View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4974_low_8 (Length: 317)

Name: NF4974_low_8
Description: NF4974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4974_low_8
NF4974_low_8
[»] chr4 (19 HSPs)
chr4 (240-306)||(32212729-32212795)
chr4 (171-230)||(32212826-32212885)
chr4 (169-230)||(25479638-25479699)
chr4 (240-306)||(45047160-45047226)
chr4 (171-230)||(26417139-26417198)
chr4 (172-230)||(6078046-6078104)
chr4 (172-230)||(8757312-8757370)
chr4 (171-230)||(29628066-29628125)
chr4 (171-230)||(36219012-36219071)
chr4 (240-306)||(8757410-8757476)
chr4 (240-306)||(22702327-22702393)
chr4 (240-306)||(22991724-22991790)
chr4 (240-298)||(25479730-25479788)
chr4 (186-226)||(26698962-26699002)
chr4 (243-272)||(1586470-1586499)
chr4 (241-298)||(17694404-17694461)
chr4 (263-300)||(29627971-29628008)
chr4 (240-301)||(41248359-41248416)
chr4 (171-227)||(54998073-54998129)
[»] chr7 (12 HSPs)
chr7 (238-306)||(33815968-33816036)
chr7 (240-306)||(25795862-25795928)
chr7 (240-306)||(42710526-42710592)
chr7 (171-230)||(958136-958195)
chr7 (174-227)||(33881981-33882034)
chr7 (240-304)||(9486856-9486920)
chr7 (243-275)||(17603886-17603918)
chr7 (171-219)||(17603963-17604010)
chr7 (240-274)||(33174126-33174160)
chr7 (176-217)||(36655605-36655646)
chr7 (171-230)||(37503817-37503877)
chr7 (171-230)||(44484126-44484186)
[»] chr1 (22 HSPs)
chr1 (240-305)||(42483747-42483812)
chr1 (240-306)||(32913876-32913942)
chr1 (240-298)||(33603493-33603551)
chr1 (171-218)||(7712366-7712414)
chr1 (171-230)||(33259571-33259631)
chr1 (171-230)||(33279730-33279790)
chr1 (238-305)||(42401016-42401083)
chr1 (240-306)||(7712257-7712323)
chr1 (188-230)||(37583179-37583221)
chr1 (240-273)||(7789729-7789762)
chr1 (240-305)||(8444942-8445007)
chr1 (243-294)||(32544976-32545027)
chr1 (240-306)||(5040999-5041065)
chr1 (240-302)||(20360335-20360396)
chr1 (240-302)||(20550574-20550635)
chr1 (177-230)||(42400942-42400996)
chr1 (243-305)||(43384002-43384064)
chr1 (240-273)||(5114085-5114118)
chr1 (171-219)||(5827460-5827509)
chr1 (240-292)||(31206390-31206443)
chr1 (240-305)||(31827170-31827235)
chr1 (171-230)||(35615632-35615692)
[»] chr3 (11 HSPs)
chr3 (246-306)||(48457937-48457997)
chr3 (171-230)||(377026-377086)
chr3 (238-305)||(24744453-24744520)
chr3 (240-306)||(7885974-7886039)
chr3 (240-274)||(53143559-53143593)
chr3 (171-230)||(48457848-48457908)
chr3 (173-230)||(7885885-7885943)
chr3 (240-306)||(45707654-45707720)
chr3 (174-230)||(31720290-31720347)
chr3 (185-230)||(45707578-45707623)
chr3 (171-230)||(17378688-17378748)
[»] chr2 (10 HSPs)
chr2 (242-306)||(27974530-27974594)
chr2 (242-306)||(28061059-28061123)
chr2 (176-230)||(39445786-39445840)
chr2 (240-307)||(45154324-45154391)
chr2 (245-306)||(27974462-27974523)
chr2 (245-306)||(28060991-28061052)
chr2 (171-230)||(11512056-11512116)
chr2 (240-300)||(18379873-18379933)
chr2 (240-306)||(39445871-39445937)
chr2 (252-298)||(4633951-4633997)
[»] chr5 (12 HSPs)
chr5 (240-307)||(30471755-30471822)
chr5 (241-306)||(4942455-4942520)
chr5 (169-230)||(33494864-33494925)
chr5 (240-304)||(36974175-36974239)
chr5 (246-299)||(38037388-38037441)
chr5 (240-297)||(39955160-39955217)
chr5 (240-275)||(5367720-5367755)
chr5 (169-230)||(4942552-4942614)
chr5 (169-230)||(13417395-13417457)
chr5 (169-215)||(36974284-36974330)
chr5 (241-306)||(15558603-15558668)
chr5 (240-273)||(33494800-33494833)
[»] chr8 (4 HSPs)
chr8 (240-298)||(1421895-1421953)
chr8 (171-230)||(10287958-10288017)
chr8 (238-278)||(9415517-9415557)
chr8 (257-305)||(24848939-24848987)
[»] chr6 (5 HSPs)
chr6 (240-306)||(11703210-11703276)
chr6 (243-300)||(24141400-24141457)
chr6 (240-290)||(31632376-31632426)
chr6 (246-306)||(30250341-30250401)
chr6 (174-217)||(31632470-31632514)
[»] scaffold0092 (1 HSPs)
scaffold0092 (240-299)||(4863-4922)
[»] scaffold0040 (1 HSPs)
scaffold0040 (183-225)||(55905-55948)
[»] scaffold0067 (1 HSPs)
scaffold0067 (243-275)||(283-315)


Alignment Details
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 32212795 - 32212729
