View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4974_low_14 (Length: 242)
Name: NF4974_low_14
Description: NF4974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4974_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 194075 - 193860
Alignment:
| Q |
1 |
caaaaagtcactgccaaaccttttgaggccaacagcttccccagcctcaatagagggttcacgtgtccttgcgccgggaacgatacaacatacaaggaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
194075 |
caaaaagtcactgccaaaccttttgaggccaacagcttccccagcctcaatagagggttcacgtgtccttgcgccgggaacgatacaa-------ggaac |
193983 |
T |
|
| Q |
101 |
acatgctctacaatatcattatcacaccccatttttcctttaatctcattcatctctcgtaatttgttaattaatttccgtgaatgatcagatgatatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
193982 |
acatgctctacaatatcattatcacaccccattttccctttaatctcattcatctctcttaatttgttaattaatttccttgaatgatcagatgatatat |
193883 |
T |
|
| Q |
201 |
atataataatctgagtggcatgt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
193882 |
atataataatctgagtggcatgt |
193860 |
T |
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