View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4975_low_10 (Length: 231)
Name: NF4975_low_10
Description: NF4975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4975_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 38549857 - 38550060
Alignment:
| Q |
14 |
tgagatgaaccgagggacagaaaagagcaattgtgtgataaaaagaacttaaaaaacttcaaatatcaacatgtgtgtatgtatgtatgataaaagaact |
113 |
Q |
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| T |
38549857 |
tgagatcaaccgagggacagaaaagagcaattgtgtgataaaaagaacttaaaaaacttcaaatatcaacatgtgtgtatgtatgtatgataaaagaact |
38549956 |
T |
|
| Q |
114 |
tcaaagttcaaataaacatgt----nnnnnnnttgtgtgataaaaaagagcaagatgctcatctcaccaacaaatttgctctccagtgcccaagaagacc |
209 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38549957 |
tcaaagttcaaataaacatgtaaaaaaacaaattgtgtgataaaaaagagcaagatgctcgtctcaccaacaaatttgctctccagtgcccaagaagacc |
38550056 |
T |
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| Q |
210 |
ttca |
213 |
Q |
| |
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|||| |
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| T |
38550057 |
ttca |
38550060 |
T |
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