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  32212795 ttgttgaaatgtaaatgataaagagttattggtgggacccatttagaccttttgttagagggtctct 32212729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 32212885 - 32212826
Alignment:
Q  171 gtctcttaagatccagggtctcacttaagaccccattcttaagtggacctcacaccactt 230  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||    
T  32212885 gtctcttaagacccagggtctcacttaagacctcattcttaagtagacctcacaccactt 32212826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 25479638 - 25479699
Alignment:
Q  169 gagtctcttaagatccagggtctcacttaagaccccattcttaagtggacctcacaccactt 230  Q
    ||||||||||||| ||| ||| ||||||||||||||||||||||||||| ||||||||||||    
T  25479638 gagtctcttaagacccaaggtttcacttaagaccccattcttaagtggatctcacaccactt 25479699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 45047226 - 45047160
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    ||||||||||||||||||||||||| |||||||||| |   |||| |||||||||||||||||||||    
T  45047226 ttgttgaaatgtaaatgataaagagctattggtgggtctcatttaaacattttgttagagggtctct 45047160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 26417139 - 26417198
Alignment:
Q  171 gtctcttaagatccagggtctcacttaagaccccattcttaagtggacctcacaccactt 230  Q
    ||||||||||| || |||||||||||||||||||| ||||||||| ||| ||||||||||    
T  26417139 gtctcttaagacccggggtctcacttaagaccccaatcttaagtgaaccccacaccactt 26417198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 6078104 - 6078046
Alignment:
Q  172 tctcttaagatccagggtctcacttaagaccccattcttaagtggacctcacaccactt 230  Q
    |||||||||| |||||||||||||||||| |  |||||||||||||||||||| |||||    
T  6078104 tctcttaagacccagggtctcacttaagatcatattcttaagtggacctcacaacactt 6078046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 8757312 - 8757370
Alignment:
Q  172 tctcttaagatccagggtctcacttaagaccccattcttaagtggacctcacaccactt 230  Q
    ||||||||||||||| ||||||||||||||| ||||||||| || | ||||||||||||    
T  8757312 tctcttaagatccagagtctcacttaagacctcattcttaactgaatctcacaccactt 8757370  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 29628125 - 29628066
Alignment:
Q  171 gtctcttaagatccagggtctcacttaagaccccattcttaagtggacctcacaccactt 230  Q
    |||||||||||  |||||||| ||||||||||||| | ||||||||||| ||||||||||    
T  29628125 gtctcttaagactcagggtcttacttaagaccccaattttaagtggaccccacaccactt 29628066  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 36219012 - 36219071
Alignment:
Q  171 gtctcttaagatccagggtctcacttaagaccccattcttaagtggacctcacaccactt 230  Q
    ||||||||||||||| ||||| ||||||  ||||| ||||||||||||| ||||||||||    
T  36219012 gtctcttaagatccaaggtctaacttaaacccccaatcttaagtggaccccacaccactt 36219071  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 8757410 - 8757476
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    |||||||||||||||||||||| |||||||| || || |  ||||||||||||| |||||| |||||    
T  8757410 ttgttgaaatgtaaatgataaaaagttattgatgtgatccatttagacattttggtagaggatctct 8757476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 22702393 - 22702327
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    ||||| |||| ||||||||||||||||||||| | | ||  ||||||||||||||||||| ||||||    
T  22702393 ttgttaaaatataaatgataaagagttattggcgagtcccatttagacattttgttagagagtctct 22702327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 22991724 - 22991790
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    ||||| |||| ||||||||||||||||||||| | | ||  ||||||||||||||||||| ||||||    
T  22991724 ttgttaaaatataaatgataaagagttattggcgagtcccatttagacattttgttagagagtctct 22991790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 25479730 - 25479788
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttaga 298  Q
    |||||||||||||||||||||||||||||||| ||||    |||| |||||||||||||    
T  25479730 ttgttgaaatgtaaatgataaagagttattggagggagtcatttatacattttgttaga 25479788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 26698962 - 26699002
Alignment:
Q  186 gggtctcacttaagaccccattcttaagtggacctcacacc 226  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  26698962 gggtctcacttaagaccccattcttaagtgggactcacacc 26699002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Original strand, 1586470 - 1586499
Alignment:
