View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4975-Insertion-2 (Length: 982)
Name: NF4975-Insertion-2
Description: NF4975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4975-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 857; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 857; E-Value: 0
Query Start/End: Original strand, 5 - 940
Target Start/End: Original strand, 36322781 - 36323718
Alignment:
| Q |
5 |
acatgttgtcccaaaattgccagcgaaaatctattttccaatcaaatttcatgcttcccacaaatcaagggaggtggtggggcataatttagggagatat |
104 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36322781 |
acatgttgtcccaaaattgccagcgaaaatctatttttcaatcaaatttcatgcttcccacaaatcaagggaggtggtggggcataatttagggagatat |
36322880 |
T |
|
| Q |
105 |
catgattattcggtgcatgttcacttgtgaaattattgggacaatattt-gtcgtgatacatagcaatttccttatattatatagagcatgtgacaaacg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36322881 |
catgattattcggtgcatgttcacttgtgaaactattgggacaatattttgtcgtgatacatagcaatttccttatattatatagagcatgtgacaaatg |
36322980 |
T |
|
| Q |
204 |
tttgacaccattatattggtggtggttgatgatggtcgcccggcggcggagctcccattaggatcgatggttgagctcattttaagcttaggagaaggtt |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36322981 |
tttgacaccattatattggtggtggttgatgatggtcgcccggcagcggagctcccattaggatcgatggttgagctcattttaagcttaggagaaggtt |
36323080 |
T |
|
| Q |
304 |
gacctccccnnnnnnnggacccttgggagaagcaacatggacaaacattgttaacaaaaaacaaaactcatgtgtgtatgtgtagctaaagattaatggc |
403 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36323081 |
gacctccccaaaaaaaggacccttgggagaagcaacatggacaaacattgttaacaaaaaacaaaattcatgtgtgtatgtgtagctaaagattaatggc |
36323180 |
T |
|
| Q |
404 |
aaacctcggttaaagtatgcatatcattttcataatttgttatacgaatatgtgtaaattttttctaaagatcgagcgagccattgtagttaactaatga |
503 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36323181 |
aaacctcggtttaaacatgcatatcattttcataatttgtaatacgaatatgtgtaaattttttctaaagatcgagcgagccattgtagttaactaatga |
36323280 |
T |
|
| Q |
504 |
ttctgtaaatgcatatgaataaaaattttcctcaaatacctgaccgcaaaatattttaaattctttagcctatttaaaacttatcaattacaagtaatgt |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36323281 |
ttctgtaaatgcatatgaataaaaattttcctcaaatacctgaccgcaaaatattttaaattctttagcctatttaaaacttatcaattacaagtaatgt |
36323380 |
T |
|
| Q |
604 |
aatgaagtctatatattgtgaattatgttgcagggactggcgttactcacggtacaagcacattaccctaacctaaaaccagccatatgcaacctctatg |
703 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36323381 |
aatgaagtctatatattgtgaattatgttgcagggactggcgttactcacagtacaagcacattaccctaacctaaaaccagccatatgcaacctctatg |
36323480 |
T |
|
| Q |
704 |
acaaaaatgcagtgtgtgaaaaaattagtggcaaccatgaagcttttctcttgattggtctctacttgttggcctttggtagtgcaggcttgaaagcttc |
803 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36323481 |
acaaaaatgcagtgtgtgaaaaaattagtggcaaccatgaagcttttctcttgattggtctctacttgttggcctttggtagtgcaggcttgaaagcttc |
36323580 |
T |
|
| Q |
804 |
tctgccagcacatggtgctgaccagtttgatgaaaaagatcccaaagaagcaagacaaatgtccagcttctttaatggtctcttgcttgc-atttgcgtt |
902 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36323581 |
tctgccagcacatggtgctgaccagtttgatgaaaaagatcccaaagaaacaagacaaatgtccagcttctttaatggtctcttgcttgcaatttgcgtt |
36323680 |
T |
|
| Q |
903 |
ggtggttctgtcagcttaacttttaatgtatggataca |
940 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
36323681 |
ggtggttctgtcagcttaacttttaatgtatggataca |
36323718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 617 - 940
Target Start/End: Original strand, 36330240 - 36330564
Alignment:
| Q |
617 |
tattgtgaattatgttgcagggactggcgttactcacggtacaagcacattaccctaacctaaaaccagccatatgcaacctctatgacaaaaatgcagt |
716 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||| |
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|
| T |
36330240 |
