View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4976-Insertion-3 (Length: 917)

Name: NF4976-Insertion-3
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4976-Insertion-3
NF4976-Insertion-3
[»] chr3 (42 HSPs)
chr3 (7-917)||(42880869-42881800)
chr3 (465-614)||(2150628-2150777)
chr3 (435-567)||(19873073-19873204)
chr3 (403-567)||(48080010-48080173)
chr3 (452-567)||(50508868-50508983)
chr3 (503-567)||(11671784-11671848)
chr3 (618-709)||(30762032-30762123)
chr3 (452-617)||(35688298-35688465)
chr3 (474-545)||(51055477-51055548)
chr3 (474-599)||(48583747-48583873)
chr3 (483-567)||(5041050-5041134)
chr3 (435-564)||(25467466-25467598)
chr3 (507-564)||(33558789-33558846)
chr3 (458-599)||(54444359-54444501)
chr3 (507-596)||(35203302-35203391)
chr3 (431-519)||(49374769-49374856)
chr3 (452-567)||(12905611-12905726)
chr3 (475-599)||(8340160-8340286)
chr3 (505-567)||(40563992-40564054)
chr3 (435-617)||(19454765-19454949)
chr3 (452-564)||(42096741-42096854)
chr3 (192-265)||(42880743-42880815)
chr3 (481-556)||(7940356-7940431)
chr3 (507-599)||(14418284-14418376)
chr3 (501-568)||(22845125-22845191)
chr3 (508-600)||(33099698-33099790)
chr3 (525-567)||(23298324-23298366)
chr3 (503-617)||(30248000-30248115)
chr3 (435-564)||(45079204-45079333)
chr3 (503-564)||(26787597-26787657)
chr3 (476-568)||(46819180-46819272)
chr3 (492-559)||(24987411-24987478)
chr3 (513-568)||(25630313-25630368)
chr3 (474-564)||(27064210-27064301)
chr3 (452-519)||(30964594-30964661)
chr3 (452-519)||(30980406-30980473)
chr3 (474-617)||(41410203-41410347)
chr3 (7-169)||(42882430-42882593)
chr3 (503-613)||(2013004-2013115)
chr3 (474-559)||(6408592-6408678)
chr3 (481-559)||(19618710-19618788)
chr3 (517-567)||(39952573-39952623)
[»] chr5 (27 HSPs)
chr5 (435-567)||(41983233-41983364)
chr5 (452-561)||(22632242-22632351)
chr5 (435-564)||(7978016-7978144)
chr5 (435-567)||(29455776-29455907)
chr5 (430-564)||(16620307-16620441)
chr5 (503-599)||(24489032-24489128)
chr5 (430-615)||(16186748-16186933)
chr5 (507-567)||(6224837-6224897)
chr5 (503-567)||(18595413-18595477)
chr5 (503-567)||(31149686-31149750)
chr5 (452-599)||(4901901-4902047)
chr5 (435-617)||(639302-639484)
chr5 (503-564)||(14087715-14087776)
chr5 (505-621)||(23141560-23141677)
chr5 (452-568)||(36470441-36470557)
chr5 (474-559)||(4572291-4572376)
chr5 (452-617)||(19254428-19254594)
chr5 (449-617)||(38309774-38309943)
chr5 (502-615)||(5657662-5657777)
chr5 (474-595)||(15673941-15674064)
chr5 (474-564)||(34718777-34718868)
chr5 (505-617)||(36323077-36323188)
chr5 (474-564)||(41692461-41692552)
chr5 (481-559)||(14088298-14088376)
chr5 (452-519)||(32302390-32302457)
chr5 (474-595)||(33347037-33347160)
chr5 (452-564)||(35853523-35853636)
[»] chr7 (30 HSPs)
chr7 (408-617)||(2959899-2960108)
chr7 (403-567)||(43702406-43702569)
chr7 (435-617)||(44300704-44300886)
chr7 (452-564)||(43224325-43224437)
chr7 (452-564)||(36074118-36074231)
chr7 (410-559)||(5924068-5924218)
chr7 (431-601)||(38469876-38470046)
chr7 (507-567)||(9477708-9477768)
chr7 (481-568)||(3551524-3551611)
chr7 (474-617)||(28067212-28067356)
chr7 (474-616)||(30391577-30391720)
chr7 (452-617)||(1875982-1876150)
chr7 (474-558)||(30738635-30738719)
chr7 (452-616)||(40789473-40789638)
chr7 (474-599)||(45112223-45112350)
chr7 (503-598)||(16278487-16278582)
chr7 (466-564)||(38398427-38398525)
chr7 (435-617)||(40342257-40342439)
chr7 (474-559)||(19805067-19805152)
chr7 (503-564)||(42284563-42284624)
chr7 (492-564)||(38400969-38401041)
chr7 (435-599)||(48558643-48558807)
chr7 (474-564)||(17172213-17172304)
chr7 (435-595)||(36072596-36072757)
chr7 (452-599)||(11244031-11244180)
chr7 (486-566)||(25309506-25309586)
chr7 (507-567)||(33067473-33067533)
chr7 (513-559)||(43218675-43218721)
chr7 (623-712)||(18319880-18319969)
chr7 (507-559)||(21153261-21153314)
[»] chr1 (41 HSPs)
chr1 (474-616)||(610732-610874)
chr1 (431-567)||(945460-945595)
chr1 (474-599)||(29512173-29512298)
chr1 (449-566)||(32835504-32835621)
chr1 (435-616)||(19996619-19996799)
chr1 (435-616)||(7842550-7842730)
chr1 (431-567)||(25059081-25059216)
chr1 (449-564)||(31873297-31873412)
chr1 (474-617)||(20414990-20415134)
chr1 (449-598)||(48985127-48985278)
chr1 (431-600)||(9472928-9473098)
chr1 (452-566)||(10786217-10786331)
chr1 (474-601)||(31107606-31107734)
chr1 (452-568)||(973509-973625)
chr1 (435-567)||(19506367-19506498)
chr1 (435-558)||(28220952-28221074)
chr1 (452-599)||(2465514-2465661)
chr1 (415-599)||(35949559-35949744)
chr1 (474-621)||(48662679-48662828)
chr1 (492-568)||(424611-424687)
chr1 (435-596)||(31646262-31646422)
chr1 (507-559)||(38491461-38491513)
chr1 (504-559)||(2975245-2975300)
chr1 (504-559)||(2978471-2978526)
chr1 (504-559)||(34321000-34321057)
chr1 (533-599)||(13797032-13797098)
chr1 (452-564)||(30489666-30489779)
chr1 (474-559)||(44327930-44328015)
chr1 (476-599)||(48796561-48796686)
chr1 (474-564)||(4893287-4893378)
chr1 (474-564)||(29185109-29185200)
chr1 (401-596)||(29426274-29426471)
chr1 (511-617)||(16177013-16177120)
chr1 (452-564)||(35659548-35659661)
chr1 (507-564)||(21260743-21260800)
chr1 (531-601)||(30622958-30623028)
chr1 (501-564)||(3821270-3821334)
chr1 (473-564)||(50099834-50099926)
chr1 (468-568)||(236381-236483)
chr1 (474-559)||(29054605-29054691)
chr1 (530-567)||(40044995-40045032)
[»] chr4 (38 HSPs)
chr4 (430-600)||(8614535-8614704)
chr4 (403-617)||(22829700-22829914)
