View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4976-Insertion-1 (Length: 1042)

Name: NF4976-Insertion-1
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4976-Insertion-1
NF4976-Insertion-1
[»] chr4 (5 HSPs)
chr4 (473-1038)||(24894341-24894908)
chr4 (8-389)||(24893876-24894257)
chr4 (797-883)||(53711783-53711869)
chr4 (800-945)||(40197828-40197970)
chr4 (798-859)||(47533704-47533765)
[»] scaffold0518 (1 HSPs)
scaffold0518 (19-212)||(9459-9653)
[»] chr2 (11 HSPs)
chr2 (244-378)||(31329576-31329712)
chr2 (244-378)||(31336297-31336433)
chr2 (796-859)||(37210215-37210278)
chr2 (800-886)||(29927697-29927783)
chr2 (801-878)||(3256966-3257043)
chr2 (97-216)||(22627875-22627991)
chr2 (800-883)||(32978970-32979053)
chr2 (19-224)||(31329729-31329935)
chr2 (19-224)||(31336450-31336656)
chr2 (800-874)||(38342360-38342433)
chr2 (797-874)||(28814663-28814740)
[»] chr1 (2 HSPs)
chr1 (294-377)||(9883208-9883291)
chr1 (797-858)||(9688336-9688397)
[»] chr6 (5 HSPs)
chr6 (97-183)||(26816396-26816482)
chr6 (799-859)||(1038296-1038356)
chr6 (800-859)||(32549528-32549587)
chr6 (883-945)||(11004298-11004361)
chr6 (884-954)||(32549403-32549476)
[»] chr7 (4 HSPs)
chr7 (800-859)||(20183029-20183088)
chr7 (799-883)||(33487283-33487367)
chr7 (799-861)||(25244177-25244239)
chr7 (800-858)||(42082833-42082891)
[»] chr5 (2 HSPs)
chr5 (804-861)||(40767210-40767267)
chr5 (798-861)||(39043523-39043586)
[»] chr3 (2 HSPs)
chr3 (884-940)||(1699947-1700004)
chr3 (801-874)||(1700041-1700113)


Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 473 - 1038
Target Start/End: Original strand, 24894341 - 24894908
Alignment:
Q  473 taatgggttatagtatccattgtaccatgtttttcaatatttctttattttgcattnnnnnnnntgcctaaacatatttattctcctagtaatttataat 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  24894341 taatgggttatagtatccattgtaccatgtttttcaatatttctttattttgcattaaaaaaaatgcctaaacatatttattctcctagtaatttataat 24894440  T
Q  573 attgagtcatatattataacatgttaaaactaattattgaaattaaaatacgtcgttgaataaaataacatgacatgtaatggtggtacatcttatctat 672  Q
    |||||||||||||     ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24894441 attgagtcatata-----acatgttaaaactaattattgaaattaaaatatctcgttgaataaaataacatgacatgtaatggtggtacatcttatctat 24894535  T
Q  673 ttgaacataatgatataggtggtacaatctaaggattttaatgaaagacaatttaatttaagcggaaaatagtgatcctattaaagaccaaacatggagt 772  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24894536 ttgaacataatgatataggtggtacaatctaaggattttaatgaaagacaatttaatttaagcggaaaatagtgatcctattaaagaccgaacatggagt 24894635  T
Q  773 aaaataaagtgcatgtttttcttatttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagtt 872  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  24894636 aaaataaagtgcat-tttttcttatttgaaaattgatgttcccacatcaaaggttgtaatgaaacaccacaaaattaccaatataactttattggcagtt 24894734  T
Q  873 aattgctgatggatggaatttgaggttaaacttgtgattttacggtg-ttcttagcattgtgtgaagtgg--aaaacaattttcttcttattcatacttc 969  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  24894735 aattgttgatggatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttcttcttattcatacttc 24894834  T
Q  970 atgaattaaaatacacacatttgtttga-tttcatggatgct--cagcacccaccatt--atttgctgcttctt 1038  Q
    ||||| |||||||||||||||||||||| |||||||||||||   |||||||||||||   |||||||||||||    
T  24894835 atgaaataaaatacacacatttgtttgattttcatggatgcttcaagcacccaccatttattttgctgcttctt 24894908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 389
Target Start/End: Original strand, 24893876 - 24894257
Alignment:
Q  8 atatatgagtaaattgtagacctcacatagttaacttgctcaacaactttcccattcacaacaatgattttgaaattaatataactttagacaaaaattt 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24893876 atatatgagtcaattgtagacctcacatagttaacttgctcaacaactttcccattcacaacaatgattttgaaattaaaataactttagacaaaaattt 24893975  T