Q  243 ttgaaatgtaaatgataaagagttattggt 272  Q
    ||||||||||||||||||||||||||||||    
T  1586470 ttgaaatgtaaatgataaagagttattggt 1586499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 17694404 - 17694461
Alignment:
Q  241 tgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttaga 298  Q
    ||||| |||||||||||| |||||||| ||||| ||||  ||||||| ||||||||||    
T  17694404 tgttggaatgtaaatgatgaagagttagtggtgagaccgatttagaccttttgttaga 17694461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 29628008 - 29627971
Alignment:
Q  263 agttattggtgggacctgtttagacattttgttagagg 300  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  29628008 agttattggtgggacctatttagacattttgatagagg 29627971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 41248359 - 41248416
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagaggg 301  Q
    ||||||||||||||||||||||||||     ||||||||  ||||||| |||||||||||||    
T  41248359 ttgttgaaatgtaaatgataaagagta----gtgggacccatttagaccttttgttagaggg 41248416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 54998073 - 54998129
Alignment:
Q  171 gtctcttaagatccagggtctcacttaagaccccattcttaagtggacctcacacca 227  Q
    ||||||||||| || |||||||||||||||||  | ||||||||||| | |||||||    
T  54998073 gtctcttaagacccggggtctcacttaagaccttaatcttaagtggaacccacacca 54998129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 33816036 - 33815968
Alignment:
Q  238 tattgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    ||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||    
T  33816036 tattgttgaaatgtaaatgatgaagagttagtggtgggaccggtttagacattttgttagaggatctct 33815968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 25795928 - 25795862
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    ||||||||||||||||||||||||||||||||||||  |  ||||||| |||||||||||| |||||    
T  25795928 ttgttgaaatgtaaatgataaagagttattggtgggttccatttagaccttttgttagaggatctct 25795862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 42710592 - 42710526
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    ||||||||||||||||||||||||||||||||| || |   ||||||| ||||||||||||||||||    
T  42710592 ttgttgaaatgtaaatgataaagagttattggttggtctcatttagaccttttgttagagggtctct 42710526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 958195 - 958136
Alignment:
Q  171 gtctcttaagatccagggtctcacttaagaccccattcttaagtggacctcacaccactt 230  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||||||||| ||||| ||||    
T  958195 gtctcttaagacccagggtctaacttaagaccccaatcttaagtggaccacacacaactt 958136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 33881981 - 33882034
Alignment:
Q  174 tcttaagatccagggtctcacttaagaccccattcttaagtggacctcacacca 227  Q
    |||||||||||||||||| ||||||||||||| | ||||||||| | |||||||    
T  33881981 tcttaagatccagggtctaacttaagaccccaattttaagtggatcccacacca 33882034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 9486920 - 9486856
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtct 304  Q
    ||||| ||||||||||||||||||||||||||||   |   |||||||||||||||| |||||||    
T  9486920 ttgttaaaatgtaaatgataaagagttattggtgtagctcatttagacattttgttatagggtct 9486856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 17603918 - 17603886
Alignment:
Q  243 ttgaaatgtaaatgataaagagttattggtggg 275  Q
    |||||||||||||||||||||||||||||||||    
T  17603918 ttgaaatgtaaatgataaagagttattggtggg 17603886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 17604010 - 17603963
Alignment:
Q  171 gtctcttaagatccagggtctcacttaagaccccattcttaagtggacc 219  Q
    ||||||||||| || |||||||||||||||| |||||||||||||||||    
T  17604010 gtctcttaagaccc-gggtctcacttaagactccattcttaagtggacc 17603963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 33174160 - 33174126
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgg 274  Q
    ||||||||||||| |||||||||||||||||||||    
T  33174160 ttgttgaaatgtatatgataaagagttattggtgg 33174126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 36655605 - 36655646
Alignment:
Q  176 ttaagatccagggtctcacttaagaccccattcttaagtgga 217  Q
    ||||||||||| ||||||||||||||| ||| ||||||||||    