chr4 (431-559)||(1731044-1731171)
chr4 (452-564)||(22313343-22313455)
chr4 (435-567)||(34459616-34459747)
chr4 (481-617)||(51806865-51807002)
chr4 (430-564)||(14595289-14595423)
chr4 (512-601)||(7117885-7117973)
chr4 (435-615)||(29405809-29405989)
chr4 (452-564)||(33983147-33983259)
chr4 (452-613)||(8644170-8644331)
chr4 (505-567)||(28928608-28928670)
chr4 (452-596)||(31713589-31713735)
chr4 (452-553)||(33733387-33733489)
chr4 (474-559)||(3387209-3387294)
chr4 (475-559)||(2224950-2225034)
chr4 (403-617)||(22247822-22248037)
chr4 (512-617)||(44808532-44808637)
chr4 (503-598)||(50981907-50982004)
chr4 (503-562)||(25938426-25938485)
chr4 (474-564)||(52802252-52802343)
chr4 (474-564)||(53140643-53140734)
chr4 (507-564)||(21297273-21297331)
chr4 (452-522)||(29994330-29994400)
chr4 (433-564)||(56445149-56445281)
chr4 (482-599)||(7262052-7262170)
chr4 (449-559)||(39485126-39485238)
chr4 (460-559)||(41003338-41003440)
chr4 (474-600)||(45097594-45097722)
chr4 (492-568)||(46030305-46030381)
chr4 (507-566)||(5798309-5798368)
chr4 (507-554)||(7250519-7250566)
chr4 (501-559)||(21245899-21245956)
chr4 (452-522)||(31786424-31786494)
chr4 (481-559)||(42755380-42755458)
chr4 (510-567)||(2073611-2073668)
chr4 (435-540)||(11034690-11034794)
chr4 (474-559)||(52595577-52595662)
[»] chr2 (20 HSPs)
chr2 (431-567)||(667963-668098)
chr2 (503-599)||(29155364-29155460)
chr2 (449-597)||(16711305-16711453)
chr2 (478-617)||(39767073-39767212)
chr2 (503-559)||(4592194-4592250)
chr2 (504-621)||(12757815-12757932)
chr2 (452-559)||(20937043-20937149)
chr2 (435-617)||(2656779-2656961)
chr2 (453-599)||(8753843-8753989)
chr2 (481-559)||(31440636-31440714)
chr2 (534-567)||(15150219-15150252)
chr2 (474-616)||(15234329-15234473)
chr2 (402-562)||(30241377-30241536)
chr2 (474-564)||(4289659-4289750)
chr2 (492-559)||(13142572-13142639)
chr2 (474-617)||(29546035-29546181)
chr2 (435-596)||(41935486-41935648)
chr2 (516-566)||(17154140-17154190)
chr2 (491-560)||(40507630-40507700)
chr2 (515-568)||(38958672-38958725)
[»] chr8 (23 HSPs)
chr8 (435-617)||(20216192-20216374)
chr8 (435-617)||(20235790-20235972)
chr8 (474-567)||(6109645-6109738)
chr8 (435-617)||(859487-859669)
chr8 (460-566)||(25500155-25500261)
chr8 (474-559)||(2620961-2621046)
chr8 (435-617)||(221968-222151)
chr8 (435-617)||(691123-691306)
chr8 (435-617)||(735591-735774)
chr8 (503-567)||(19643506-19643570)
chr8 (504-621)||(43239235-43239352)
chr8 (503-566)||(24891411-24891474)
chr8 (503-616)||(26561173-26561284)
chr8 (503-599)||(43511244-43511340)
chr8 (452-598)||(7580058-7580203)
chr8 (474-559)||(2472281-2472366)
chr8 (467-559)||(15961671-15961764)
chr8 (452-599)||(38020049-38020198)
chr8 (415-617)||(15542100-15542302)
chr8 (503-566)||(25419319-25419382)
chr8 (484-565)||(45553100-45553181)
chr8 (452-559)||(37226772-37226880)
chr8 (474-556)||(30801271-30801352)
[»] scaffold0011 (1 HSPs)
scaffold0011 (449-600)||(250156-250309)
[»] chr6 (8 HSPs)
chr6 (504-567)||(12429483-12429546)
chr6 (358-564)||(6937958-6938161)
chr6 (452-568)||(28769886-28770002)
chr6 (474-564)||(24447114-24447205)
chr6 (435-599)||(6337889-6338054)
chr6 (474-564)||(1221703-1221794)
chr6 (474-559)||(20691583-20691669)
chr6 (474-559)||(31070826-31070910)
[»] scaffold0323 (1 HSPs)
scaffold0323 (618-709)||(10987-11078)
[»] scaffold0005 (1 HSPs)
scaffold0005 (430-564)||(221955-222089)
[»] scaffold0602 (1 HSPs)
scaffold0602 (452-613)||(5009-5170)
[»] scaffold0312 (1 HSPs)
scaffold0312 (492-568)||(5862-5938)
[»] scaffold0249 (1 HSPs)
scaffold0249 (452-599)||(20034-20182)
[»] scaffold0056 (1 HSPs)
scaffold0056 (506-564)||(72589-72646)
[»] scaffold0242 (2 HSPs)
scaffold0242 (507-617)||(13026-13137)
scaffold0242 (507-617)||(21861-21972)
[»] scaffold0160 (1 HSPs)
scaffold0160 (474-617)||(26066-26211)
[»] scaffold0938 (1 HSPs)
scaffold0938 (545-617)||(561-633)
[»] scaffold0062 (2 HSPs)
scaffold0062 (545-617)||(23819-23891)
scaffold0062 (545-617)||(33987-34059)


Alignment Details
Target: chr3 (Bit Score: 671; Significance: 0; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 7 - 917
Target Start/End: Original strand, 42880869 - 42881800
Alignment:
Q  7 actaatggtatgtttgtttcgtaatgaaatattacttttgaggagaaattattgtttgtagcttgttaaaaccacaacaaattagtgttggaacgcatga 106  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42880869 actaatggtatgtttgtttcgtaatgaaatattacttttgagaagaaattattgtttgtagcttgttaaaaccacaacaaattagtgttggaacgcatga 42880968  T
Q  107 atccttctttcaccgtcaaaccaaggcgtttattagtctatgatgcacaaacaagatagtgttgtattatgcaaaagcatggcta--------------- 191  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||                   
T  42880969 atccttctttcaccgtcaaaccaaggcgtttatcagtctatgatgcacaaacaagatagtgttgtattatgcaaaagcatggctacatttgttaatgtag 42881068  T
Q  192 -----ttggtattggaacttttcttctatccatggacaacttaggcaaatgcaaggaaatttcatgtctggttttcagaatcaagaaatgtgatcgatgg 286  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42881069 atcttttggtattggaacttttcttctatccatggacaacttaggcaaatgcaaggaaatttcatgtctggttttcagaatcaagaaatgtgatcgatgg 42881168  T
Q  287 gannnnnnnnccttaaaatggaannnnnnn-cccttgtcnnnnnnnnnnnnnnnnnggaaatgtgatcgatggggatggcaatggtaactctatgggcag 385  Q
    ||        |||||||||||||        ||||||||                 ||||||||||||||||||||||||||||||||||||||||||||    
T  42881169 gattttttttccttaaaatggaattttttttcccttgtcaaaaaaataaaataaaaggaaatgtgatcgatggggatggcaatggtaactctatgggcag 42881268  T