Q  108 catttccaacatttggagaaatgtaatgggattatcttcccattataacaatgtataaaactcagctttaaatttttatgttgctcttggtccgttgaaa 207  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24893976 catttccaatatttggagaaatgtaatgggattatcttcccattataacaatgtataaaactcagctttaaatttttatggtgctcttggtccgttgaaa 24894075  T
Q  208 atttaaacatcaagtacatatctaactcannnnnnncaaaatcaatagaaaacaaatcttgaaattccgacaacgtcagaatatttcataaattcattta 307  Q
    |||||||||||| ||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24894076 atttaaacatcaggtacatatctagctcatttttttcaaaatcaatagaaaacaaatcttgaaattccgacaacgtcagaatatttcataaattcattta 24894175  T
Q  308 ataacaaagtaaatatcaagacaaaacacaaagccctagatttagtcatatctaaattacgggtcttacattcttccactta 389  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24894176 ataataaagtaaatatcaagacaaaacacaaagccctagatttagtcatatctaaattacgggtcttacattcttccactta 24894257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 797 - 883
Target Start/End: Complemental strand, 53711869 - 53711783
Alignment:
Q  797 tttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgctgatg 883  Q
    |||||||||||||| || ||  ||||||||||| ||||||||||||||| ||||||| |||| || |  ||||||||| || |||||    
T  53711869 tttgaaaattgatgctctcatcttaaaggttgctatgaaacaccacaaatttaccaacataatctcatgggcagttaactgttgatg 53711783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 800 - 945
Target Start/End: Original strand, 40197828 - 40197970
Alignment:
Q  800 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgctgatggatggaatttgaggtt 899  Q
    |||||||| ||||||||||| |||||||||    ||| ||||  |||||| ||||||||| | |  ||||||||| ||| |||||||    |||| ||||    
T  40197828 gaaaattgttgttcccacatcaaaggttgctcataaaaaccatgaaattatcaatataacttcatcggcagttaactgccgatggat----tttggggtt 40197923  T
Q  900 aaacttgtgattttacggtgtt-cttagcattgtgtgaagtggaaaa 945  Q
    ||| || | ||||||  ||||| ||||||||||||||||||||||||    
T  40197924 aaatttatcattttatagtgtttcttagcattgtgtgaagtggaaaa 40197970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 798 - 859
Target Start/End: Original strand, 47533704 - 47533765
Alignment:
Q  798 ttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 859  Q
    ||||||||||  ||||| |||||||||||||  | ||||||||||||| |||||||||||||    
T  47533704 ttgaaaattgtcgttcctacattaaaggttgttaggaaacaccacaaatttaccaatataac 47533765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0518 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 9653 - 9459
Alignment:
Q  19 aattgtagacctcacatagttaacttgctcaacaactttcccattcacaacaatgattttgaaattaatataactttag-acaaaaatttcatttccaac 117  Q
    |||| |||| ||||||||||||| ||||||||| | |||| | |||  || |||| ||||||||| || |||||||| | |||||| | ||||||  ||     
T  9653 aattctagatctcacatagttaaattgctcaactagtttctctttctaaataatggttttgaaatcaaaataactttcggacaaaattctcatttataaa 9554  T
Q  118 atttggagaaatgtaatgggattatcttcccattataacaatgtataaaactcagctttaaatttttatgttgctcttggtccgttgaaaattta 212  Q
    |||||||||||| ||||||||| || |||||||||||||||| ||||||||||   |||||||||| |||  ||||||| |||||||||||||||    
T  9553 atttggagaaatataatgggatcatattcccattataacaatttataaaactcttgtttaaattttcatgacgctcttgatccgttgaaaattta 9459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 3e-20; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 244 - 378
Target Start/End: Complemental strand, 31329712 - 31329576
Alignment:
Q  244 caaaatcaatagaaaacaaatcttgaaattccgacaacgtcagaatatttcataaattcatttaataac---aaagtaaatatcaagacaaaacacaaag 340  Q
    ||||||||||||||||||||| ||| ||||||||||||||||  | |||||||||| ||||||| ||||   |||  ||| ||||| || ||| ||||||    
T  31329712 caaaatcaatagaaaacaaattttggaattccgacaacgtcaagacatttcataaactcatttattaacaaaaaaaaaaacatcaaaac-aaatacaaag 31329614  T
Q  341 ccctagatttagtcatatctaaattacgggtcttacat 378  Q
