View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4975_low_1 (Length: 501)

Name: NF4975_low_1
Description: NF4975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4975_low_1
NF4975_low_1
[»] chr8 (3 HSPs)
chr8 (20-322)||(3586782-3587084)
chr8 (392-491)||(3587156-3587255)
chr8 (133-179)||(3574501-3574547)
[»] chr7 (2 HSPs)
chr7 (385-436)||(28195375-28195426)
chr7 (111-165)||(21979083-21979138)
[»] chr1 (1 HSPs)
chr1 (401-443)||(35812111-35812153)
[»] chr2 (1 HSPs)
chr2 (388-447)||(2703106-2703166)
[»] chr3 (2 HSPs)
chr3 (401-443)||(28145037-28145079)
chr3 (121-164)||(28080376-28080420)
[»] chr6 (1 HSPs)
chr6 (20-60)||(10506505-10506545)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 3586782 - 3587084
Alignment:
Q  20 ttgttccagcaaagtttcactacatgtagttgaagtttcaagttcaaatttcaagtgttatcttctggagcgtgaagatggaggttatatgcggtacttt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3586782 ttgttccagcaaagtttcactacatgtagttgaagtttcaagttcaaatttcaagtgttatcttctggagcgtgaagatggaggttatatacggtacttt 3586881  T
Q  120 tggtactccatttttattcattttctattgtgagtgaaaattgtgggttctcttgtatatggtcaccgaaagggccggcaccactaataaggtcagtact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3586882 tggtactccatttttattcattttctattgtgagtgaaaattgtgggttctcttgtaaatggtcaccgaaagggccggcaccactaataaggtcagtact 3586981  T
Q  220 tttcgagctgctgcccatgatgctgctaatgtgcttgaacttcctcctgatgtggttgacatagtttcacgtttggcccatacagtgttacacgagcata 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  3586982 tttcgagctgctgcccatgatgctgctaatgtgcttgaacttcctcctgatgtggttgacatagtttcacgtttggcccgtatagtgttacacgagcata 3587081  T
Q  320 tga 322  Q
    |||    
T  3587082 tga 3587084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 392 - 491
Target Start/End: Original strand, 3587156 - 3587255
Alignment:
Q  392 aaaatttagctctcatgttatattatataacaaaattcatgatttcattgacatatttatatattaannnnnnnaaaattgttgtattctcgtacctttg 491  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||    
T  3587156 aaaatttagctctcatgttatattatataacaaaattcatgatttcattgacgtatttatatattaatttttataaaattgttgtattctcgtacctttg 3587255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 3574501 - 3574547
Alignment:
Q  133 ttattcattttctattgtgagtgaaaattgtgggttctcttgtatat 179  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  3574501 ttattcattttttattgtgagtgaaaatcgtgggttctcttgtatat 3574547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 436
Target Start/End: Original strand, 28195375 - 28195426
Alignment:
Q  385 aagttgaaaaatttagctctcatgttatattatataacaaaattcatgattt 436  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  28195375 aagttgaagaatttaggtctcatgttatattatataacaaaactcatgattt 28195426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 21979138 - 21979083
Alignment:
Q  111 cggtacttttggtactccatttttattcatt-ttctattgtgagtgaaaattgtgg 165  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||| ||| |||||    
T  21979138 cggtacttttggtactccatttttgctcattattctattgtgagtggaaaatgtgg 21979083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 443
Target Start/End: Complemental strand, 35812153 - 35812111
Alignment:
Q  401 ctctcatgttatattatataacaaaattcatgatttcattgac 443  Q
    |||||||||||||||||||||||||| ||||||||| ||||||    
T  35812153 ctctcatgttatattatataacaaaactcatgattttattgac 35812111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 447
Target Start/End: Complemental strand, 2703166 - 2703106
Alignment:
Q  388 ttgaaaaatttagct-ctcatgttatattatataacaaaattcatgatttcattgacatat 447  Q
    ||||| ||||||||| ||||||||| |||||||||||||| || |||||| ||||||||||    
T  2703166 ttgaataatttagcttctcatgttacattatataacaaaagtcgtgattttattgacatat 2703106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 443
Target Start/End: Original strand, 28145037 - 28145079
Alignment:
Q  401 ctctcatgttatattatataacaaaattcatgatttcattgac 443  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||    
T  28145037 ctctcatgttatattatatagcaaaactcatgattttattgac 28145079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 28080376 - 28080420
Alignment:
Q  121 ggtactccatttttattcatt-ttctattgtgagtgaaaattgtg 164  Q
    |||||| ||||||| |||||| |||||||||||||||||||||||    
T  28080376 ggtacttcatttttgttcattattctattgtgagtgaaaattgtg 28080420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 10506545 - 10506505
Alignment:
Q  20 ttgttccagcaaagtttcactacatgtagttgaagtttcaa 60  Q
    |||||| |||||||||||||||||| | |||||||||||||    
T  10506545 ttgttcaagcaaagtttcactacatattgttgaagtttcaa 10506505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University