Q  386 ggtatacaccgccctatcccacacccgcatttgtaaaaaataattgtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcaccta 485  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  42881269 ggtatacaccgccctatcccacacccgtatttgtaaaaaataattgtatcctcgtgggcaacaaactttagtgtcctttcccatattttatgggcaccta 42881368  T
Q  486 agtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaa 585  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||        ||||||||||    
T  42881369 agtggtcatacctgaatccattacccgtactttaactgtaaaaggacaataaaaacatcacaattgaaataaaactatggtc-aaaaaaattcaaatcaa 42881467  T
Q  586 ctcataaaatagtacacatcgtggtatttagcaaaaggttgtcgtggagttggagtttagctaggctgaaaattcaaccttgtttgttctacgagtggag 685  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42881468 ctcataaaatagtacacatcgtagtatttagcaaaaggttgtcgtggagttggagtttagctaggctgaaaattctaccttgtttgttctacgagtggag 42881567  T
Q  686 gtggaatccaaagtggtgccttggtgtgatttgcggctgaacagtgtgctttaggggtgtttttgcagctg-tgcagtggtgctgtggtgttttgtcagc 784  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  42881568 gtggaatccgaagtggtgccttggtgtgatttgcggctgaacagtgtgctttaggggtgtttttgcagctgctgcattggtgctgtggtgttttgtcagc 42881667  T
Q  785 gtatgagcctttcctgggttcttgctgttgctgctgttgtgtcttgcaggtctgtttgctgctaggcgctttgggtagtggctgctgtcatgatagcaga 884  Q
    || ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42881668 gtgtgagccttttctgggtttttgctgttgctgctgttgtgtcttgcaggtctgtttgctgctaggcgctttgggtagtggctgctgtcatgatagcaga 42881767  T
Q  885 gttgctgttctgttcagctgctactggtgggga 917  Q
    |||||||||||||||||||||||||||||||||    
T  42881768 gttgctgttctgttcagctgctactggtgggga 42881800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 465 - 614
Target Start/End: Complemental strand, 2150777 - 2150628
Alignment:
Q  465 cccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatg 564  Q
    |||||| |||||||||||||||| |  |||| | | | ||||||| |||||||||| | | ||| |||||||||||||||||||||||||||||| ||||    
T  2150777 cccatactttatgggcacctaagggcccatagccgtacccattactcgcactttaattatgaaaagacaataaaaacatcacaattgaaataaaactatg 2150678  T
Q  565 gtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtattt 614  Q
    |||        |||||||||||||||||||||||||  ||||| ||||||    
T  2150677 gtctaaatattttcaaatcaactcataaaatagtacgaatcgtagtattt 2150628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 435 - 567
Target Start/End: Original strand, 19873073 - 19873204
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||| || | |||||| |||||||| |||||||||  |||||| | | |||||||| ||||||||||| | ||| |||||    
T  19873073 cctcgtgggcaacaacttt-agtgcccctccccatactttatgggtacctaagtgcccatacccgcacccattacctgcactttaactatgaaaagacaa 19873171  T
Q  535 taaaaacatcacaattgaaataaaattatggtc 567  Q
    ||||||||||||||||||||||||| |||||||    
T  19873172 taaaaacatcacaattgaaataaaactatggtc 19873204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 403 - 567
Target Start/End: Original strand, 48080010 - 48080173
Alignment:
Q  403 cccacacccgcatttgtaaaaaataattgtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaat 502  Q
    |||| |||| |||||||||||| ||   ||| ||||||| ||||||| ||| |||| |||| |||||||  |||||| |||||||||  |||||| | |     
T  48080010 cccatacccacatttgtaaaaattatccgtaccctcgtgggcaacaacttt-agtgcccttccccatatcctatgggtacctaagtgtccatacccgcac 48080108  T
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtc 567  Q
     ||||||||||||||||||| | ||| ||||||||||| |||||||||||||||||| |||||||    
T  48080109 tcattacccgcactttaactatgaaaagacaataaaaatatcacaattgaaataaaactatggtc 48080173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 567
Target Start/End: Complemental strand, 50508983 - 50508868
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattg 551  Q
    ||||||| |||||| ||||   |||||| || ||||||  |||||||| | ||| |||||||||||||||| | ||| ||||||||||||||||||||||    
T  50508983 tttagtgccctttctcataccctatgggaacttaagtgcccatacctgcacccactacccgcactttaactatgaaaagacaataaaaacatcacaattg 50508884  T
Q  552 aaataaaattatggtc 567  Q
    ||||||||||||||||    
T  50508883 aaataaaattatggtc 50508868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 503 - 567
Target Start/End: Original strand, 11671784 - 11671848
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtc 567  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| |||||||    
T  11671784 ccattacccgcactttaactatgaaaagacaataaaaacatcacaattgaaataaaactatggtc 11671848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 618 - 709
Target Start/End: Complemental strand, 30762123 - 30762032
Alignment:
Q  618 aaaaggttgtcgtggagttggagtttagctaggctgaaaattcaaccttgtttgttctacgagtggaggtggaatccaaagtggtgccttgg 709  Q
    |||||||| ||||||| |||||||||| | ||||||||||||||||| ||||||||||| || ||  |||||||||  ||||||||||||||    
T  30762123 aaaaggttatcgtggatttggagtttatcgaggctgaaaattcaaccgtgtttgttctatgaatgacggtggaatctgaagtggtgccttgg 30762032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 452 - 617
Target Start/End: Original strand, 35688298 - 35688465
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaaca--tcacaat 549  Q
    ||||||| |||| |||||||  ||||||||||||||||  |||||| | | |||||||||||| ||||||| | ||| ||||||||||| |   ||||||    
T  35688298 tttagtgcccttccccatatcctatgggcacctaagtgcccatacccgcacccattacccgcattttaactatgaaaagacaataaaaaaaacccacaat 35688397  T
Q  550 tgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    |||||||||| |||| |||       ||||||||||||||||||||| ||   ||||| |||||||||    
