View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4976-Insertion-2 (Length: 967)
Name: NF4976-Insertion-2
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4976-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 887; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 887; E-Value: 0
Query Start/End: Original strand, 7 - 934
Target Start/End: Original strand, 10163458 - 10164387
Alignment:
| Q |
7 |
atataatgcaagacatactgcatcctgttctgtgtgttctaaaatctacccaacaccatgtttgctcagcatacatgatgtatccgaagctcttgattct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10163458 |
atataatgcaagacatactgcatcctgttctgtgtgttctaaaatctacccaacaccatgtttgctcagcatacatgatgtatccgaagctcttgattct |
10163557 |
T |
|
| Q |
107 |
tactttcaggcaaaagttgtgtgtacctatgacatggtagtgtgtatgtctaagctctaaatatgattcaatgtgatgtcatgaaacaattttatatact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10163558 |
tactttcaggcaaaagttgtgtgtacctatgacatggtagtgtgtatgtctaagctctaaatatgattcaatgtgatgtcatgaaacaattttatatact |
10163657 |
T |
|
| Q |
207 |
attgcttctatcatacacttcagtttgtaattgaagaattaactagttggatgtttcttctctttgttgtaagatattgaacttagcttttggattcttc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10163658 |
attgcttctatcatacacttcagtttgtaattgaagaattaactagttggatgtttcttctctttgttgtaagatattgaacttagcttttggattcttc |
10163757 |
T |
|
| Q |
307 |
aaacttccttagtaaagtagtcacctattttttcttccttagatttaagatcttacaaattgcaacaagaaagaccatgcttacaattcagttattttga |
406 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10163758 |
aaatttccttagtaaagtagtcacctattttttcttccttagatttaagatcttacaaattgcaacaagaaagaccatgcttacaattcagttattttga |
10163857 |
T |
|
| Q |
407 |
acaatattctgttcttttttacaattcgattgtttagagctcataattgggtttgtaaaaagatacacgaaatgatttggaattaaacagtctactgtta |
506 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
10163858 |
acaatattctgttcttttttacaatttgattgtttagagctcataattgggtttgtaaaaagatacacgaaatgatttggaattaaacagtctaccgtta |
10163957 |
T |
|
| Q |
507 |
tagataactaataacagcgatattatgatttcatgtgattcatgtaactcacctcaccttattatgagaaaaggaatggtcgttgttgctgtgtattata |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10163958 |
tagataactaataacagcgatattatgatttcatgtgattcatgtaactcacctcaccttattatgagaaaaggaatggtcgttgttgctgtgtattata |
10164057 |
T |
|
| Q |
607 |
gttagcatgttactttttggcgttaaaatatggaaatctctctattaggtgacaatctcttcaacatggttcttatgtctttgtcatatagtatgatgct |
706 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10164058 |
gttagcatgttactttttggcgttaaaatat-gaaatctctctattaggtgacaatctcttcaacatggttcttatgtctttgtcatatagtatgatgct |
10164156 |
T |
|
| Q |
707 |
tagtggaaggttgcggtttgaaattcaaaagccacaaaagtaggcagcagcatctggttaacaagcataagttcccgacatatcattcgagttttttc-a |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
10164157 |
tagtggaaggttgcggtttgaaattcaaaagccacaaaagtaggcagcagcatctggttaacaagcataagttcccgacatatcattcgagttttttcaa |
10164256 |
T |
|
| Q |
806 |
aaagtctcagccttcaaagaaacagagagtaaagtgtcaacgc-aaaaactttctcataaggaggatacttcaggaatgatagaagtgg-aaatgcagcc |
903 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
10164257 |
aaagtctcagccttcaaagaaacagagagtaaagtgtcaacgcaaaaaactttctcataaggaggatacttcaggaatgatagaagtggaaaatgcagcc |
10164356 |
T |
|
| Q |
904 |
atagataaccttgtttcagtctctagaatga |
934 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
10164357 |
atagataaccttgtttcagtctctagaatga |
10164387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 656 - 922
Target Start/End: Original strand, 10181368 - 10181635
Alignment:
| Q |
656 |
tgacaatctcttcaacatggttcttatgtctttgtcatatagtatga-tgcttagtggaaggttgcggtttgaaattcaaaagccacaaaagtaggcagc |
754 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
10181368 |
tgacaatctctataacatggttcttatgtctttgtcatatagtatgaatgcttagtggaaggttgcggtttgaaattcaaaagctacaaaagtaggcagc |
10181467 |
T |
|
| Q |
755 |
agcatctggttaacaagcataagttcccgacatatcattcgagttttttcaaaagtctcagccttcaaagaaacagagagtaaagtgtcaacgcaaaaa- |
853 |
Q |
| |
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| ||||| ||| |||||||||| |||||||| |||||||||||||| | ||| ||| |||||||||||||| || |||||| |||||||||||| |
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| T |
10181468 |
accatctagttgacaagcataaattcccgac--gtcattcgagtttttcaagaaggctcttccttcaaagaaacacaggataaagtctcaacgcaaaaag |
