View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4975-Insertion-4 (Length: 153)
Name: NF4975-Insertion-4
Description: NF4975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4975-Insertion-4 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-70
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 8341708 - 8341564
Alignment:
| Q |
9 |
acttggctgtggagaccatgctaaaattggcgaccgtycctgtaagcaacaaagggcatgaataagatgcaatattcttaataatgaattaatcatgtca |
108 |
Q |
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| T |
8341708 |
acttggctgtggagaccatgctaaaattggcgaccgttcctgtaagcaacaaagggcatgaataagatgcaatattcttaataatgaattaatcatgtcg |
8341609 |
T |
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| Q |
109 |
tatattcrgtagcgtagtgttcaataagatgcaacttctaattta |
153 |
Q |
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| T |
8341608 |
tatattcagtagcgtagtgttcaataagatgcaacttctgattta |
8341564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-33
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 8366360 - 8366506
Alignment:
| Q |
8 |
cacttggctgtggagaccatgctaaaattggcgaccgtycctgtaagcaacaaaggg-catgaataagatgcaatattcttaataatgaattaatcatgt |
106 |
Q |
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| T |
8366360 |
cacttggctgtggagcccatcctaaaattggtgactgttcctgtaggcaacaaaaggtcttgaataagatgcaatattcataggaatgaattaatcatgt |
8366459 |
T |
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| Q |
107 |
catatattcrgtagcgtagtgttcaataagatgcaacttctaattta |
153 |
Q |
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| T |
8366460 |
tatttattcagtggtgtactgttcaataagatgctacttctaattta |
8366506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-22
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 8382364 - 8382505
Alignment:
| Q |
11 |
ttggctgtggagaccatgctaaaattggcgaccgtycctgtaagcaacaaaggg-catgaataagatgcaatattcttaataatgaattaatcatgtcat |
109 |
Q |
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| T |
8382364 |
ttggctgtggagcccatcctaaaattggtgactgtttctgcaggcaagaaaaggacttgaataagatgcaatattcat--taatgaattaatcatgttat |
8382461 |
T |
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| Q |
110 |
atattcrgtagcgtagtgttcaataagatgcaacttctaattta |
153 |
Q |
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| T |
8382462 |
atattaagtggtgtactgttcaataagatgctacttctaattta |
8382505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 17478685 - 17478544
Alignment:
| Q |
10 |
cttggctgtggagaccatgctaaaattggcgaccgtycctgtaagcaacaaagggcatgaataagatgcaatattcttaataatgaattaatcatgtcat |
109 |
Q |
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| T |
17478685 |
cttgtctgtggagcccatcctaaaattggtaattgttgctgtaggcaacaaaggacttgaataagatgcaatattcatagtaatgaattaatcatgttat |
17478586 |
T |
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| Q |
110 |
atattcrgtagcgtagtgttcaataagatgcaacttctaatt |
151 |
Q |
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| T |
17478585 |
atattaagtggtgtattgtgcaataagataaaacttctaatt |
17478544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 4442325 - 4442255
Alignment:
| Q |
44 |
gtycctgtaagcaacaaagggcatgaataagatgcaatattcttaataatgaattaatcatgtcatatatt |
114 |
Q |
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| T |
4442325 |
gttcctgtaggcaacaaaagacttgaataagatgcaatgttcattgtaatgaattaatcatgttatatatt |
4442255 |
T |
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