T  35688398 tgaaataaaactatgatccaaaaaatttcaaatcaactcataaaataatatgaatcgtagtatttagc 35688465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 474 - 545
Target Start/End: Original strand, 51055477 - 51055548
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatca 545  Q
    |||| |||||||||||  |||||||| |||||||| ||||||||||||| ||||||||||||||||||||||    
T  51055477 tatgagcacctaagtgcacatacctgcatccattatccgcactttaactataaaaggacaataaaaacatca 51055548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 474 - 599
Target Start/End: Original strand, 48583747 - 48583873
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaat-aaaaacatcacaattgaaataaaattatggtccnnnn 572  Q
    ||||||||| ||||||  |||||||| |  ||||||||||||||||||  | ||| |||||| ||||||| ||||||||||||||||||||| |||        
T  48583747 tatgggcacttaagtgcacatacctgcagtcattacccgcactttaaccatgaaaagacaataaaaaacaccacaattgaaataaaattatgatcctcaa 48583846  T
Q  573 nnnttcaaatcaactcataaaatagta 599  Q
       |||||||||||| |||||||||||    
T  48583847 aatttcaaatcaactaataaaatagta 48583873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 483 - 567
Target Start/End: Complemental strand, 5041134 - 5041050
Alignment:
Q  483 ctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtc 567  Q
    |||||||  |||||||| | |||||| ||||||||||||| | ||| || ||||||||||||||||||||||||||| |||||||    
T  5041134 ctaagtgcccatacctgcacccattatccgcactttaactatgaaaagataataaaaacatcacaattgaaataaaactatggtc 5041050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 435 - 564
Target Start/End: Original strand, 25467466 - 25467598
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactg----taaaagg 530  Q
    ||||||| ||||||| ||| |||| |||| ||||||| ||||||| | ||||||| ||||||| | | |||||||||||| |||||||     | |||      
T  25467466 cctcgtgggcaacaacttt-agtgcccttccccatatcttatgggtatctaagtgctcatacccgcacccattacccgcaatttaactaactatgaaaaa 25467564  T
Q  531 acaataaaaacatcacaattgaaataaaattatg 564  Q
    ||||||||||||||||||||||||||||||||||    
T  25467565 acaataaaaacatcacaattgaaataaaattatg 25467598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Complemental strand, 33558846 - 33558789
Alignment:
Q  507 tacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatg 564  Q
    |||||||||||||||| | ||| |||||||||||||||||||||||||||||| ||||    
T  33558846 tacccgcactttaactatgaaaagacaataaaaacatcacaattgaaataaaactatg 33558789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 458 - 599
Target Start/End: Complemental strand, 54444501 - 54444359
Alignment:
Q  458 gtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaac-atcacaattgaaata 556  Q
    ||||||| ||||||| |||| ||| ||||||| ||||| |   | |||||||| ||||||||||| | ||| |||||||||||  || || |||||||||    
T  54444501 gtccttttccatattctatgagcatctaagtgttcatatccacacccattaccagcactttaactatgaaaagacaataaaaaatattacgattgaaata 54444402  T
Q  557 aaattatggtccnnnnnnnttcaaatcaactcataaaatagta 599  Q
    ||| ||||||||       ||||||||||||||||||||||||    
T  54444401 aaactatggtccaagaattttcaaatcaactcataaaatagta 54444359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 507 - 596
Target Start/End: Original strand, 35203302 - 35203391
Alignment:
Q  507 tacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaata 596  Q
    |||||||||||||||| | ||| ||||||||||| |||||||||||||||||| |||||| |       ||||||||||||| |||||||    
T  35203302 tacccgcactttaactatgaaaagacaataaaaatatcacaattgaaataaaactatggttcaaattttttcaaatcaactcgtaaaata 35203391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 431 - 519
Target Start/End: Original strand, 49374769 - 49374856
Alignment:
Q  431 gtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcacttta 519  Q
    |||||||||||  |||||| ||||||||||||||||||||   ||||||||| |||||| ||||||| | | |||||||||||||||||    
T  49374769 gtatcctcgtggacaacaa-ttttagtgtcctttcccataccctatgggcacttaagtgctcatacccgcacccattacccgcacttta 49374856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 452 - 567
Target Start/End: Original strand, 12905611 - 12905726
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattg 551  Q
    |||||||||||| |||| | | |||||| |||||||||   ||||  | | ||||||| |||||||||||| | ||| ||||| ||||| ||||||||||    
T  12905611 tttagtgtccttccccaaactctatgggtacctaagtgtctatactcgcacccattactcgcactttaactatgaaatgacaacaaaaatatcacaattg 12905710  T
Q  552 aaataaaattatggtc 567  Q
    |||||||| |||||||    
T  12905711 aaataaaactatggtc 12905726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 475 - 599
Target Start/End: Original strand, 8340160 - 8340286
Alignment:
Q  475 atgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa--catcacaattgaaataaaattatggtccnnnn 572  Q
    |||||||||||||||  |||||| | | | |||||||||| ||||||| | ||| |||||||||||  || |||||||||||||||| |||| |||        
T  8340160 atgggcacctaagtgcccatacccgcacctattacccgcattttaactatgaaaagacaataaaaaaccaccacaattgaaataaaactatgatccaaaa 8340259  T
Q  573 nnnttcaaatcaactcataaaatagta 599  Q
       ||| ||||||||||||||||||||    
T  8340260 aatttcgaatcaactcataaaatagta 8340286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 505 - 567
Target Start/End: Original strand, 40563992 - 40564054
Alignment:
Q  505 attacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtc 567  Q
    |||||||||||||||||  | ||| || ||||||||||||||||||||||||||| |||||||    
T  40563992 attacccgcactttaacaatgaaaagaaaataaaaacatcacaattgaaataaaactatggtc 40564054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 435 - 617
Target Start/End: Original strand, 19454765 - 19454949
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgt-aaaaggaca 533  Q
