View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4974_low_10 (Length: 287)
Name: NF4974_low_10
Description: NF4974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4974_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 16226215 - 16225955
Alignment:
| Q |
19 |
acttaggatatttgatttcacaccttgcataacaacaatcattcctacaatcatcagtgcatagtcccatcccaatttcgcattgattaactccaaattg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16226215 |
acttaggatatttgatttcacaccttgcataacaacaatcattcctacaatcatcagtgcatagtcccatcccaatttcgcattgattaactccaaattg |
16226116 |
T |
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| Q |
119 |
tcctgttactggatgttcgtaagtacatgtgcataagttgtagaagtcacaactccatcctataggtttaacacctcttccaaaggcttcacattgtgat |
218 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16226115 |
tcctgttacttgatgtgcgtaagtacatgtgcataagttgtagaagtcacaactcgatcctataggtttaacacctcttccaaaggcttcacattgtgat |
16226016 |
T |
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| Q |
219 |
g-----tgtacatgttcatcagcacaattagacacaatgtttgtgcaaacaccttctacct |
274 |
Q |
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| T |
16226015 |
ggacaatgtacatgttcatcagcacaattagccacaatgtttgtgcaaacaccttctacct |
16225955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 16181137 - 16180877
Alignment:
| Q |
19 |
acttaggatatttgatttcacaccttgcataacaacaatcattcctacaatcatcagtgcatagtcccatcccaatttcgcattgattaactccaaattg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16181137 |
acttaggatatttgatttcacaccttgcataacaacaatcattcctacaatcatcggtgcatagtcccatcccaatttcgcattgattaactccaaattg |
16181038 |
T |
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| Q |
119 |
tcctgttactggatgttcgtaagtacatgtgcataagttgtagaagtcacaactccatcctataggtttaacacctcttccaaaggcttcacattgtgat |
218 |
Q |
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| T |
16181037 |
tcctgttactggatgttcgtaagtacatgtgcataagttgtagaagtcacaactccatcctataggtttaacacctcttccaaaggcttcacattgtgat |
16180938 |
T |
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| Q |
219 |
g-----tgtacatgttcatcagcacaattagacacaatgtttgtgcaaacaccttctacct |
274 |
Q |
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| | ||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |
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| T |
16180937 |
ggacaatatacatgttcatgagcacaattagccacaatgtttgtgcaaacaccttcaacct |
16180877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 16207440 - 16207256
Alignment:
| Q |
19 |
acttaggatatttgatttcacaccttgcataacaacaatcattcctacaatcatcagtgcatagtcccatcccaatttcgcattgattaactccaaattg |
118 |
Q |
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|||||||||||||| | ||||||| || |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16207440 |
acttaggatatttgctagtacaccttttatcacaacaatcattcctacaatcactagtgcatagtcccatcccaatactgcattgattaactccaaattg |
16207341 |
T |
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| Q |
119 |
tcctgttactggatgttcgtaagtacatgtgcataagttgtagaagtcacaactccatcctataggtttaacacctcttccaaag |
203 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||| || | |||||||||| ||||| |||||||| |
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| T |
16207340 |
tcctgttactggatgttcataagaacatgtgcataagttgtagaagtcacaattcgtgcttataggtttagcaccttttccaaag |
16207256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 16215824 - 16215664
Alignment:
| Q |
38 |
acaccttgcataacaacaatcattcctacaatcatcagtgcatagtcccatcccaatttcgcattgattaactccaaattgtcctgttactggatgttcg |
137 |
Q |
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||||||||| | ||||||||||| | ||||||| |||||||| |||||||||||||| |||||| ||| || |||| | || || |||| ||| |
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| T |
16215824 |
acaccttgcttcacaacaatcatccatacaatcctcagtgcagagtcccatcccaatatcgcatagatcaa-----aattata-tggta---gatgatcg |
16215734 |
T |
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| Q |
138 |
taagtacatgtgcataagttgtagaagtcacaactccatcctataggtttaacacctcttccaaaggctt |
207 |
Q |
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|||||||| |||||||| ||||||||||||||| || |||||| ||||||||||| |||||||||||| |
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| T |
16215733 |
taagtacaagtgcataaattgtagaagtcacaattcgtgcctataagtttaacaccttttccaaaggctt |
16215664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 16211510 - 16211438
Alignment:
| Q |
135 |
tcgtaagtacatgtgcataagttgtagaagtcacaactccatcctataggtttaacacctcttccaaaggctt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||| ||||| |||| ||||||| ||||| |
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| T |
16211510 |
tcgtaagtacatgtgcataagttgtagaagtcacaattcgtgcctataagtttagcaccacttccaacggctt |
16211438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 16211598 - 16211535
Alignment:
| Q |
38 |
acaccttgcataacaacaatcattcctacaatcatcagtgcatagtcccatcccaatttcgcat |
101 |
Q |
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|||| |||||| |||||||||| |||||||||| | |||||| |||||||||||||| |||||| |
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| T |
16211598 |
acactttgcatcacaacaatcactcctacaatccttagtgcagagtcccatcccaatatcgcat |
16211535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 16220727 - 16220656
Alignment:
| Q |
130 |
gatgttcgtaagtacatgtgcataagttgtagaagtcacaactccatcctataggtttaacacctcttccaa |
201 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||||||| || |||||| ||||| |||| ||||||| |
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| T |
16220727 |
gatgatcgtaagtacaggtgcataagttgtagaagtcacaattcgtgcctataagtttagcaccacttccaa |
16220656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 16223138 - 16223062
Alignment:
| Q |
127 |
ctggatgttcgtaagtacatgtgcataagttgtagaagtcacaactccatcctataggtttaacacctcttccaaag |
203 |
Q |
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|
||||||||||| ||||||| ||||||| ||| |||||||||||| | || ||| | ||||| |||||||||||||| |
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| T |
16223138 |
ctggatgttcgaaagtacaagtgcataggttatagaagtcacaattatattctaaaagtttagcacctcttccaaag |
16223062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 16223029 - 16222991
Alignment:
| Q |
231 |
atcagcacaattagacacaatgtttgtgcaaacaccttc |
269 |
Q |
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| T |
16223029 |
atcagcacaattagccacaacgtttgtgcaaacaccttc |
16222991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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