    ||||| ||||||||  ||| ||||||||||||||||||    
T  31329613 ccctaaatttagtcgcatcaaaattacgggtcttacat 31329576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 244 - 378
Target Start/End: Complemental strand, 31336433 - 31336297
Alignment:
Q  244 caaaatcaatagaaaacaaatcttgaaattccgacaacgtcagaatatttcataaattcatttaataac---aaagtaaatatcaagacaaaacacaaag 340  Q
    ||||||||||||||||||||| ||| ||||||||||||||||  | |||||||||| ||||||| ||||   |||  ||| ||||| || ||| ||||||    
T  31336433 caaaatcaatagaaaacaaattttggaattccgacaacgtcaagacatttcataaactcatttattaacaaaaaaaaaaacatcaaaac-aaatacaaag 31336335  T
Q  341 ccctagatttagtcatatctaaattacgggtcttacat 378  Q
    ||||| ||||||||  ||| ||||||||||||||||||    
T  31336334 ccctaaatttagtcgcatcaaaattacgggtcttacat 31336297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 796 - 859
Target Start/End: Original strand, 37210215 - 37210278
Alignment:
Q  796 atttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 859  Q
    |||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||    
T  37210215 atttgaaaattgatgttcccacatcaaaggttgctaggaaacaccacgaaattaccaatataac 37210278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 800 - 886
Target Start/End: Original strand, 29927697 - 29927783
Alignment:
Q  800 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgctgatggat 886  Q
    |||| ||| ||||||||||| ||||||||  | |||||||||| |||||||||||||||||| |  ||||||||| |||||||||||    
T  29927697 gaaatttgttgttcccacatcaaaggttgataggaaacaccacgaaattaccaatataacctcatcggcagttaactgctgatggat 29927783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 801 - 878
Target Start/End: Original strand, 3256966 - 3257043
Alignment:
Q  801 aaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgc 878  Q
    ||||||| | ||||||||||||||||||| | ||||||||||||||||||||| ||||||| |  |||| ||||||||    
T  3256966 aaaattgttattcccacattaaaggttgctacgaaacaccacaaaattaccaacataacctcatcggcaattaattgc 3257043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 216
Target Start/End: Complemental strand, 22627991 - 22627875
Alignment:
Q  97 gacaaaaatttcatttccaacatttggagaaatgtaatgggattatcttcccattataacaatgtataaaactcagctttaaatttttatgttgctcttg 196  Q
    ||||||| | ||||| |||| ||||| |||||| |||||||||||||||| |||| ||||||||||||||| |   ||||||||||| |||  |||||||    
T  22627991 gacaaaattctcattaccaaaatttgtagaaatataatgggattatcttctcattctaacaatgtataaaatt---ctttaaattttcatgacgctcttg 22627895  T
Q  197 gtccgttgaaaatttaaaca 216  Q
     ||| | | |||||||||||    
T  22627894 atccataggaaatttaaaca 22627875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 800 - 883
Target Start/End: Original strand, 32978970 - 32979053
Alignment:
Q  800 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgctgatg 883  Q
    |||||||| ||||||||||| | ||||||| | ||||||||||||||||| |||||||| || | ||| |||||| ||| ||||    
T  32978970 gaaaattgttgttcccacatcataggttgctaggaaacaccacaaaattatcaatataaactcattggtagttaactgccgatg 32979053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 31329935 - 31329729
Alignment:
Q  19 aattgtagacctcacatagttaacttgctcaacaactttcccattcacaacaatgattttgaaattaatataactttaga-caaaaatttcatttccaac 117  Q
    |||| |||| ||||| ||||||| ||||||||| | |||| ||||   |  |||| ||||||||| || ||||||||  | ||||||| |  |||| ||     
T  31329935 aattctagatctcacgtagttaaattgctcaacgagtttctcatttcaagtaatggttttgaaatcaaaataactttccaacaaaaatcttgtttcaaaa 31329836  T
Q  118 atttggagaaatgtaatgggattatcttcccattataacaatgtataaaactcagctttaaatttttatgttgctcttggtccgttgaaaatttaaacat 217  Q
    |||||||||||| ||||| ||| |||| |||||   | |||||| ||||||||   |||||||||| |||  ||||||||||| || ||||||||||||     
T  31329835 atttggagaaatataatgagatcatctacccatacgagcaatgtgtaaaactcttgtttaaattttcatgacgctcttggtccattcaaaatttaaacaa 31329736  T
Q  218 caagtac 224  Q
    ||| |||    
