View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4975_high_6 (Length: 382)
Name: NF4975_high_6
Description: NF4975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4975_high_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 41365010 - 41365390
Alignment:
| Q |
1 |
aatcaaacaatggactcaaatgactctaaaattacatttgatgatgaatcatccctaagcttcacaggtacgcaaaagcaattgtcactccacgttcttc |
100 |
Q |
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| T |
41365010 |
aatcaaacaatgaactcaaatgactctaaaattacatttgatgatgaatcatccctaagcttcacaggtacgcaaaagcaattgtcactccacgttcttc |
41365109 |
T |
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| Q |
101 |
atgcaactcacaatctcgnnnnnnnnnnnnnnnnnnncaaaactaatgcgagtaattcagatccgcctggatcaagttaaagcactaatcatcaaatcaa |
200 |
Q |
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| T |
41365110 |
atgcaactcacaatctcgttttcttttttcattttt-caaaactaatgcgggcaattcagatccgcctggatcaagttaaagcactaatcatcaaatcaa |
41365208 |
T |
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| Q |
201 |
ttgtacccggattctttgatttcttcatcaagaatcttctcatcaaacacgattcttttgcgacacaatggctttcgtttcatgggtgtctttgttatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41365209 |
ttgtacccggattctttgatttcttcatcaagaatcttctcatcaaacacgattcttttgcgacacaatggctttcgtttcatgggtgtctttgttatta |
41365308 |
T |
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| Q |
301 |
tggttttcttcttgcagggtgcaccaggacattcaagaatcggtgggattttgtgatctgaagatgtgggagtcttgaaccc |
382 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41365309 |
tggttttcttcttgcagggtgcaccaggacattcaaaaatcggtgggattttgtgatctgaagatgtgggagtcttgaaccc |
41365390 |
T |
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