View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4975_low_5 (Length: 466)
Name: NF4975_low_5
Description: NF4975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4975_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 39866260 - 39866553
Alignment:
| Q |
17 |
caaaatacacgtcccagcagcagctacctttattggaagaataaagtactagtattagacaataactagtactattatagtcttaagtaagataagtatt |
116 |
Q |
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| T |
39866260 |
caaaatacacgtcccagcagcagctacctttattggaagaataaagtactagtattagacaataactagtactattatagtcttaagtaagataagtatt |
39866359 |
T |
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| Q |
117 |
cattaatagtctatccaatgatgtgctattaagtttctattatttgttagctatgatgtaatctgctaaatattattcttaatcaagtcttatttatata |
216 |
Q |
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| T |
39866360 |
cattaatagtctatccaatgatgtgctattaagtttctattatttgttagctatgatgtaatctgctaaatattattcttaatcaagtcttatttatata |
39866459 |
T |
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| Q |
217 |
cttctattggtgtatgtccaaagcctagactatatgatcagcattgctatgttcttatcaaatagagtcaattcagtttactcgttatgtaggg |
310 |
Q |
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| T |
39866460 |
cttctattggtgtatgtccaaagcctagactatatgatcagcattgctatgttcttatcaaatagagtcaattcagtttagtcgttatgtaggg |
39866553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 351 - 456
Target Start/End: Original strand, 39866596 - 39866701
Alignment:
| Q |
351 |
ggtctcaaaaactacaaatcttttaccatatcaattattttgtcaatcatcaaagtgatcttgaaataactacaacattctttactttaggttaattata |
450 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39866596 |
ggtctcaaaaactataaatcttttaccatatcaattattttgtcaatcattaaagtgatcttgaaataactacaacattctttactttaggttaattata |
39866695 |
T |
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| Q |
451 |
gtatta |
456 |
Q |
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|||||| |
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| T |
39866696 |
gtatta |
39866701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 39861888 - 39861962
Alignment:
| Q |
100 |
taagtaagataagtattcat----taatagtctatccaatgatgtgctattaagtttctattatttgttagctat |
170 |
Q |
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| T |
39861888 |
taagtaagataagtattcataatataatagtctatccaatgatgtgtgattaagtttctattatttgtttgctat |
39861962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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