T  31329735 caaatac 31329729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 31336656 - 31336450
Alignment:
Q  19 aattgtagacctcacatagttaacttgctcaacaactttcccattcacaacaatgattttgaaattaatataactttaga-caaaaatttcatttccaac 117  Q
    |||| |||| ||||| ||||||| ||||||||| | |||| ||||   |  |||| ||||||||| || ||||||||  | ||||||| |  |||| ||     
T  31336656 aattctagatctcacgtagttaaattgctcaacgagtttctcatttcaagtaatggttttgaaatcaaaataactttccaacaaaaatcttgtttcaaaa 31336557  T
Q  118 atttggagaaatgtaatgggattatcttcccattataacaatgtataaaactcagctttaaatttttatgttgctcttggtccgttgaaaatttaaacat 217  Q
    |||||||||||| ||||| ||| |||| |||||   | |||||| ||||||||   |||||||||| |||  ||||||||||| || ||||||||||||     
T  31336556 atttggagaaatataatgagatcatctacccatacgagcaatgtgtaaaactcttgtttaaattttcatgacgctcttggtccattcaaaatttaaacaa 31336457  T
Q  218 caagtac 224  Q
    ||| |||    
T  31336456 caaatac 31336450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 800 - 874
Target Start/End: Complemental strand, 38342433 - 38342360
Alignment:
Q  800 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaa 874  Q
    |||||||| ||||||||| | |||| |||| |||||||||||| |||||||||||||||||| |  |||||||||    
T  38342433 gaaaattgttgttcccacgtcaaag-ttgctatgaaacaccacgaaattaccaatataacctcatcggcagttaa 38342360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 797 - 874
Target Start/End: Original strand, 28814663 - 28814740
Alignment:
Q  797 tttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaa 874  Q
    ||||||||||||||||||||  ||||||||||  |||||| ||||| ||||||  ||||||| |||| || |||||||    
T  28814663 tttgaaaattgatgttcccaagttaaaggttgttatgaaataccacgaaattattaatataatcttattgacagttaa 28814740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 7e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 294 - 377
Target Start/End: Original strand, 9883208 - 9883291
Alignment:
Q  294 cataaattcatttaataacaaagtaaatatcaagacaaaacacaaagccctagatttagtcatatctaaattacgggtcttaca 377  Q
    |||||| ||||||| || ||||||||  |||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||    
T  9883208 cataaaatcatttattatcaaagtaaccatcaagacaaaatacaaatccctagatttaatcatatctaaattacaggtcttaca 9883291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 797 - 858
Target Start/End: Complemental strand, 9688397 - 9688336
Alignment:
Q  797 tttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataa 858  Q
    |||||||||||||||||||| || || ||| |  |||||||||||| ||||||| |||||||    
T  9688397 tttgaaaattgatgttcccatatgaatggtggatatgaaacaccacgaaattactaatataa 9688336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 3e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 26816482 - 26816396
Alignment:
Q  97 gacaaaaatttcatttccaacatttggagaaatgtaatgggattatcttcccattataacaatgtataaaactcagctttaaatttt 183  Q
    ||||||||| ||||||| || |||||||||||| ||||||||| || |||||||| ||||||||||||||||||   ||||||||||    
T  26816482 gacaaaaatctcatttctaaaatttggagaaatataatgggatcattttcccattttaacaatgtataaaactcttgtttaaatttt 26816396  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 799 - 859
Target Start/End: Original strand, 1038296 - 1038356
Alignment:
Q  799 tgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 859  Q
    ||||||||||||||||||||| ||||||||  ||||||||| |||||||||||||||||||    
T  1038296 tgaaaattgatgttcccacatcaaaggttgttatgaaacacaacaaaattaccaatataac 1038356  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 800 - 859
Target Start/End: Complemental strand, 32549587 - 32549528
Alignment:
Q  800 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 859  Q
    |||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||||||||    
T  32549587 gaaaattgatgttcccacatcaaaagttgctatgaaacaccacgaaattaccaatataac 32549528  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 883 - 945
