View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4974_low_11 (Length: 273)
Name: NF4974_low_11
Description: NF4974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4974_low_11 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 45201411 - 45201151
Alignment:
| Q |
13 |
aatatgatattcccttacaattctgaagtgaaacaaggcctcaatagcagccaaggcaatattaacaggaagtgctaagaacaaagccattgatgtcttt |
112 |
Q |
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| T |
45201411 |
aatatgatattcccttacaattctgaagtgaaacaaggcctcaatagcagccaaggcaatattaacaggaagtgctaagaacaaagccattgatgtcttt |
45201312 |
T |
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| Q |
113 |
ccccttatcaagatacaagctttaagaatcgccgagtatccaccatgtccttccataccagatagaacaagtgacatattgcatatcacaagtgcattgg |
212 |
Q |
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| T |
45201311 |
ccccttatcaagatacaagctttaagaatcgccgagtatccaccatgtccttccataccagatagaacaagtgacatattgcatatcacaagtgcattgg |
45201212 |
T |
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| Q |
213 |
caagaatcacagaaaaaagaattgccccggtcgctgacatgaagaggaggaaactaggtga |
273 |
Q |
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| T |
45201211 |
caagaatcacagaaaaaagaattgccccggtcgctgacatgaagaggaggaaactaggtga |
45201151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 7772855 - 7772954
Alignment:
| Q |
173 |
gatagaacaagtgacatattgcatatcacaagtgcattggcaagaatcacagaaaaaagaattgccccggtcgctgacatgaagaggaggaaactaggtg |
272 |
Q |
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| T |
7772855 |
gatagaccaagtgacatattgcatatcaca-gtgcattggcaataatcacagcaaaaagaactgccctggttgctgacatgaagaggaggaacctaggtg |
7772953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 13580458 - 13580536
Alignment:
| Q |
41 |
tgaaacaaggcctcaatagcagccaaggcaatattaacaggaagtgctaagaacaaagccattgatgtctttcccctta |
119 |
Q |
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| T |
13580458 |
tgaaacaaagcttcaatggcagccaaacctacattaacaggaagtgccaagaacaaagccatcgatgtccgtcccctta |
13580536 |
T |
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