View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4974_low_5 (Length: 370)

Name: NF4974_low_5
Description: NF4974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4974_low_5
NF4974_low_5
[»] chr5 (16 HSPs)
chr5 (14-352)||(23729760-23730098)
chr5 (14-352)||(23732632-23732970)
chr5 (14-306)||(23780105-23780417)
chr5 (14-306)||(23867058-23867370)
chr5 (14-352)||(23644896-23645256)
chr5 (14-352)||(23813318-23813678)
chr5 (20-306)||(23768862-23769167)
chr5 (20-306)||(23818710-23819015)
chr5 (14-217)||(23674425-23674639)
chr5 (14-217)||(23860172-23860386)
chr5 (237-306)||(23674318-23674387)
chr5 (237-306)||(23860424-23860493)
chr5 (308-352)||(23674200-23674244)
chr5 (308-352)||(23860567-23860611)
chr5 (240-304)||(23687329-23687392)
chr5 (240-304)||(23737310-23737373)


Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 23730098 - 23729760
Alignment:
Q  14 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaacc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23730098 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaaacagaaacgttaaatattgcagcaaattaaagtgattatgcagaaatttaaacc 23729999  T
Q  114 aagagcgcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||    
T  23729998 aagagcgcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatacgccaatagaacaaatacgatagaattatttagtaccaa 23729899  T
Q  214 aatatcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacatactaatgactgggaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  23729898 aatatcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcttttaaccaaccatactaatgactgggaa 23729799  T
Q  314 ttatataaattgaaatgcaataatgcatgaagagataat 352  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  23729798 ttatataaactgaaatgcaataatgcatgaggagataat 23729760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 23732970 - 23732632
Alignment:
Q  14 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaacc 113  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  23732970 gaaatgaacacgttgaaataaagcactgcagaattgtgcaaacaaaacagaaacgctaaatattgcagcaaattaaagtgattatgcagaaatttaaacc 23732871  T
Q  114 aagagcgcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaa 213  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||||||||| ||||||| ||| |||||| ||||| |||||||||||| ||||||||    
T  23732870 aagagcgcaacagtgaaaatatcaaagaatttaaaagcatgatttagagacgaaatgaatacgcctatagaacaaatacgatagaattatttagtaccaa 23732771  T
Q  214 aatatcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacatactaatgactgggaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23732770 aatatcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttatgcagctcatagcaggcatttaaccaaacatactaatgactgggaa 23732671  T
Q  314 ttatataaattgaaatgcaataatgcatgaagagataat 352  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  23732670 ttatctaaactgaaatgcaataatgcatgaagagataat 23732632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 23780105 - 23780417
Alignment:
Q  14 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaacc 113  Q
    |||||||||||||||||||||||||| |||||| |||||||||||| ||||||||   |||||||||||||| | ||||||||||| |||||||||||||    
T  23780105 gaaatgaacacattgaaataaagcacagcagaaatgtgcaaacaaaacagaaacgccgaaaattgcagcaaactgaagtgattatgaagaaatttaaacc 23780204  T
Q  114 aagagcgcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaa 213  Q
    |||| ||| ||||||||||||| |||| | |||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |||    
T  23780205 aagaacgcgacagtgaaaatatcgaagtaattaaaaccatgatttagagaggagatgaatacgccaatagaataaataagatagcattattcagtagcaa 23780304  T
Q  214 aata--------------------tcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaacca 293  Q
    ||||                     | |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  23780305 aataattcccttcaaaagtttaaccccaagtattttgtacagcgtgtgaaagatttgagacattacgaaatttgtgcggctcatagcagacatttaacca 23780404  T
Q  294 aacatactaatga 306  Q
    |||||||||||||    
T  23780405 aacatactaatga 23780417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 23867058 - 23867370
Alignment:
Q  14 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaacc 113  Q
    |||||||||||||||||||||||||| |||||| |||||||||||| ||||||||   |||||||||||||| | ||||||||||| |||||||||||||    
T  23867058 gaaatgaacacattgaaataaagcacagcagaaatgtgcaaacaaaacagaaacgccgaaaattgcagcaaactgaagtgattatgaagaaatttaaacc 23867157  T
Q  114 aagagcgcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaa 213  Q
