View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4974_low_4 (Length: 388)
Name: NF4974_low_4
Description: NF4974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4974_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 45201161 - 45200793
Alignment:
| Q |
1 |
aaactaggtgaagagtagccaagtgtttcaacaaagctgaaagccaaaaacataatacaaaaagaagttgcatttgctgagataattaagaaacagttgc |
100 |
Q |
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| T |
45201161 |
aaactaggtgaagagtagccaagtgtttcaacaaagctgaaagccaaaaacataatacaaaaagaagttgcatttgctgagataattaagaaacagttgc |
45201062 |
T |
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| Q |
101 |
agatataggtatgaaagagtggcttgtaaagtgctattatcgaagagaatgaaggcggcaaagatggtttattgtgattgagtttaagtgcatgaattat |
200 |
Q |
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| T |
45201061 |
agatataggtatgaaagagtggcttgtaaagtgctattatcgaagagaatgaaggcggcaaagatggtttattgtgattgagtttaagtgcatgaattat |
45200962 |
T |
|
| Q |
201 |
ggatgcttttgcaatcagaaggacagttagtgtgaaaggaagtgaaaagattgaacaagtgattgtttgagaaaccttgaggttaagaatgttgaacaat |
300 |
Q |
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| T |
45200961 |
ggatgcttttgcaatcagaaggacagttagtgtgaaaggaagtgaaaagattgaacaagtgattgtttgagaaaccttgaggttaagaatgttgaacaat |
45200862 |
T |
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| Q |
301 |
agagaataggaaggaaatcctgcagcatcaaaaagagtccttaaacggttataaatttgaggcaaaagg |
369 |
Q |
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| T |
45200861 |
agagaataggaaggaaatcctgcagcatcaaaaagagtccttaaacggttataaatttgaggcaaaagg |
45200793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 356
Target Start/End: Original strand, 7772947 - 7773293
Alignment:
| Q |
4 |
ctaggtgaagagtagccaagtgtttcaacaaagctgaaagccaaaaacataatacaaaaagaagttgcatttgctgagataattaagaaacagttgcaga |
103 |
Q |
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| T |
7772947 |
ctaggtgaagagtagc-aagtgtttcaacaaagttgaaggccaaaaacaccatacaaaaagaagttgaattcgctgagataatccatttacagatgcaga |
7773045 |
T |
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| Q |
104 |
tataggtatgaaagagtggcttgtaaagtgctattatcgaagagaatgaaggcggcaaagatggtttattgtgattgagtttaagtgcatgaattatgga |
203 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||| ||||||| || ||||||||||| |
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| T |
7773046 |
tataggtatgaaagagtggcttgtaaagtgcttttatcaaagagaatgaaggtgacaaagatggtttattgtgatttagtttaaaagcttgaattatgga |
7773145 |
T |
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| Q |
204 |
tgcttttgcaatcagaaggacagttagtgtgaaaggaagtgaaaagattgaacaagtgattgtttgagaaaccttgaggttaagaatgttgaacaataga |
303 |
Q |
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| T |
7773146 |
tgcttttgcaat--gaa-gacattgagtgtgaaaggaagtgaaaagattgaacaagtgattgtttga-aaaacttgaggttaaaaatg-tgaacaatata |
7773240 |
T |
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| Q |
304 |
gaataggaaggaaatcctgcagcatcaaaaagagtccttaaacggttataaat |
356 |
Q |
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| T |
7773241 |
gaataggaaggatatcctgcagcatcaaagagagtccttaaacgattataaat |
7773293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 193 - 338
Target Start/End: Original strand, 13580854 - 13580999
Alignment:
| Q |
193 |
tgaattatggatgcttttgcaatcagaaggacagttagtgtgaaaggaagtgaaaagattgaacaagtgattgtttgagaaaccttgaggttaagaatgt |
292 |
Q |
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||||||||| | ||||||||||| || | | ||| || ||||||||||||| |||||||| ||||||||||||||||||| || |||||||||| |
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| T |
13580854 |
tgaattatgaaagcttttgcaatgaggaaaaaagtgagagtgaaaggaagtgtgaagattgaggaagtgattgtttgagaaactttaaggttaagaacag |
13580953 |
T |
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| Q |
293 |
tgaacaatagagaataggaaggaaatcctgcagcatcaaaaagagt |
338 |
Q |
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| T |
13580954 |
taaacaattgtgatgaagaaggaaagcctgcagcatcaaagagagt |
13580999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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