T  36655605 ttaagatccagagtctcacttaagacctcatgcttaagtgga 36655646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 37503817 - 37503877
Alignment:
Q  171 gtctcttaagatccagggtctcacttaaga-ccccattcttaagtggacctcacaccactt 230  Q
    |||||||||||  || |||||||||||||| ||||| ||||||||||| | ||||||||||    
T  37503817 gtctcttaagacacatggtctcacttaagacccccaatcttaagtggatcccacaccactt 37503877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 44484186 - 44484126
Alignment:
Q  171 gtctcttaagatccagggtctcacttaaga-ccccattcttaagtggacctcacaccactt 230  Q
    ||||||||||| ||| ||||| |||||||| ||||| ||||||||||| | ||||||||||    
T  44484186 gtctcttaagacccaaggtctaacttaagacccccagtcttaagtggatcccacaccactt 44484126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 42483812 - 42483747
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctc 305  Q
    ||||||||||||||||||||| |||||||||||||||||   ||||| ||||||||||||||||||    
T  42483812 ttgttgaaatgtaaatgataatgagttattggtgggacccagttagatattttgttagagggtctc 42483747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 32913876 - 32913942
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    |||||||||||||||||||||||||||||| ||||||||  ||||  | |||||||||||| |||||    
T  32913876 ttgttgaaatgtaaatgataaagagttattagtgggacccatttaagctttttgttagaggttctct 32913942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 33603551 - 33603493
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttaga 298  Q
    |||||||||||||||||||||||||||||||||  ||||  |||| |||||||||||||    
T  33603551 ttgttgaaatgtaaatgataaagagttattggtatgacccatttaaacattttgttaga 33603493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 7712414 - 7712366
Alignment:
Q  171 gtctcttaagatccagggtctcacttaagacccc-attcttaagtggac 218  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  7712414 gtctcttaagacccagggtctcacttaagaccccaattcttaagtggac 7712366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 33259631 - 33259571
Alignment:
Q  171 gtctcttaagatccagggtctcacttaaga-ccccattcttaagtggacctcacaccactt 230  Q
    ||||||||||| || |||||||||||| || ||||||||||||||||||| ||||||||||    
T  33259631 gtctcttaagacccggggtctcacttatgatccccattcttaagtggaccccacaccactt 33259571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 33279790 - 33279730
Alignment:
Q  171 gtctcttaagatccagggtctcacttaaga-ccccattcttaagtggacctcacaccactt 230  Q
    ||||||||||| || |||||||||||| || ||||||||||||||||||| ||||||||||    
T  33279790 gtctcttaagacccggggtctcacttatgatccccattcttaagtggaccccacaccactt 33279730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 42401016 - 42401083
Alignment:
Q  238 tattgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctc 305  Q
    |||||||| |||||||||||| |||||||  ||||||||||  ||||||| |||||| ||||||||||    
T  42401016 tattgttggaatgtaaatgatgaagagttcgtggtgggaccgatttagaccttttgtcagagggtctc 42401083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 7712323 - 7712257
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    |||||||||||||||||||||| |||||||| || || |  |||||||||||||||| ||| |||||    
T  7712323 ttgttgaaatgtaaatgataaaaagttattgttgagatccatttagacattttgttataggatctct 7712257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 37583221 - 37583179
Alignment:
Q  188 gtctcacttaagaccccattcttaagtggacctcacaccactt 230  Q
    |||||||||||||||||||| ||||||||||||||||| ||||    
T  37583221 gtctcacttaagaccccatttttaagtggacctcacactactt 37583179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 7789729 - 7789762
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtg 273  Q
    ||||||||||||||||||||||||||||||||||    
T  7789729 ttgttgaaatgtaaatgataaagagttattggtg 7789762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 8444942 - 8445007
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctc 305  Q
    |||||||||||||||| |||||||||||||| || ||| | ||||||| |||||||| ||| ||||    
T  8444942 ttgttgaaatgtaaataataaagagttattgatgagacttatttagaccttttgttaaaggatctc 8445007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 32544976 - 32545027
Alignment:
Q  243 ttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgt 294  Q
    ||||||||||||| ||||||||||||| || |||||  ||||||||||||||    