tattgtgaactatgctgcagggactggcgttactcacagtacaagcacattaccctaatctgaaaccagccatatgcaacttacttgacaaaaatgcagt |
36330339 |
T |
|
| Q |
717 |
gtgtgaaaaaattagtggcaaccatgaagcttttctcttgattggtctctacttgttggcctttggtagtgcaggcttgaaagcttctctgccagcacat |
816 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330340 |
gtgtgaaaaaattaatggcaaccatgaagcttttctcttcattagtctatacttgttggcctttggtagtgcaggcttgaaagcttctctgccagcacat |
36330439 |
T |
|
| Q |
817 |
ggtgctgaccagtttgatgaaaaagatcccaaagaagcaagacaaatgtccagcttctttaatggtctcttgcttgc-atttgcgttggtggttctgtca |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||||| |
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| T |
36330440 |
ggtgctgaccagtttgatgaaaaagatcccaaagaaacaagacaaatgtctagcttctttaatgctctcttgcttgctgtttgcattggtggttctgtca |
36330539 |
T |
|
| Q |
916 |
gcttaacttttaatgtatggataca |
940 |
Q |
| |
|
||||||| ||||||||||||||||| |
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| T |
36330540 |
gcttaacatttaatgtatggataca |
36330564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 705 - 940
Target Start/End: Original strand, 37919830 - 37920066
Alignment:
| Q |
705 |
caaaaatgcagtgtgtgaaaaaattagtggcaaccatgaagcttttctcttgattggtctctacttgttggcctttggtagtgcaggcttgaaagcttct |
804 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
37919830 |
caaaaatgcagtgcgtgaaaaaattagtggcaaccatgaagcttttctcttcattagtctatacgtgttggcctttggtagtgcaggcttgaaagcttct |
37919929 |
T |
|
| Q |
805 |
ctgccagcacatggtgctgaccagtttgatgaaaaagatcccaaagaagcaagacaaatgtccagcttctttaatggtctcttgcttg-catttgcgttg |
903 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| ||||||| |||||| |||| ||||| ||| |
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| T |
37919930 |
ctgccagcacatggtgctgaccagtttgatgaaaaagatctcaaagaaacaagacaaatgtctagcttatttaatgttctcttacttgttgtttgcattg |
37920029 |
T |
|
| Q |
904 |
gtggttctgtcagcttaacttttaatgtatggataca |
940 |
Q |
| |
|
||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
37920030 |
atggttctgtcaacttaacatttaatgtatagataca |
37920066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 742 - 940
Target Start/End: Original strand, 5458785 - 5458984
Alignment:
| Q |
742 |
gaagcttttctcttgattggtctctacttgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaag |
841 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||||||| || |||||||| |||||| | ||||| |||||||||| ||||| ||||||||| || |
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|
| T |
5458785 |
gaagctattctcttcattggtctatacttgttggccttcggcagtgcaggaaccaaagctgcattgccatcacatggtgcagaccaatttgatgaatcag |
5458884 |
T |
|
| Q |
842 |
atcccaaagaagcaagacaaatgtccagcttctttaatggtctcttgcttgc-atttgcgttggtggttctgtcagcttaacttttaatgtatggataca |
940 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||| |||||||||||| ||||| | |||||| | |||||||||||||| | |||||||||||| |
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|
| T |
5458885 |
atcccaaagaagaaaagaaaatgtccacattctttaatgttctcttgcttgctgtttgcatgggtggtgcagtcagcttaactttcattgtatggataca |
5458984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 17438909 - 17438840
Alignment:
| Q |
26 |
agcgaaaatctattttccaatcaaatttcatgcttcccacaaatcaagggaggtggtggggcataattta |
95 |
Q |
| |
|
||||| |||| ||| |||||| ||||||| | || |||||||||||||||||||||||||||||||||| |
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|
| T |
17438909 |
agcgataatcaattgtccaattaaatttctttctggccacaaatcaagggaggtggtggggcataattta |
17438840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 11168178 - 11168124
Alignment:
| Q |
41 |
tccaatcaaatttcatgcttcccacaaatcaagggaggtggtggggcataattta |
95 |
Q |
| |
|
|||||||||||||| | || ||||||||||||||||||||||||||||| |||| |
|
|
| T |
11168178 |
tccaatcaaatttctttctgaccacaaatcaagggaggtggtggggcatatttta |
11168124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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