View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4975_low_4 (Length: 477)
Name: NF4975_low_4
Description: NF4975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4975_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Original strand, 26461222 - 26461664
Alignment:
| Q |
18 |
ggcttttcattttgcgttattattttgaaactgtaattgcggataatatataaattttaatttgttgttgattatctattcttctgcgttgcagggcttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
26461222 |
ggcttttcattttgcgttattattttgaaactgtaattgcagataatatattaatttt-----gttgttgattatctattcttctgagttgcagggcttc |
26461316 |
T |
|
| Q |
118 |
atacggaatgagccttttgatcctaagacctggatcattcctggagttaaatcaagatgttttaaattagaagagacagttttcaaggggacaaaaatat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26461317 |
atacggaatgagccttttgatcctaagacctggatcattcctggagttaaatcaagatgttttaaattagaagagacagttttcaaggggacaaaaatat |
26461416 |
T |
|
| Q |
218 |
atactcgcggaaatagaaaattgaaacggaaaattgccgctgatgttgttgaagcactaattggtgccttccttagcactggtggtgagatggctgcatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26461417 |
atactcgcggaaatagaaaattgaaacggaaaattgccgctgatgttgttgaagcactaattggtgccttccttagcactggtggtgagatggctgcatt |
26461516 |
T |
|
| Q |
318 |
gctgtttatggattgggttggcatcaaagtgaatttcaatattacaccctatgagaggcaattcgatgcttgtccagacaatctaattaatgtcagcttt |
417 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26461517 |
gctgtttttggattgggttggtatcaaagtgaatttcaatattacaccctatgagaggcaattcgatgcttgtccagacaatctaatcaatgtcagcttt |
26461616 |
T |
|
| Q |
418 |
ctagaatccctcttgaagcactcgtttagggaccgttcgctgttagta |
465 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
26461617 |
ctagaatccctcttgaagcactcgtttagggaccgttcactgttagta |
26461664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Original strand, 29680005 - 29680447
Alignment:
| Q |
18 |
ggcttttcattttgcgttattattttgaaactgtaattgcggataatatataaattttaatttgttgttgattatctattcttctgcgttgcagggcttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
29680005 |
ggcttttcattttgcgttattattttgaaactgtaattgcagataatatattaatttt-----gttgttgattatctattcttctgagttgcagggcttc |
29680099 |
T |
|
| Q |
118 |
atacggaatgagccttttgatcctaagacctggatcattcctggagttaaatcaagatgttttaaattagaagagacagttttcaaggggacaaaaatat |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29680100 |
atacggaatgagccttttgatccaaagacctggatcattcctggagttaaatcaagatgttttaaattagaagagacagttttcaaggggacaaaaatat |
29680199 |
T |
|
| Q |
218 |
atactcgcggaaatagaaaattgaaacggaaaattgccgctgatgttgttgaagcactaattggtgccttccttagcactggtggtgagatggctgcatt |
317 |
Q |
| |
|
||||||| || ||||||||||||||||||||| ||| |||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |
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|
| T |
29680200 |
atactcgagggaatagaaaattgaaacggaaagttgttgctgatgttgttgaagcactaattggggcattccttagcgctggtggtgagatggctgcatt |
29680299 |
T |
|
| Q |
318 |
gctgtttatggattgggttggcatcaaagtgaatttcaatattacaccctatgagaggcaattcgatgcttgtccagacaatctaattaatgtcagcttt |
417 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || || |||||||||||||||| |||||||||||| | |
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|
| T |
29680300 |
gttgtttatggattgggttggcatcaaagtgaatttgaatattacaccctatgagaggcaaatcaattcttgtccagacaatcttcttaatgtcagctat |
29680399 |
T |
|
| Q |
418 |
ctagaatccctcttgaagcactcgtttagggaccgttcgctgttagta |
465 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
29680400 |
ctagaatccctcttgaagtactcgtttagggaccgttccctgttagta |
29680447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 223 - 455
Target Start/End: Original strand, 33094908 - 33095141
Alignment:
| Q |
223 |
cgcggaaatagaaaattgaaacggaaaattgccgctgatgttgtt-gaagcactaattggtgccttccttagcactggtggtgagatggctgcattgctg |
321 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||| ||||||||| | ||||||||||||||||||||| || |