10181565 |
T |
|
| Q |
854 |
ctttctcataaggaggatacttcaggaatgatagaagtgg-aaatgcagccatagataaccttgtttcag |
922 |
Q |
| |
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| |||||| ||||||||||||||||||||||| ||||||| ||||||||| || ||| |||| ||||||| |
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| T |
10181566 |
ccttctcaaaaggaggatacttcaggaatgatggaagtggaaaatgcagctatggatgacctcgtttcag |
10181635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 656 - 922
Target Start/End: Original strand, 10186408 - 10186675
Alignment:
| Q |
656 |
tgacaatctcttcaacatggttcttatgtctttgtcatatagtatga-tgcttagtggaaggttgcggtttgaaattcaaaagccacaaaagtaggcagc |
754 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
10186408 |
tgacaatctctataacatggttcttatgtctttgtcatatagtatgaatgcttagtggaaggttgcggtttgaaattcaaaagctacaaaagtaggcagc |
10186507 |
T |
|
| Q |
755 |
agcatctggttaacaagcataagttcccgacatatcattcgagttttttcaaaagtctcagccttcaaagaaacagagagtaaagtgtcaacgcaaaaa- |
853 |
Q |
| |
|
| ||||| ||| |||||||||| |||||||| |||||||||||||| | ||| ||| |||||||||||||| || |||||| |||||||||||| |
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|
| T |
10186508 |
accatctagttgacaagcataaattcccgac--gtcattcgagtttttcaagaaggctcttccttcaaagaaacacaggataaagtctcaacgcaaaaag |
10186605 |
T |
|
| Q |
854 |
ctttctcataaggaggatacttcaggaatgatagaagtgg-aaatgcagccatagataaccttgtttcag |
922 |
Q |
| |
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| |||||| ||||||||||||||||||||||| ||||||| ||||||||| || ||| |||| ||||||| |
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|
| T |
10186606 |
ccttctcaaaaggaggatacttcaggaatgatggaagtggaaaatgcagctatggatgacctcgtttcag |
10186675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 10172833 - 10172992
Alignment:
| Q |
12 |
atgcaagacatactgcatcctgttctgtgtgttctaaaatctacccaacaccatgtttgctcagcatacatgatgtatccgaagctcttgattcttactt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||| ||| || ||||||||||| ||| ||||||||||||||| |||||||| ||| |
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|
| T |
10172833 |
atgcaagacatactgcatcctgttctgtgtgttctagagtctaccccacatcacgtttgctcagcctac---atgtatccgaagctcatgattctttctt |
10172929 |
T |
|
| Q |
112 |
tcaggcaaaagttgtgtgtacctatgacatggtagtgtgtatgtctaagctctaaatatgatt |
174 |
Q |
| |
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|||||||||||||| || ||||||||||||||||| |||||||| |||| ||||||||| |
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|
| T |
10172930 |
tcaggcaaaagttgctcgtggctatgacatggtagtgtacatgtctaaactctgaatatgatt |
10172992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 10180354 - 10180517
Alignment:
| Q |
8 |
tataatgcaagacatactgcatcctgttctgtgtgttctaaaatctacccaacaccatgtttgctcagcatacatgatgtatccgaagctcttgattctt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||| ||| || ||||||||||| ||| ||||||||||||||| |||||||| |
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|
| T |
10180354 |
tataatgcaagacatactgcatcctgttctgtgtgttctagagtctaccccacatcacgtttgctcagcctac---atgtatccgaagctcatgattctt |
10180450 |
T |
|
| Q |
108 |
actttcaggcaaaagttgtgtgtacctatgacatggtagtgtgtatgtctaagctctaaatatgatt |
174 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| || ||||| |||| ||||||||| |
|
|
| T |
10180451 |
tctttcaggcaaaagttgctcgtggctatgacatggtagtgtacatttctaaactctgaatatgatt |
10180517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 10185398 - 10185557
Alignment:
| Q |
12 |
atgcaagacatactgcatcctgttctgtgtgttctaaaatctacccaacaccatgtttgctcagcatacatgatgtatccgaagctcttgattcttactt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||| ||| | ||||||||||| ||| ||||||||||||||| |||||||| ||| |
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|
| T |
10185398 |
atgcaagacatactgcatcctgttctgtgtgttctagagtctaccccacataacgtttgctcagcctac---atgtatccgaagctcatgattctttctt |
10185494 |
T |
|
| Q |
112 |
tcaggcaaaagttgtgtgtacctatgacatggtagtgtgtatgtctaagctctaaatatgatt |
174 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| |||||||| |||| ||||||||| |
|
|
| T |
10185495 |
tcaggcaaaagttgctcgtggctatgacatggtagtgtacatgtctaaactctgaatatgatt |
10185557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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