T  32544976 ttgaaatgtaaataataaagagttattagtaggacccatttagacattttgt 32545027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 5041065 - 5040999
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    |||||||||| ||||||||||| ||||||||||||||    |||| ||||||||||| ||| |||||    
T  5041065 ttgttgaaatataaatgataaaaagttattggtgggattcatttacacattttgttacaggctctct 5040999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 302
Target Start/End: Complemental strand, 20360396 - 20360335
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggt 302  Q
    |||||||||||||||||||||||| || ||  || ||||  ||||||||||||||||||||||    
T  20360396 ttgttgaaatgtaaatgataaagaatt-ttaatgtgaccgatttagacattttgttagagggt 20360335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 20550574 - 20550635
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggt 302  Q
    |||||||||||||||||||||||| || ||  || ||||  ||||||||||||||||||||||    
T  20550574 ttgttgaaatgtaaatgataaagaatt-ttaatgtgaccgatttagacattttgttagagggt 20550635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 42400942 - 42400996
Alignment:
Q  177 taagatccagggtctcacttaagaccc-cattcttaagtggacctcacaccactt 230  Q
    ||||| |||||||||||||||||||||  ||||||||||||||| ||||| ||||    
T  42400942 taagacccagggtctcacttaagacccttattcttaagtggaccccacactactt 42400996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 43384064 - 43384002
Alignment:
Q  243 ttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctc 305  Q
    |||||||||||||||| ||||||||||| ||||| |  ||||||| |||||||| ||| ||||    
T  43384064 ttgaaatgtaaatgatgaagagttattgttgggaaccatttagactttttgttataggatctc 43384002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 5114118 - 5114085
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtg 273  Q
    ||||||||||||||||||| ||||||||||||||    
T  5114118 ttgttgaaatgtaaatgatgaagagttattggtg 5114085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 5827460 - 5827509
Alignment:
Q  171 gtctcttaagatccagggtctcacttaagacccc-attcttaagtggacc 219  Q
    |||||||||||  ||||||||||||||||||||| | |||||||||||||    
T  5827460 gtctcttaagactcagggtctcacttaagaccccaaatcttaagtggacc 5827509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 31206443 - 31206390
Alignment:
Q  240 ttgttgaaatgtaaatgataaa-gagttattggtgggacctgtttagacatttt 292  Q
    |||||||||| ||||||||||| ||||||||||||||| |  ||||||||||||    
T  31206443 ttgttgaaatataaatgataaaagagttattggtgggatccatttagacatttt 31206390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 31827170 - 31827235
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctc 305  Q
    |||||||||||||||||||||| | ||||| | | |||   ||||||||||||||||||| |||||    
T  31827170 ttgttgaaatgtaaatgataaataattattagagagactcatttagacattttgttagagtgtctc 31827235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 35615692 - 35615632
Alignment:
Q  171 gtctcttaagatccagggtctcacttaagaccc-cattcttaagtggacctcacaccactt 230  Q
    ||||||||||| | ||||||| ||||||||||| |||| ||||||||| | ||||||||||    
T  35615692 gtctcttaagacctagggtcttacttaagaccctcatttttaagtggatcccacaccactt 35615632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 48457937 - 48457997
Alignment:
Q  246 aaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    |||||||||||||||||||||||||||||| ||  ||||||| ||||||||||||||||||    
T  48457937 aaatgtaaatgataaagagttattggtgggtcccatttagaccttttgttagagggtctct 48457997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 377026 - 377086
Alignment:
Q  171 gtctcttaagatccagggtctcacttaagaccc-cattcttaagtggacctcacaccactt 230  Q
    ||||||||||| ||| ||||||||||||||| | |||||||||||||||||||||||||||    
T  377026 gtctcttaagacccaaggtctcacttaagactctcattcttaagtggacctcacaccactt 377086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 24744520 - 24744453
Alignment:
Q  238 tattgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctc 305  Q
    |||||||| |||||||||||| |||||||| |||||||| |  ||||||| |||||||||||||||||    
T  24744520 tattgttggaatgtaaatgatgaagagttagtggtgggatcgatttagaccttttgttagagggtctc 24744453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 7885974 - 7886039