    ||||||| ||||||| ||| |||  |||| |||||| | ||||||||| ||||||  |||| ||| | ||||||||| || ||||||| | |||| ||||    
T  19454765 cctcgtgggcaacaacttt-agtacccttccccatactctatgggcacttaagtgtccatatctgcacccattacccacattttaactatgaaaaagaca 19454863  T
Q  534 ataaaaacatc--acaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    ||||||| | |  |||||||||||||||||||| |||       ||||||||||||||||||||| ||   ||||| |||||||||    
T  19454864 ataaaaaaaacccacaattgaaataaaattatgatccaaaaaatttcaaatcaactcataaaataatatgaatcgtagtatttagc 19454949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 452 - 564
Target Start/End: Complemental strand, 42096854 - 42096741
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa-catcacaatt 550  Q
    ||||||| |||| ||||||   ||||||||| ||||||  |||||| | | ||||||||||||||||  || | ||| ||||||||||| ||||||||||    
T  42096854 tttagtgcccttccccataccctatgggcacttaagtgcccatacccgcacccattacccgcactttctctatgaaaagacaataaaaaacatcacaatt 42096755  T
Q  551 gaaataaaattatg 564  Q
    ||||||||| ||||    
T  42096754 gaaataaaactatg 42096741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 42880743 - 42880815
Alignment:
Q  192 ttggtattggaacttttcttctatccatggacaacttaggcaaatgcaaggaaatttcatgtctggttttcaga 265  Q
    |||||||||||| |||| |||||||||||||||||  ||||||| |||||||| ||||||| || |||||||||    
T  42880743 ttggtattggaattttt-ttctatccatggacaacggaggcaaaggcaaggaagtttcatgcctagttttcaga 42880815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 481 - 556
Target Start/End: Original strand, 7940356 - 7940431
Alignment:
Q  481 acctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaata 556  Q
    |||||||||  |||||| | ||||||||||||||||||| || | ||| || | ||||||||||||||||||||||    
T  7940356 acctaagtgcccatacccgcatccattacccgcactttagctatgaaaagatagtaaaaacatcacaattgaaata 7940431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 507 - 599
Target Start/End: Original strand, 14418284 - 14418376
Alignment:
Q  507 tacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagta 599  Q
    |||||||||||||||| | ||| || |||||||| |||||||||||| ||||||||| || |       ||||||||| ||||||||||||||    
T  14418284 tacccgcactttaactatgaaaagataataaaaatatcacaattgaattaaaattatagttcaaaaaatttcaaatcacctcataaaatagta 14418376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 501 - 568
Target Start/End: Complemental strand, 22845191 - 22845125
Alignment:
Q  501 atccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtcc 568  Q
    |||||||||| ||| ||||||| | ||| |||||||||||||||||| ||||||||||| ||||||||    
T  22845191 atccattacc-gcattttaactatgaaaagacaataaaaacatcacatttgaaataaaactatggtcc 22845125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 508 - 600
Target Start/End: Original strand, 33099698 - 33099790
Alignment:
Q  508 acccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtac 600  Q
    |||| |||||||||| | ||| ||||||||||| |||||||||||||||||| |||||| |       ||||||||||||||| |||| ||||    
T  33099698 accctcactttaactatgaaaagacaataaaaatatcacaattgaaataaaactatggttcaaaaaatttcaaatcaactcatcaaatggtac 33099790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 567
Target Start/End: Complemental strand, 23298366 - 23298324
Alignment:
Q  525 aaaaggacaataaaaacatcacaattgaaataaaattatggtc 567  Q
    |||| |||||||||||||||||||||||||||||| |||||||    
T  23298366 aaaaagacaataaaaacatcacaattgaaataaaactatggtc 23298324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 503 - 617
Target Start/End: Complemental strand, 30248115 - 30248000
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaa-aacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtaca 601  Q
    ||||||||||||||||  || | ||| ||||||||| || |||||||||||||||||| |||| |||       || ||||||||| ||||||||||||     
T  30248115 ccattacccgcactttctctatgaaaagacaataaataatatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaatagtacg 30248016  T
Q  602 catcgtggtatttagc 617  Q
     ||||| |||||||||    
T  30248015 aatcgtagtatttagc 30248000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 435 - 564
Target Start/End: Complemental strand, 45079333 - 45079204
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||| |||| ||||||   ||||||||| ||||||  |||||| | | ||||||||||||||||  |  | ||| |||||    
T  45079333 cctcgtgggcaacaacttt-agtgcccttccccataccctatgggcacttaagtgcccatacccgcacccattacccgcactttctcgatgaaaagacaa 45079235  T
Q  535 taaaaa-catcacaattgaaataaaattatg 564  Q
    |||||| ||||||||||||||||||| ||||    
T  45079234 taaaaaacatcacaattgaaataaaactatg 45079204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 564
Target Start/End: Complemental strand, 26787657 - 26787597
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatg 564  Q
    ||||||||| |||||||| | |||||| |||||||||||||||| |||||||||||| ||||    
T  26787657 ccattacccacactttaattataaaag-acaataaaaacatcaccattgaaataaaactatg 26787597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 476 - 568
Target Start/End: Original strand, 46819180 - 46819272
Alignment:
Q  476 tgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtcc 568  Q
    |||| ||||||||| |||||||   | | ||||||| ||||||| || | |||  | ||||||||||||||||||||||||||| ||||||||    
T  46819180 tgggtacctaagtgctcataccctcacctattacccacactttagctatgaaaaaagaataaaaacatcacaattgaaataaaactatggtcc 46819272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 559
Target Start/End: Complemental strand, 24987478 - 24987411
Alignment:
