggtatatttagtcctccaaaatattttagtttgt 5537  T
Q  189 aagaacagtccccattttaaaaactttttacaaaaaa 225  Q
    || |  |||||| ||||| |||||||| |||||||||    
T  5536 aaaagtagtccctattttgaaaactttatacaaaaaa 5500  T

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Target: scaffold0233 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 17100 - 16956
Alignment:
Q  83 aaaaaggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatatttta 182  Q
    |||||||||||||||||| ||| || ||  ||||| | ||||||||| ||||| | ||||||||||||||| ||||||||||| | | || |||||   |    
T  17100 aaaaaggttaaatatgtttttagtccctataaaatcacgagttttcaggtttaatccctataaaattttaatggtaattttagtcctacaaaatatagca 17001  T
Q  183 gtttgtaagaacagtccccattttaaaaactttttacaaaaaatg 227  Q
     |||||||||| |||||| ||||| ||||| |||||| |||||||    
T  17000 atttgtaagaatagtccctattttgaaaacgttttactaaaaatg 16956  T

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Target: scaffold0005 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 244
Target Start/End: Complemental strand, 253892 - 253762
Alignment:
Q  113 aaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaac 212  Q
    ||||||||||||||| ||||||||||| |||||||||||||  |||||||||| | |  | |||||| ||||||||||| | |||| | ||||| |||      
T  253892 aaaattatgagtttttaagtttagttcatataaaattttaatagtaattttagtcctttaaaatattatagtttgtaaggatagtctctatttt-aaact 253794  T
Q  213 tttttacaaaaaatgaatatttttattcctcc 244  Q
    ||||||||||||||| ||| ||||| ||||||    
T  253793 tttttacaaaaaatggatacttttaatcctcc 253762  T

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Target: scaffold0005; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 33596 - 33481
Alignment:
Q  129 aagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaaaatga 228  Q
    ||||||||||||||||||||||||| | |||||||||   |||| || ||| || ||| ||| || | ||| |||||| | |||||||||||||||||      
T  33596 aagtttagttcctataaaattttaatgataattttagttctccaaaaaattataatttttaataataatcctcatttttataactttttacaaaaaatag 33497  T
Q  229 atatttttattcctcc 244  Q
    ||||||||| ||||||    
T  33496 atatttttagtcctcc 33481  T

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Target: scaffold0036 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 48540 - 48461
Alignment:
Q  146 aattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaaaa 225  Q
    |||||||| ||||||||||| | ||||||| ||| |||||| |||||||||||||  |||| ||||||||||||||||||    
T  48540 aattttaatggtaattttagtcctccataaaattgtagtttataagaacagtccctcttttgaaaactttttacaaaaaa 48461  T

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Target: scaffold1911 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1911
Description:

Target: scaffold1911; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 1 - 95
Alignment:
Q  112 caaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccatttt 206  Q
    |||||| ||||||||| ||| ||||| ||||| ||||||||| ||||||||||| | |||| ||||||| ||||||| | || |||||| |||||    
T  1 caaaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcctccaaaatatttaagtttgttaaaatagtccctatttt 95  T

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Target: scaffold0478 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 206
Target Start/End: Original strand, 8596 - 8714
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||| || ||  ||||| ||||||||| ||| ||||| || || ||||||||| ||||||||||| | |||| ||||||| ||||||    
T  8596 ggttaaatatgtttttagtccctaaaaaatcatgagtttttaagcttagtcccaatgaaattttaatggtaattttagtcctccaaaatatttaagtttg 8695  T
Q  188 taagaacagtccccatttt 206  Q
    | | || |||||| |||||    
T  8696 ttaaaatagtccctatttt 8714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 206
Target Start/End: Original strand, 3218 - 3335
Alignment:
Q  88 ggttaaatatgttcttaatctctgcaaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttg 187  Q
    ||||||||||||| ||| || || |||||| ||||||||| ||| ||| | ||||| ||||||||| ||||||||||| | | || ||||||| ||||||    
T  3218 ggttaaatatgtttttagtccctacaaaatcatgagtttttaagcttaatccctatgaaattttaatggtaattttagtcct-caaaatatttaagtttg 3316  T
Q  188 taagaacagtccccatttt 206  Q
    | | || |||||| |||||    
T  3317 ttaaaatagtccctatttt 3335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 363203 - 363088
Alignment:
Q  129 aagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaagaacagtccccattttaaaaactttttacaaaaaatga 228  Q
    ||||||||||||||||||||||||| | |||||||||   |||| || ||| || ||| ||| || | |||  ||||| | |||||||||||||||||      
T  363203 aagtttagttcctataaaattttaatgataattttagttctccaaaaaattataatttttaataataatccttatttttagaactttttacaaaaaatag 363104  T
Q  229 atatttttattcctcc 244  Q
    ||||||||| ||||||    
T  363103 atatttttagtcctcc 363088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 19874 - 19796
Alignment:
Q  112 caaaattatgagttttcaagtttagttcctataaaattttaagggtaattttagccttccataatattttagtttgtaa 190  Q
    |||||| |||| |||| | ||||||| ||||||||||||||| ||||||||||| | || | |||||| ||||| ||||    
T  19874 caaaatcatgaatttttatgtttagtccctataaaattttaacggtaattttagtcgtcgaaaatattgtagttagtaa 19796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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