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    |||||||||| ||||||||||||||||||||||| ||||  |||| |||||||||||||| ||||||    
T  7885974 ttgttgaaatataaatgataaagagttattggtgagacc-atttaaacattttgttagagagtctct 7886039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 53143559 - 53143593
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgg 274  Q
    |||||||||||||||||||||||||||||||||||    
T  53143559 ttgttgaaatgtaaatgataaagagttattggtgg 53143593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 48457848 - 48457908
Alignment:
Q  171 gtctcttaagatccagggtctcacttaagacc-ccattcttaagtggacctcacaccactt 230  Q
    ||||||||||| || |||||||||||||||||  |||||||||||||| ||||||| ||||    
T  48457848 gtctcttaagacccggggtctcacttaagaccttcattcttaagtggatctcacacaactt 48457908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 7885885 - 7885943
Alignment:
Q  173 ctcttaagatccagggtctcacttaagacc-ccattcttaagtggacctcacaccactt 230  Q
    |||||||||  ||||||||||||||||||| ||||||||||||||| | ||||| ||||    
T  7885885 ctcttaagactcagggtctcacttaagacctccattcttaagtggatcccacacaactt 7885943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 45707654 - 45707720
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    ||||||||||||||||||||||||||| || |||| | |  |||| ||| ||||||||||| |||||    
T  45707654 ttgttgaaatgtaaatgataaagagttgtttgtggaaaccatttaaacaatttgttagaggatctct 45707720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 31720347 - 31720290
Alignment:
Q  174 tcttaagatccagggtctcacttaagacccc-attcttaagtggacctcacaccactt 230  Q
    ||||||||  |||||||| |||||||||||| | ||||||||||||| ||||||||||    
T  31720347 tcttaagactcagggtctaacttaagacccccaatcttaagtggaccccacaccactt 31720290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 45707578 - 45707623
Alignment:
Q  185 agggtctcacttaagaccccattcttaagtggacctcacaccactt 230  Q
    |||| ||||||||||||| |||| ||||||||| ||||||||||||    
T  45707578 agggcctcacttaagacctcatttttaagtggatctcacaccactt 45707623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 17378748 - 17378688
Alignment:
Q  171 gtctcttaagatccagggtctcacttaagacc-ccattcttaagtggacctcacaccactt 230  Q
    ||||||||||| ||| | |||||||||||||| |||||||||||| |||| |||| |||||    
T  17378748 gtctcttaagacccatgatctcacttaagacctccattcttaagtagaccccacatcactt 17378688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 27974594 - 27974530
Alignment:
Q  242 gttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    ||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| || ||||||    
T  27974594 gttgaaaagtaaatgataaagagttattggttggacctatttagacattttgttaaagagtctct 27974530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 28061123 - 28061059
Alignment:
Q  242 gttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    ||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| || ||||||    
T  28061123 gttgaaaagtaaatgataaagagttattggttggacctatttagacattttgttaaagagtctct 28061059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 39445786 - 39445840
Alignment:
Q  176 ttaagatccagggtctcacttaagaccccattcttaagtggacctcacaccactt 230  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||    
T  39445786 ttaagatccggggtctcacttaagaccccattcttaagtggaccccacacaactt 39445840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 45154324 - 45154391
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctctg 307  Q
    |||||||||||||||| |||||||||||||||||||| |  |||| ||||||| ||| ||||||||||    
T  45154324 ttgttgaaatgtaaataataaagagttattggtgggatccatttaaacattttattaaagggtctctg 45154391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 27974523 - 27974462
Alignment:
Q  245 gaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    |||||||||||||||||||||||||||| ||||   |||||||||||||||| || ||||||    
T  27974523 gaaatgtaaatgataaagagttattggttggactcatttagacattttgttaaagagtctct 27974462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 28061052 - 28060991
Alignment:
Q  245 gaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    |||||||||||||||||||||||||||| ||||   |||||||||||||||| || ||||||    
T  28061052 gaaatgtaaatgataaagagttattggttggactcatttagacattttgttaaagagtctct 28060991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 11512116 - 11512056