Q  492 catacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||| | |||||||||||||||||||||| |  ||  |||| ||||||||||||| ||||||||||    
T  24987478 catacccgcatccattacccgcactttaactatggaaaaacaaaaaaaacatcacaaatgaaataaaa 24987411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 568
Target Start/End: Complemental strand, 25630368 - 25630313
Alignment:
Q  513 cactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtcc 568  Q
    |||||||||| | |||  ||||||||||||||||||||||||||||  ||||||||    
T  25630368 cactttaactatgaaaaaacaataaaaacatcacaattgaaataaacctatggtcc 25630313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 564
Target Start/End: Original strand, 27064210 - 27064301
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaat-aaaaacatcacaattgaaataaaattatg 564  Q
    ||||||||||||||||  || ||| | | ||||||||| |||||||| | ||||| | |||| ||||||||||| |||||||||||| ||||    
T  27064210 tatgggcacctaagtgcccacacccgtacccattacccacactttaattataaaaaggcaataaaaaacatcaccattgaaataaaactatg 27064301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 452 - 519
Target Start/End: Complemental strand, 30964661 - 30964594
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcacttta 519  Q
    |||| |||||||||||||||| ||||| ||| |||||| ||||||||| | |||||| ||||| ||||    
T  30964661 tttaatgtcctttcccatattctatggacacttaagtgttcatacctgcacccattatccgcaattta 30964594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 452 - 519
Target Start/End: Complemental strand, 30980473 - 30980406
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcacttta 519  Q
    |||| |||||||||||||||| ||||| ||| |||||| ||||||||| | |||||| ||||| ||||    
T  30980473 tttaatgtcctttcccatattctatggacacttaagtgttcatacctgcacccattatccgcaattta 30980406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 617
Target Start/End: Complemental strand, 41410347 - 41410203
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa-catcacaattgaaataaaattatggtccnnnn 572  Q
    |||| |||||||||||  |||||| | |  |||||||| ||||||  || | ||| ||||||||||| ||||||||||||||||||| |||| |||        
T  41410347 tatgagcacctaagtgcccatacccgcacgcattacccacactttctctatgaaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaa 41410248  T
Q  573 nnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
       || ||||||||| |||||||||||   ||||| |||||||||    
T  41410247 ttatttaaatcaactaataaaatagtatgaatcgtagtatttagc 41410203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 169
Target Start/End: Original strand, 42882430 - 42882593
Alignment:
Q  7 actaatggtatgtttgtttcgtaatgaaatattacttttgaggagaaattattgtttgtagcttgttaaaaccacaacaaattagtgttggaacgcatga 106  Q
    ||||||| |||||||||||||  | | |||||| | |||||| ||||  || | || |||||||||||||||| |   ||||| |||||||||| ||| |    
T  42882430 actaatgctatgtttgtttcgcgagggaatattgcgtttgagtagaagctactattggtagcttgttaaaacctcggaaaattggtgttggaacacataa 42882529  T
Q  107 a-tccttctttcaccgtcaaaccaaggcgtttattagtctatgatgcacaaacaagatagtgtt 169  Q
    | || |||||| |||| |||||||||  |  ||| |||||||| |||||| | |||||||||||    
T  42882530 aatctttctttgaccgccaaaccaagcagcctataagtctatggtgcacatataagatagtgtt 42882593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 503 - 613
Target Start/End: Complemental strand, 2013115 - 2013004
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaac-atcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtaca 601  Q
    |||||| || |||||||| | ||||| |||||||||||  |||||||||||||||||| |||| |||       || ||| ||||||||||||||||| |    
T  2013115 ccattatccacactttaattataaaaagacaataaaaaatatcacaattgaaataaaactatgatccaattttttttaaagcaactcataaaatagtaga 2013016  T
Q  602 catcgtggtatt 613  Q
     ||||| |||||    
T  2013015 aatcgtagtatt 2013004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 474 - 559
Target Start/End: Original strand, 6408592 - 6408678
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggac-aataaaaacatcacaattgaaataaaa 559  Q
    |||||| |||||||||  |||||| | | |||||||||||||||||||| | |||  || || ||||||||||||| ||||||||||    
T  6408592 tatgggtacctaagtgcccatacccgcacccattacccgcactttaactatgaaaaaacaaaaaaaaacatcacaaatgaaataaaa 6408678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 481 - 559
Target Start/End: Original strand, 19618710 - 19618788
Alignment:
Q  481 acctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||||||  |||||| | | |||||||||||||||||||| | | |  |||| ||||||||||||| ||||||||||    
T  19618710 acctaagtgcccatacccgcacccattacccgcactttaactatgataaaacaaaaaaaacatcacaaatgaaataaaa 19618788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 517 - 567
Target Start/End: Original strand, 39952573 - 39952623
Alignment:
Q  517 ttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtc 567  Q
    |||||| | ||| |||| ||||||||||||||||||||||||| |||||||    
T  39952573 ttaactatgaaaagacagtaaaaacatcacaattgaaataaaactatggtc 39952623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 4e-28; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 435 - 567
Target Start/End: Original strand, 41983233 - 41983364
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||||| ||||| ||  | |||||| ||||||||| ||||||||| | |||||||||||||||||||| | ||| |||||    
T  41983233 cctcgtgggcaacaacttt-agtgtcatttcctatgctctatgggtacctaagtgctcatacctgcacccattacccgcactttaactatgaaaagacaa 41983331  T
Q  535 taaaaacatcacaattgaaataaaattatggtc 567  Q
    ||||||||||||||||||||||||| |||||||    
T  41983332 taaaaacatcacaattgaaataaaactatggtc 41983364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 452 - 561
Target Start/End: Complemental strand, 22632351 - 22632242
