View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4974_low_6 (Length: 367)
Name: NF4974_low_6
Description: NF4974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4974_low_6 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 207 - 367
Target Start/End: Original strand, 3093499 - 3093666
Alignment:
| Q |
207 |
agtaataagccaaaattcaaactaataaaagtt-----tcttaatata--tggaatactatcagagacaattcctatatctcagcatggccatattcaag |
299 |
Q |
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| T |
3093499 |
agtaataagacaaaattcaaactaataaaagttatttttattaatatagatggaataccatcaaagacaattcccatatctcatcatggccatattcaag |
3093598 |
T |
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| Q |
300 |
gagaggatacatataatgcagatctaccaataatccctttaatatggattcgacaaagcactaataac |
367 |
Q |
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| T |
3093599 |
gagaggatacatataatgcagacctcccaataatccctttaatatggattcgacaaagcactaataac |
3093666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 194 - 367
Target Start/End: Original strand, 3079001 - 3079180
Alignment:
| Q |
194 |
gtatctcacatatagtaataagccaaaattcaaactaataaaagtttctt----aatata--tggaatactatcagagacaattcctatatctcagcatg |
287 |
Q |
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| T |
3079001 |
gtatttcacatatagtaataagataaaattcaaactaataaaagttttattttaaatacagatggactaccatcaaagacaactcctatatctcaacatg |
3079100 |
T |
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| Q |
288 |
gccatattcaaggagaggatacatataatgcagatctaccaataatccctttaatatggattcgacaaagcactaataac |
367 |
Q |
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| T |
3079101 |
gccatattcaaggagaggatacatataatgcagacctcccaataatccctttaatatggattcgacaaagcactaataac |
3079180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 209 - 367
Target Start/End: Complemental strand, 4549937 - 4549777
Alignment:
| Q |
209 |
taataagccaaaattcaaactaataaaagtttcttaatata--tggaatactatcagagacaattcctatatctcagcatggccatattcaaggagagga |
306 |
Q |
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| T |
4549937 |
taataagtaaaaattcaaactaataaaagtttcttaatatagatcgactagcatcaaagaaaattcctatatctcatcctggccatactcaaggagagga |
4549838 |
T |
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| Q |
307 |
tacatataatgcagatctaccaataatccctttaatatggattcgacaaagcactaataac |
367 |
Q |
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| T |
4549837 |
tacatataatgcagacctcccaataatccctttaatttggattcgacaaagcactaataac |
4549777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 3093298 - 3093348
Alignment:
| Q |
129 |
gtcgtggtatcttatattttggacattataggtgtctatgtatctgtatcg |
179 |
Q |
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| T |
3093298 |
gtcgtggtattttatatcttggacattattagtgtctatgtatttgtatcg |
3093348 |
T |
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