    |||| ||| ||||||||||||| |||| | |||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |||    
T  23867158 aagaacgcgacagtgaaaatatcgaagtaattaaaaccatgatttagagaggagatgaatacgccaatagaataaataagatagcattattcagtagcaa 23867257  T
Q  214 aata--------------------tcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaacca 293  Q
    ||||                     | |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  23867258 aataattcccttcaaaagtttaaccccaagtattttgtacagcgtgtgaaagatttgagacattacgaaatttgtgcggctcatagcagacatttaacca 23867357  T
Q  294 aacatactaatga 306  Q
    |||||||||||||    
T  23867358 aacatactaatga 23867370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 23645256 - 23644896
Alignment:
Q  14 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattat---gcagaaatttaa 110  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||| |||||||   ||||||||||||    
T  23645256 gaaatgaacacattaaaacaaagcactgcagaattgtgcaaacaaaacagaa-cgctaaaaattgcagcaaactaaaatgattattatgcagaaatttaa 23645158  T
Q  111 accaagagcgcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtac 210  Q
    ||||||| | ||||||||||||||| |||||| ||||||| | ||||  |||| || ||| | | || ||||||||||||||||||  ||| |||| |||    
T  23645157 accaagaacacaacagtgaaaatatcgaagaaattaaaactaagattacgagaggaaatgtacacgctaatagaataaataagatatcattgttcactac 23645058  T
Q  211 caaaatat--------------------cgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaa 290  Q
    |||||||                     | ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  23645057 caaaataattcccttcaaaggattaatcccaagtattttggacagcgtgtgaaagatttaagacattacgaaatttgtacagctcatagcaggcatttaa 23644958  T
Q  291 ccaaacatactaatgactgggaattatataaattgaaatgcaataatgcatgaagagataat 352  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  23644957 ccaaacaaactaatgactgggaattatataaactgaaatgcaataatgcatgaggagataat 23644896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 14 - 352
Target Start/End: Original strand, 23813318 - 23813678
Alignment:
Q  14 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattat---gcagaaatttaa 110  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||| |||||||   ||||||||||||    
T  23813318 gaaatgaacacattaaaacaaagcactgcagaattgtgcaaacaaaacagaa-cgctaaaaattgcagcaaactaaaatgattattatgcagaaatttaa 23813416  T
Q  111 accaagagcgcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtac 210  Q
    ||||||| | ||||||||||||||| |||||| ||||||| | ||||  |||| || ||| | | || ||||||||||||||||||  ||| |||| |||    
T  23813417 accaagaacacaacagtgaaaatatcgaagaaattaaaactaagattacgagaggaaatgtacacgctaatagaataaataagatatcattgttcactac 23813516  T
Q  211 caaaatat--------------------cgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaa 290  Q
    |||||||                     | ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  23813517 caaaataattcccttcaaaggattaatcccaagtattttggacagcgtgtgaaagatttaagacattacgaaatttgtacagctcatagcaggcatttaa 23813616  T
Q  291 ccaaacatactaatgactgggaattatataaattgaaatgcaataatgcatgaagagataat 352  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  23813617 ccaaacaaactaatgactgggaattatataaactgaaatgcaataatgcatgaggagataat 23813678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 23768862 - 23769167
Alignment:
Q  20 aacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagc 119  Q
    ||||| |||||||||| | ||||||| |||| |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23768862 aacaccttgaaataaaccgctgcagacttgttcaaacaaaacagaaacactaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagaac 23768961  T
Q  120 gcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata-- 217  Q
    |||||||| ||||||| |||||| ||||||||| ||||  |||| || ||||| | || |||||||||| |||||||| ||||||||| |||||||||      
T  23768962 gcaacagttaaaatatcgaagaaattaaaaccaagattacgagaggaaatgaacacgctaatagaataattaagatagcattattcag-accaaaataat 23769060  T
Q  218 ------------------tcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacata 299  Q
                       | |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23769061 taccttcaaaggtttaaccccaagtattttggacaacgtgtgaaagatttgagacattacgaaatttgtgcggctcatagcaggcatttaaccaaacata 23769160  T
Q  300 ctaatga 306  Q
    |||||||    
T  23769161 ctaatga 23769167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 23818710 - 23819015
Alignment:
Q  20 aacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagc 119  Q