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattg 551  Q
    ||||||| | || ||||||  ||||||| ||||||||| ||||||||| |  ||||||||||||||||||| | ||| ||||||||||||||||||||||    
T  22632351 tttagtgccattccccataccttatgggtacctaagtgatcatacctgcactcattacccgcactttaactatgaaaagacaataaaaacatcacaattg 22632252  T
Q  552 aaataaaatt 561  Q
    ||||||||||    
T  22632251 aaataaaatt 22632242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 435 - 564
Target Start/End: Original strand, 7978016 - 7978144
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||| |||| ||||||   |||||| | ||||||| ||||||| | | |||||||||||||||||||| | |||  ||||    
T  7978016 cctcgtgggcaacaacttt-agtgcccttccccataccctatgggtatctaagtgctcatacccgcacccattacccgcactttaactatgaaaaaacaa 7978114  T
Q  535 taaaaacatcacaattgaaataaaattatg 564  Q
    ||||||||||||||||||||||||||||||    
T  7978115 taaaaacatcacaattgaaataaaattatg 7978144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 567
Target Start/End: Original strand, 29455776 - 29455907
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||| |||| ||||||  ||||||| | |||||||  |||||| | | ||||||||| |||||||||| | ||| || ||    
T  29455776 cctcgtgggcaacaacttt-agtgcccttccccataccttatgggtatctaagtgcccatacccgcacccattacccacactttaactatgaaaagataa 29455874  T
Q  535 taaaaacatcacaattgaaataaaattatggtc 567  Q
    ||||||||||||||||||||||||| |||||||    
T  29455875 taaaaacatcacaattgaaataaaactatggtc 29455907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 430 - 564
Target Start/End: Complemental strand, 16620441 - 16620307
Alignment:
Q  430 tgtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaag 529  Q
    ||||| |||||| ||||||| ||| |||||||||  ||||||||||||| |||||||||| |||||| || | |||||| || ||||||| |  | |||     
T  16620441 tgtattctcgtgggcaacaacttt-agtgtccttctccatattttatggacacctaagtgctcatacttgtacccattatccacactttagcaatgaaaa 16620343  T
Q  530 gacaataaaaa-catcacaattgaaataaaattatg 564  Q
    ||||||||||| ||||||||||||||||||| ||||    
T  16620342 gacaataaaaagcatcacaattgaaataaaactatg 16620307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 503 - 599
Target Start/End: Complemental strand, 24489128 - 24489032
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagta 599  Q
    ||||||||| |||||||||| | ||| ||||||||||| |||||||||||||||||| |||||| |       ||||||||||||||||||||||||    
T  24489128 ccattacccacactttaactatgaaaagacaataaaaatatcacaattgaaataaaactatggttcaaaaattttcaaatcaactcataaaatagta 24489032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 430 - 615
Target Start/End: Original strand, 16186748 - 16186933
Alignment:
Q  430 tgtatcctcgtgtgcaacaaattttagtgtcctttcc-catattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaa 528  Q
    |||| ||||||| ||||||| ||| ||| |||||||| |||| |||||||| || ||||||  |||||  | | ||||||||||||||||||| || |||    
T  16186748 tgtaccctcgtgagcaacaacttt-agt-tcctttccacatactttatgggtacttaagtgcccatacacgcacccattacccgcactttaaccgtgaaa 16186845  T
Q  529 ggacaat-aaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtattta 615  Q
     |||||| ||||||| || |||||||||||||||||| |||       |||||||||||| ||||||||||| | ||||| |||||||    
T  16186846 agacaataaaaaacaccataattgaaataaaattatgatccaaaaaatttcaaatcaactaataaaatagtataaatcgtagtattta 16186933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 507 - 567
Target Start/End: Complemental strand, 6224897 - 6224837
Alignment:
Q  507 tacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtc 567  Q
    |||||||||||||||| | ||| |||||||||||||||||||||||||||||| |||||||    
T  6224897 tacccgcactttaactatgaaaagacaataaaaacatcacaattgaaataaaactatggtc 6224837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 503 - 567
Target Start/End: Original strand, 18595413 - 18595477
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtc 567  Q
    |||||| ||||||||||||| |||||  |||||||||| ||||||||||||||||||||||||||    
T  18595413 ccattatccgcactttaactataaaaaaacaataaaaatatcacaattgaaataaaattatggtc 18595477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 503 - 567
Target Start/End: Complemental strand, 31149750 - 31149686
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtc 567  Q
    |||||| ||||||||||||| | ||| |||||||||||||||||||||||||||||| |||||||    
T  31149750 ccattatccgcactttaactatgaaaagacaataaaaacatcacaattgaaataaaactatggtc 31149686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 452 - 599
Target Start/End: Complemental strand, 4902047 - 4901901
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa--catcacaat 549  Q
    ||||||| |||| ||||||   ||||||||||||||||  |||||| | | ||||||||||||   ||||| | ||| |||||||||||  |||||||||    
T  4902047 tttagtgcccttccccataccctatgggcacctaagtgcccatacccgcacccattacccgca---taactatgaaaagacaataaaaaagcatcacaat 4901951  T
Q  550 tgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagta 599  Q
    |||||||||| |||| |||       ||||||||||||||||||||||||    
T  4901950 tgaaataaaaatatgatccaaaaaatttcaaatcaactcataaaatagta 4901901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 435 - 617
Target Start/End: Complemental strand, 639484 - 639302
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||||| || ||||||   |||||| || ||||||  |||||| | ||| ||||||||||| |||||  | ||| || ||    
T  639484 cctcgtgggcaacaacttt-agtgtctttccccataccctatgggtacttaagtgcccatacccgcatcaattacccgcacattaaccatgaaaagaaaa 639386  T
Q  535 taaaaa-catcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    |||||| || ||||||||||||||||||||| |||       |||||||||||| ||||||||||| | ||||| |||||||||    