Target Start/End: Original strand, 11004298 - 11004361
Alignment:
Q  883 ggatggaatttgaggttaaacttgtgattttacggtg-ttcttagcattgtgtgaagtggaaaa 945  Q
    |||||||||||| |||||||||||| ||||||   || |||||||| |||||||||||||||||    
T  11004298 ggatggaatttggggttaaacttgtcattttataatgtttcttagctttgtgtgaagtggaaaa 11004361  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 884 - 954
Target Start/End: Complemental strand, 32549476 - 32549403
Alignment:
Q  884 gatggaatttgaggttaaacttgtgattttacggtgtt-cttagcattgtgtgaa--gtggaaaacaattttct 954  Q
    |||| |||||| |||||||||||| |||| | |||||| ||||||||||||||||  ||| |||||||||||||    
T  32549476 gatgaaatttggggttaaacttgtcatttaatggtgtttcttagcattgtgtgaaatgtgaaaaacaattttct 32549403  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 800 - 859
Target Start/End: Original strand, 20183029 - 20183088
Alignment:
Q  800 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 859  Q
    |||||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||    
T  20183029 gaaaattgatgttcccacgttaaaggttgctataaaacaccacaaaattatcaatataac 20183088  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 799 - 883
Target Start/End: Complemental strand, 33487367 - 33487283
Alignment:
Q  799 tgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgctgatg 883  Q
    ||||||||||||||||| ||| |||| |||| |||||||||||| |||||| |||||||||| ||  ||||||||| ||| ||||    
T  33487367 tgaaaattgatgttcccgcatcaaagattgctatgaaacaccacgaaattatcaatataaccctatgggcagttaactgccgatg 33487283  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 799 - 861
Target Start/End: Original strand, 25244177 - 25244239
Alignment:
Q  799 tgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataacct 861  Q
    |||| |||| ||||||||||| ||||| ||||| ||||||||| |||| ||||||||||||||    
T  25244177 tgaagattgctgttcccacatcaaaggatgcaaggaaacaccagaaaaataccaatataacct 25244239  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 800 - 858
Target Start/End: Complemental strand, 42082891 - 42082833
Alignment:
Q  800 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataa 858  Q
    |||||| | ||||||||||| | || |||| |||||||||||| |||||||||||||||    
T  42082891 gaaaatcgttgttcccacatcatagattgctatgaaacaccacgaaattaccaatataa 42082833  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 804 - 861
Target Start/End: Complemental strand, 40767267 - 40767210
Alignment:
Q  804 attgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataacct 861  Q
    |||||||||||||||| ||||| ||| ||||||||||| |||| ||||||||||||||    
T  40767267 attgatgttcccacatcaaagggtgctatgaaacaccagaaaaataccaatataacct 40767210  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 798 - 861
Target Start/End: Original strand, 39043523 - 39043586
Alignment:
Q  798 ttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataacct 861  Q
    ||||||||| |||||||||||| ||| ||||| | ||||||||| ||||||||||| |||||||    
T  39043523 ttgaaaattaatgttcccacatcaaaagttgctaggaaacaccataaaattaccaaaataacct 39043586  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 940
Target Start/End: Complemental strand, 1700004 - 1699947
Alignment:
Q  884 gatggaatttgaggttaaacttgtgattttacggtg-ttcttagcattgtgtgaagtg 940  Q
    ||||||||||||||||||| |||| |||| | |||| |||||||||||||||||||||    
T  1700004 gatggaatttgaggttaaatttgttatttcatggtgtttcttagcattgtgtgaagtg 1699947  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 801 - 874
Target Start/End: Complemental strand, 1700113 - 1700041
Alignment:
Q  801 aaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaa 874  Q
    ||||||||||||||||| || |||||||| | ||||||| |  ||||||||||||||| || || |||||||||    
T  1700113 aaaattgatgttcccac-ttcaaggttgctaggaaacactatgaaattaccaatataatctcaccggcagttaa 1700041  T

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