    ||||| |||||||||| | ||||||| |||| |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23818710 aacaccttgaaataaaccgctgcagacttgttcaaacaaaacagaaacactaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagaac 23818809  T
Q  120 gcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata-- 217  Q
    |||||||| ||||||| |||||| ||||||||| ||||  |||| || ||||| | || |||||||||| |||||||| ||||||||| |||||||||      
T  23818810 gcaacagttaaaatatcgaagaaattaaaaccaagattacgagaggaaatgaacacgctaatagaataattaagatagcattattcag-accaaaataat 23818908  T
Q  218 ------------------tcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacata 299  Q
                       | |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23818909 taccttcaaaggtttaaccccaagtattttggacaacgtgtgaaagatttgagacattacgaaatttgtgcggctcatagcaggcatttaaccaaacata 23819008  T
Q  300 ctaatga 306  Q
    |||||||    
T  23819009 ctaatga 23819015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 23674639 - 23674425
Alignment:
Q  14 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtg---attatgcagaaa-ttta 109  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| |||| ||   |||||||||||| ||||    
T  23674639 gaaaagaatacattaaaataaagcactgcagaattgtgcaaacaaaacagaaatgctaaaaattgcagcaaactaaactgattattatgcagaaatttta 23674540  T
Q  110 aaccaagagcgcaacagtgaaaatattgaagaatttaaaaccatgatt-------tagagacgagatgaatatgccaatagaataaataagatagaatta 202  Q
    |||||||| ||||||||||||||||| |||||| ||||||||| ||||       | |||| || ||||| | || |||||| |||||||||| | |||     
T  23674539 aaccaagaacgcaacagtgaaaatatcgaagaaattaaaaccaagattacgagagtcgagaggaaatgaacacgcaaatagagtaaataagattgcattg 23674440  T
Q  203 ttcagtaccaaaata 217  Q
    |||||||||||||||    
T  23674439 ttcagtaccaaaata 23674425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 23860172 - 23860386
Alignment:
Q  14 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtg---attatgcagaaa-ttta 109  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| |||| ||   |||||||||||| ||||    
T  23860172 gaaaagaatacattaaaataaagcactgcagaattgtgcaaacaaaacagaaatgctaaaaattgcagcaaactaaactgattattatgcagaaatttta 23860271  T
Q  110 aaccaagagcgcaacagtgaaaatattgaagaatttaaaaccatgatt-------tagagacgagatgaatatgccaatagaataaataagatagaatta 202  Q
    |||||||| ||||||||||||||||| |||||| ||||||||| ||||       | |||| || ||||| | || |||||| |||||||||| | |||     
T  23860272 aaccaagaacgcaacagtgaaaatatcgaagaaattaaaaccaagattacgagagtcgagaggaaatgaacacgcaaatagagtaaataagattgcattg 23860371  T
Q  203 ttcagtaccaaaata 217  Q
    |||||||||||||||    
T  23860372 ttcagtaccaaaata 23860386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 23674387 - 23674318
Alignment:
Q  237 gtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacatactaatga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  23674387 gtgtgaaagatttgagacattacgaaatttgtgcagctcatagaaggcatttaaccaaacatacaaatga 23674318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 23860424 - 23860493
Alignment:
Q  237 gtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacatactaatga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  23860424 gtgtgaaagatttgagacattacgaaatttgtgcagctcatagaaggcatttaaccaaacatacaaatga 23860493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 23674244 - 23674200
Alignment:
Q  308 tgggaattatataaattgaaatgcaataatgcatgaagagataat 352  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||    
T  23674244 tgggaattatataaactgaaatgcaataatgcatgaggagataat 23674200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 23860567 - 23860611
Alignment:
Q  308 tgggaattatataaattgaaatgcaataatgcatgaagagataat 352  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||    
T  23860567 tgggaattatataaactgaaatgcaataatgcatgaggagataat 23860611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 23687392 - 23687329
Alignment:
Q  240 tgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacatactaat 304  Q
    |||||| ||||||| ||||| ||||||||||| ||||||| ||||||| || ||||| |||||||    
T  23687392 tgaaaggtttgagatattacaaaatttgtgcaactcatagaaggcattcaa-caaacttactaat 23687329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 23737373 - 23737310
Alignment:
Q  240 tgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacatactaat 304  Q
    |||||| ||||||| ||||| ||||||||||| ||||||| ||||||| || ||||| |||||||    
T  23737373 tgaaaggtttgagatattacaaaatttgtgcaactcatagaaggcattcaa-caaacttactaat 23737310  T

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