View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4975_low_2 (Length: 490)
Name: NF4975_low_2
Description: NF4975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4975_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 114 - 473
Target Start/End: Original strand, 27221971 - 27222331
Alignment:
| Q |
114 |
caagaatatgacaaaa-agaggaaaaatgcatagtcttcaagtgagtaccaatataaggatgcaaaatattctagaattgagaaattggaaagatagaag |
212 |
Q |
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| T |
27221971 |
caagaatatgacaaaaaagaggaaaaatgcagagtcttcaagtgagtaccaatataaggatgcaaaatattctagaattgagaaattggaaagatagaag |
27222070 |
T |
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| Q |
213 |
catcaaaagttaaggctgacaggtataaatcagaagttgatagtgcagtaataaatccttattcaatagaagcatgcatggaattgctcgactctatgga |
312 |
Q |
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| T |
27222071 |
catcaaaagttaaggctgacaggtataaatcagaagttgatagtgcagtaacaaatccttattcaatagaagcatgcatggaattgctcgactctatgga |
27222170 |
T |
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| Q |
313 |
agacgttcctagtaagttttacaataatgcattgatgaaatttaaagatgaggactggagacttttgtttattaagatgccttcctttaggagaaaggat |
412 |
Q |
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| T |
27222171 |
agacgttcctagtaagttttacaataatgcattggtgaaatttaaaaatgaggactggagacttatgtttattaagatgccttcctctaggagaaaggat |
27222270 |
T |
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| Q |
413 |
tgacttgcatctcttgagtagcattcagtgaatagttcaaatacttttacaacttggttgg |
473 |
Q |
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| T |
27222271 |
tgacttgcatctcttgagtagcattcagtgaatagttcaaatacttttacaccttgattgg |
27222331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 219 - 387
Target Start/End: Original strand, 27226943 - 27227111
Alignment:
| Q |
219 |
aagttaaggctgacaggtataaatcagaagttgatagtgcagtaataaatccttattcaatagaagcatgcatggaattgctcgactctatggaagacgt |
318 |
Q |
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| T |
27226943 |
aagttaaggctgacaggtataaatcagaagctgatagtgcagtaacaaatccttattcaatagaagcatgcatggaattgcttgactccatggaagacgt |
27227042 |
T |
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| Q |
319 |
tcctagtaagttttacaataatgcattgatgaaatttaaagatgaggactggagacttttgtttattaa |
387 |
Q |
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| T |
27227043 |
tccaagtaagttttacaataatgcgttggtgaagtttaaagataaggattggagacttatgtttattaa |
27227111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 27221911 - 27221971
Alignment:
| Q |
1 |
cttcagctcaaggtccacgaatctttaaagaggagagagtaacagaaggagcccatcttac |
61 |
Q |
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| T |
27221911 |
cttcagctcaaggtccacgaatctttaaagaggagagagtaacagaaggagcccatcttac |
27221971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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