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|
| T |
33094908 |
cgcggaaatagaaaattgaaacggaaagttgctgctgatgttgtttgaagcactgattggtgcattccttagcgcaggtggtgagatggctgcattgttg |
33095007 |
T |
|
| Q |
322 |
tttatggattgggttggcatcaaagtgaatttcaatattacaccctatgagaggcaattcgatgcttgtccagacaatctaattaatgtcagctttctag |
421 |
Q |
| |
|
| |||||||||| |||| |||||||| ||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
33095008 |
tatatggattggattggtatcaaagttaatattaatattacaccctatgagaggcaattcaatgcttgtccagacaatctaattattgtcagctatctag |
33095107 |
T |
|
| Q |
422 |
aatccctcttgaagcactcgtttagggaccgttc |
455 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
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|
| T |
33095108 |
aatccctcttgaattactcgtttagggaccgttc |
33095141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 210 - 465
Target Start/End: Complemental strand, 33094905 - 33094670
Alignment:
| Q |
210 |
aaaaatatatactcgcggaaatagaaaattgaaacggaaaattgccgctgatgttgttgaagcactaattggtgccttccttagcactggtggtgagatg |
309 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||| || ||| |||||||||||||||||||| || ||||||||||||| |
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| T |
33094905 |
aaaaatatttagtcgcggaaatagaaaattgaaacggtaagttgttgctgatgttgttgaagcactgat------------------tggtggtgagatg |
33094824 |
T |
|
| Q |
310 |
gctgcattgctgtttatggattgggttggcatcaaagtgaatttcaatattacaccctatgagaggcaattcgatgc-ttgtccagacaatctaattaat |
408 |
Q |
| |
|
||||||||| ||||| ||||||| ||||| |||||||||||| | ||||||||| ||||||| ||||||| |||| ||||| ||| |||||| ||||| |
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|
| T |
33094823 |
gctgcattgttgtttctggattgagttggtatcaaagtgaatattaatattaca---tatgagatgcaattcaatgctttgtcgagataatctagttaat |
33094727 |
T |
|
| Q |
409 |
gtcagctttctagaatccctcttgaagcactcgtttagggaccgttcgctgttagta |
465 |
Q |
| |
|
||||||| || ||||||||| |||||| ||||||||||||||||||| ||||||||| |
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|
| T |
33094726 |
gtcagctatcaagaatcccttttgaagtactcgtttagggaccgttctctgttagta |
33094670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 87 - 465
Target Start/End: Complemental strand, 11489043 - 11488665
Alignment:
| Q |
87 |
gattatctattcttctgcgttgcagggcttcatacggaatgagccttttgatcctaagacctggatcattcctggagttaaatcaagatgttttaaatta |
186 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
11489043 |
gattttctattcttctgagttgcagggcttcatacggaatgacccttttgatccaaagacctggatcattcctggagttaaatcagaaagttttaaatta |
11488944 |
T |
|
| Q |
187 |
gaagagacagttttcaaggggacaaaaatatatactcgcggaaatagaaaattgaaacggaaaattgccgctgatgttgttgaagcactaattggtgcct |
286 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| |||||| |||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| | |
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|
| T |
11488943 |
gaagagacagttttcaatgggagaaaaatatatacccgcggagatagaaaattgaaacggaaagttgttgctgatgttgtcgaagcactaattggtgcat |
11488844 |
T |
|
| Q |
287 |
tccttagcactggtggtgagatggctgcattgctgtttatggattgggttggcatcaaagtgaatttcaatattacaccctatgagaggcaattcgatgc |
386 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| |||||||||||||| |||| |||||||| ||||| ||||||| ||||||||||||||||||| ||| |
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|
| T |
11488843 |
tccttagcgctggtggtgagatggctgcgttgttgtttatggattggattgggatcaaagtcaattttaatattataccctatgagaggcaattcattgc |
11488744 |
T |
|
| Q |
387 |
ttgtccagacaatctaattaatgtcagctttctagaatccctcttgaagcactcgtttagggaccgttcgctgttagta |
465 |
Q |
| |
|
|||||| ||||||||| |||||||||| |||||||||||||| |||||| | ||||| ||||| ||||| || |||||| |
|
|
| T |
11488743 |
ttgtcccgacaatctagttaatgtcagatttctagaatccctattgaagtattcgttcagggatcgttctctattagta |
11488665 |
T |
|
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