Alignment:
Q  171 gtctcttaagatccagggtctcacttaaga-ccccattcttaagtggacctcacaccactt 230  Q
    ||||||||||| ||||||||| |||||||| ||||| ||||||||||||| ||||||||||    
T  11512116 gtctcttaagacccagggtctaacttaagacccccaatcttaagtggaccccacaccactt 11512056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 300
Target Start/End: Original strand, 18379873 - 18379933
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagg 300  Q
    |||||||||||| |||||||||||||||||||||| || | ||| |||||||| |||||||    
T  18379873 ttgttgaaatgtgaatgataaagagttattggtggaacgtattttgacattttattagagg 18379933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 39445871 - 39445937
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    |||||||||||||||| ||||||||||||||||||  ||  |||| || ||||||| ||||||||||    
T  39445871 ttgttgaaatgtaaataataaagagttattggtggatcccatttaaaccttttgttggagggtctct 39445937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 4633951 - 4633997
Alignment:
Q  252 aaatgataaagagttattggtgggacctgtttagacattttgttaga 298  Q
    ||||||||||||||||||||||||| |  |||||||||||| |||||    
T  4633951 aaatgataaagagttattggtgggatccatttagacattttattaga 4633997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 30471755 - 30471822
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctctg 307  Q
    ||||| |||||||||||||||||||||||||||||| ||  ||||||| ||||||||||| |||||||    
T  30471755 ttgtttaaatgtaaatgataaagagttattggtgggtcccatttagaccttttgttagagcgtctctg 30471822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 4942520 - 4942455
Alignment:
Q  241 tgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    ||||||||||||||||||||||||||||||||||   |  ||||||| |||||||| |||||||||    
T  4942520 tgttgaaatgtaaatgataaagagttattggtggattccatttagaccttttgttaaagggtctct 4942455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 33494925 - 33494864
Alignment:
Q  169 gagtctcttaagatccagggtctcacttaagaccccattcttaagtggacctcacaccactt 230  Q
    ||||||||||||| || | ||||||||||||||||||||||||||| || ||||||| ||||    
T  33494925 gagtctcttaagacccggagtctcacttaagaccccattcttaagtagatctcacacaactt 33494864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 36974239 - 36974175
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtct 304  Q
    ||||||||||||||||||||||||||||||||||| |||  || | || |||||||||| |||||    
T  36974239 ttgttgaaatgtaaatgataaagagttattggtggaacccattaaaaccttttgttagaaggtct 36974175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 38037388 - 38037441
Alignment:
Q  246 aaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagag 299  Q
    ||||||||||||||||||||||||||||| |||  |||| || |||||||||||    
T  38037388 aaatgtaaatgataaagagttattggtggaacccatttaaactttttgttagag 38037441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 39955217 - 39955160
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttag 297  Q
    ||||||||||||||||| |||| ||||||||||| ||||  |||| ||||||||||||    
T  39955217 ttgttgaaatgtaaatggtaaatagttattggtgagacccatttaaacattttgttag 39955160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 5367720 - 5367755
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtggg 275  Q
    ||||||||||||||||||||||||||||||| ||||    
T  5367720 ttgttgaaatgtaaatgataaagagttattgatggg 5367755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 4942614 - 4942552
Alignment:
Q  169 gagtctcttaagatccagggtctcacttaagaccc-cattcttaagtggacctcacaccactt 230  Q
    |||||| |||| | |||| |||||||||||||||| |||||||||||||||| ||||| ||||    
T  4942614 gagtcttttaatacccagagtctcacttaagaccctcattcttaagtggaccccacacaactt 4942552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 13417457 - 13417395
Alignment:
Q  169 gagtctcttaagatccagggtctcacttaaga-ccccattcttaagtggacctcacaccactt 230  Q
    |||||||||||||  |||||||| |||||||| ||||| | ||||||||||| ||||||||||    
T  13417457 gagtctcttaagactcagggtctaacttaagacccccaatgttaagtggaccccacaccactt 13417395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 36974330 - 36974284
Alignment:
Q  169 gagtctcttaagatccagggtctcacttaagaccccattcttaagtg 215  Q
    ||||||| ||||||||   ||||||||||||||||||||||||||||    
