View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4974_low_16 (Length: 238)
Name: NF4974_low_16
Description: NF4974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4974_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 23733070 - 23733297
Alignment:
| Q |
1 |
ttgttagaacttagaaatataatttattgagcgaatgaatttgttgaatggtgccttctgtggtaatcgaatggtgcttgaaatatacgatgcatctgtt |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23733070 |
ttgttataacttagaaatataatttattgagcgaatgaatttggggaatggtgccttctgtggtgatcgaatggtgcttgaaatataccatgcatctgtt |
23733169 |
T |
|
| Q |
101 |
tcttttaattgttgagtattggttttacttcttctatgttgtggtgccttttcattg-cgttatgacacatggaatatgcgactaacaaggtatatgaat |
199 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23733170 |
tcttttaattgttgagtatt-gttttacttcgtctatgttatggtgccttttcattgaggttatgacacatggaatatgcgactaacaaggtaaatgaat |
23733268 |
T |
|
| Q |
200 |
atggacctcagaaacctgtcttgatgatg |
228 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |
|
|
| T |
23733269 |
atggaccttagaaacctctcttgatgatg |
23733297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 23730205 - 23730424
Alignment:
| Q |
8 |
aacttagaaatataatttattgagcgaatgaatttgttgaatggtgccttctgtggtaatcgaatggtgcttgaaatatacgatgcatctgtttctttta |
107 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23730205 |
aacttagaaatataatttattgaccgtatgaatttgtggaatggtgccttctgtggtgatcgaatggtgcttgaaatatac-atgcatctgtttctttta |
23730303 |
T |
|
| Q |
108 |
attgttgagtattggttttacttcttctatgttgtggtgccttttcatt-gcgttatgacacatggaatatgcgactaacaaggtatatgaatatggacc |
206 |
Q |
| |
|
|||| |||||||| ||||||||||||||| || | || ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23730304 |
attgctgagtatt-attttacttcttctattttatactgtcttttcattaaagttatgacacatggaatatgcgactaacaaggtaaatgaatatggacc |
23730402 |
T |
|
| Q |
207 |
tcagaaacctgtcttgatgatg |
228 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
23730403 |
tcagaaacctctcttgatgatg |
23730424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 23779962 - 23779736
Alignment:
| Q |
1 |
ttgttagaacttagaaatataatttattgagcgaatgaatttgttgaatggtgccttctgtggtaatcgaatggtgcttgaaatatacgatgcat---ct |
97 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||| ||||| || |||| ||||| || ||||||||||||||||||| ||| ||| || |
|
|
| T |
23779962 |
ttgttagaacttagaaatataatttattacatgaatgcatttgtggaatgatgtcttccgtggtgatggaatggtgcttgaaatataagatccatgtcct |
23779863 |
T |
|
| Q |
98 |
gtttcttttaattgttgagtattggttttacttcttctatgttgtggtgccttttcattg-cgttatgacacatggaatatgcgactaacaaggtatatg |
196 |
Q |
| |
|
| ||||||||||||||||||||| | ||| |||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
23779862 |
g-ttcttttaattgttgagtatt-atctta---cttctatgttatggtgtcttttcattgaggttatgacacatggaatatgcgactaacaagatgaatg |
23779768 |
T |
|
| Q |
197 |
aatatggacctcagaaacctgtcttgatgatg |
228 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |
|
|
| T |
23779767 |
aatatggacctcagaaacctctcttgatgatg |
23779736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 23866915 - 23866689
Alignment:
| Q |
1 |
ttgttagaacttagaaatataatttattgagcgaatgaatttgttgaatggtgccttctgtggtaatcgaatggtgcttgaaatatacgatgcat---ct |
97 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||| ||||| || |||| ||||| || ||||||||||||||||||| ||| ||| || |
|
|
| T |
23866915 |
ttgttagaacttagaaatataatttattacatgaatgcatttgtggaatgatgtcttccgtggtgatggaatggtgcttgaaatataagatccatgtcct |
23866816 |
T |
|
| Q |
98 |
gtttcttttaattgttgagtattggttttacttcttctatgttgtggtgccttttcattg-cgttatgacacatggaatatgcgactaacaaggtatatg |
196 |
Q |
| |
|
| ||||||||||||||||||||| | ||| |||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
23866815 |
g-ttcttttaattgttgagtatt-atctta---cttctatgttatggtgtcttttcattgaggttatgacacatggaatatgcgactaacaagatgaatg |
23866721 |
T |
|
| Q |
197 |
aatatggacctcagaaacctgtcttgatgatg |
228 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |
|
|
| T |
23866720 |
aatatggacctcagaaacctctcttgatgatg |
23866689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 184
Target Start/End: Original strand, 23645648 - 23645798
Alignment:
| Q |
37 |
gaatttgttgaatggtgccttctgtggtaatcgaatggtgcttgaaatatacgatgcat---ctgtttcttttaattgttgagtattggttttacttctt |
133 |
Q |
| |
|
|||| ||| |||| |||||||| |||| || | ||||||||||||||||| ||||||| |||||||||||||||| |||||||| |||| |||||| |
|
|
| T |
23645648 |
gaatatgtcgaatagtgccttccatggtgatggtatggtgcttgaaatataagatgcatgtcctgtttcttttaattgctgagtatt-attttccttctt |
23645746 |
T |
|
| Q |
134 |
ctatgttgtggtgccttttcattg-cgttatgacacatggaatatgcgacta |
184 |
Q |
| |
|
|| |||| || || |||||||| | |||||||||||||||| | ||||||| |
|
|
| T |
23645747 |
ctttgttatgctgtcttttcatcgaggttatgacacatggaaaacgcgacta |
23645798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 184
Target Start/End: Complemental strand, 23812926 - 23812776
Alignment:
| Q |
37 |
gaatttgttgaatggtgccttctgtggtaatcgaatggtgcttgaaatatacgatgcat---ctgtttcttttaattgttgagtattggttttacttctt |
133 |
Q |
| |
|
|||| ||| |||| |||||||| |||| || | ||||||||||||||||| ||||||| |||||||||||||||| |||||||| |||| |||||| |
|
|
| T |
23812926 |
gaatatgtcgaatagtgccttccatggtgatggtatggtgcttgaaatataagatgcatgtcctgtttcttttaattgctgagtatt-attttccttctt |
23812828 |
T |
|
| Q |
134 |
ctatgttgtggtgccttttcattg-cgttatgacacatggaatatgcgacta |
184 |
Q |
| |
|
|| |||| || || |||||||| | |||||||||||||||| | ||||||| |
|
|
| T |
23812827 |
ctttgttatgctgtcttttcatcgaggttatgacacatggaaaacgcgacta |
23812776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University