T  36974330 gagtctcctaagatccgatgtctcacttaagaccccattcttaagtg 36974284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 15558603 - 15558668
Alignment:
Q  241 tgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    |||| |||| ||||||||||||||||||||||| | |   |||| ||||||||||| |||||||||    
T  15558603 tgttaaaatataaatgataaagagttattggtgagtctcatttaaacattttgttaaagggtctct 15558668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 33494833 - 33494800
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtg 273  Q
    |||||||||||||||| |||||||||||||||||    
T  33494833 ttgttgaaatgtaaataataaagagttattggtg 33494800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 1421953 - 1421895
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttaga 298  Q
    ||||||||||||||||||||||||||||||||| |||||  |||||||||| |||||||    
T  1421953 ttgttgaaatgtaaatgataaagagttattggtaggacccatttagacattgtgttaga 1421895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 10287958 - 10288017
Alignment:
Q  171 gtctcttaagatccagggtctcacttaagaccccattcttaagtggacctcacaccactt 230  Q
    ||||||||||||||||| ||| ||||||||||||| |||||| |||||| ||||||||||    
T  10287958 gtctcttaagatccaggatcttacttaagaccccaatcttaaatggaccccacaccactt 10288017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 9415557 - 9415517
Alignment:
Q  238 tattgttgaaatgtaaatgataaagagttattggtgggacc 278  Q
    ||||||||||||||||||||| |||||||| ||||| ||||    
T  9415557 tattgttgaaatgtaaatgatgaagagttagtggtgagacc 9415517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 24848939 - 24848987
Alignment:
Q  257 ataaagagttattggtgggacctgtttagacattttgttagagggtctc 305  Q
    ||||| ||||||||||||||||  |||| || |||||||||||||||||    
T  24848939 ataaatagttattggtgggacccttttaaaccttttgttagagggtctc 24848987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 11703276 - 11703210
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    ||||| |||||||||||||||||||||||||||||| |   ||||||| ||||||||||||||||||    
T  11703276 ttgttaaaatgtaaatgataaagagttattggtgggtctcatttagaccttttgttagagggtctct 11703210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 24141400 - 24141457
Alignment:
Q  243 ttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagg 300  Q
    |||||||||||||||||||||||||||| ||||  || ||||||||||||||||||||    
T  24141400 ttgaaatgtaaatgataaagagttattgatgggttctatttagacattttgttagagg 24141457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 31632426 - 31632376
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacatt 290  Q
    |||||||||||||||||||||||||||||||||| || |  ||||||||||    
T  31632426 ttgttgaaatgtaaatgataaagagttattggtgagaaccatttagacatt 31632376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 30250341 - 30250401
Alignment:
Q  246 aaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagagggtctct 306  Q
    ||||||||||||||||||||||||| || |||   ||||||| |||| ||||||| |||||    
T  30250341 aaatgtaaatgataaagagttattgatgagacacatttagactttttcttagaggatctct 30250401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 31632514 - 31632470
Alignment:
Q  174 tcttaagatccagggtctcacttaaga-ccccattcttaagtgga 217  Q
    |||||||| |||||||| ||||||||| |||||||||||||||||    
T  31632514 tcttaagacccagggtcacacttaagacccccattcttaagtgga 31632470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 4922 - 4863
Alignment:
Q  240 ttgttgaaatgtaaatgataaagagttattggtgggacctgtttagacattttgttagag 299  Q
    |||||||| ||||||||||||||||||||||||||||||  |||  ||||||||||||||    
T  4922 ttgttgaattgtaaatgataaagagttattggtgggaccaattttaacattttgttagag 4863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 55948 - 55905
Alignment:
Q  183 ccagggtctcacttaagaccc-cattcttaagtggacctcacac 225  Q
    ||||||||||||||||||||| |||||||||||||| |||||||    
T  55948 ccagggtctcacttaagaccctcattcttaagtggaactcacac 55905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 283 - 315
Alignment:
Q  243 ttgaaatgtaaatgataaagagttattggtggg 275  Q
    |||||||||||||||||||||||||||| ||||    
T  283 ttgaaatgtaaatgataaagagttattgttggg 315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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