T  639385 taaaaaacaccacaattgaaataaaattatgatccaaaaaatttcaaatcaactaataaaatagtataaatcgtagtatttagc 639302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 503 - 564
Target Start/End: Original strand, 14087715 - 14087776
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatg 564  Q
    |||||| ||||||||||||| | |||  ||||||||||||||||||||||||||||||||||    
T  14087715 ccattatccgcactttaactatgaaaaaacaataaaaacatcacaattgaaataaaattatg 14087776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 505 - 621
Target Start/End: Complemental strand, 23141677 - 23141560
Alignment:
Q  505 attacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtac-aca 603  Q
    |||||||||| ||||||| | ||| ||||||||||| |||||||||||||||||||| |||| |       |||||||| |||||||||| ||||| | |    
T  23141677 attacccgcattttaactatgaaaagacaataaaaatatcacaattgaaataaaattgtggttcacaatttttcaaatcgactcataaaaaagtacaaaa 23141578  T
Q  604 tcgtggtatttagcaaaa 621  Q
    |||| ||||||| |||||    
T  23141577 tcgtagtatttaacaaaa 23141560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 452 - 568
Target Start/End: Complemental strand, 36470557 - 36470441
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattg 551  Q
    ||||||| |||| |||||| | |||||| |||||||||  |||||| | | |||||||| |||||||| || | |||    |||||||||||||||||||    
T  36470557 tttagtgcccttccccatactctatgggtacctaagtgtccatacccgcacccattaccagcactttagctatgaaaaaggaataaaaacatcacaattg 36470458  T
Q  552 aaataaaattatggtcc 568  Q
    |||||||| ||||||||    
T  36470457 aaataaaactatggtcc 36470441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 474 - 559
Target Start/End: Original strand, 4572291 - 4572376
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||| | ||||||| ||||||  | |||||||| ||||||||||||| | ||| ||||| ||||||||||||| ||||||||||    
T  4572291 tatgggtatctaagtgctcatactcgcatccattatccgcactttaactatgaaaagacaaaaaaaacatcacaaatgaaataaaa 4572376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 452 - 617
Target Start/End: Complemental strand, 19254594 - 19254428
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa-catcacaatt 550  Q
    ||||||| |||| ||||||   |||| |||| ||||||  |||||| | | ||||||||||||||||  || | ||| ||||||||||| ||||||||||    
T  19254594 tttagtgcccttccccataccctatgagcacttaagtgcccatacccgcacccattacccgcactttctctatgaaaagacaataaaaaacatcacaatt 19254495  T
Q  551 gaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    ||||||||| |||| |||       || ||||||||| |||||||||||   ||||| |||||||||    
T  19254494 gaaataaaactatgatccaaaattatttaaatcaactaataaaatagtatgaatcgtagtatttagc 19254428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 449 - 617
Target Start/End: Original strand, 38309774 - 38309943
Alignment:
Q  449 aattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaa-acatcaca 547  Q
    |||||||||  |||||||||||   ||||||||| |||||| ||||||| | |  ||||| |||||||||  || | ||| ||||| |||| ||||||||    
T  38309774 aattttagtaccctttcccataccctatgggcacttaagtgctcatacccgcacacattatccgcactttctctatgaaaagacaacaaaaaacatcaca 38309873  T
Q  548 attgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    |||||||||||| |||| |||       || ||||||||| ||||||||||||  |||||  ||||||||    
T  38309874 attgaaataaaactatgatccgaaattatttaaatcaactaataaaatagtacgaatcgtaatatttagc 38309943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 502 - 615
Target Start/End: Complemental strand, 5657777 - 5657662
Alignment:
Q  502 tccattacccgcactttaactgtaaaaggacaata--aaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagta 599  Q
    ||||||| ||||||||||| | ||||| |||||||  |||||||||| |||||||||||| |||| |||       || ||| |||||||||||||||||    
T  5657777 tccattatccgcactttaattataaaaagacaataaaaaaacatcactattgaaataaaactatgatccaattttttttaaagcaactcataaaatagta 5657678  T
Q  600 cacatcgtggtattta 615  Q
     | ||||| |||||||    
T  5657677 gaaatcgtagtattta 5657662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 474 - 595
Target Start/End: Complemental strand, 15674064 - 15673941
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa--catcacaattgaaataaaattatggtccnnn 571  Q
    ||||||||||||||||  |||||| | | |||||| ||||| ||||||| | ||| |||||||||||  || ||||| ||||||| ||||||| |||       
T  15674064 tatgggcacctaagtgtccatacccgcacccattatccgcaatttaactctgaaaagacaataaaaaagcaccacaactgaaatacaattatgatccaga 15673965  T
Q  572 nnnnttcaaatcaactcataaaat 595  Q
        ||||||||||||||||||||    
T  15673964 aaatttcaaatcaactcataaaat 15673941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 474 - 564
Target Start/End: Complemental strand, 34718868 - 34718777
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa-catcacaattgaaataaaattatg 564  Q
    ||||||||| |||||| |||||||   | ||||||||||||||||  || | ||| ||||||||||| ||||||||||||||||||| ||||    
T  34718868 tatgggcacttaagtgctcatacccccacccattacccgcactttctctatgaaaagacaataaaaaacatcacaattgaaataaaactatg 34718777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 505 - 617
Target Start/End: Original strand, 36323077 - 36323188
Alignment:
Q  505 attacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacat 604  Q
    ||||| |||||||||||| | || |||||||||||||||||| |||| ||||||| ||||||||       ||||||||||||||| ||||| ||   ||    
T  36323077 attactcgcactttaactatgaa-ggacaataaaaacatcacgattggaataaaactatggtccaaaatttttcaaatcaactcatcaaataatatgaat 36323175  T
Q  605 cgtggtatttagc 617  Q
    ||| |||||||||    
T  36323176 cgtagtatttagc 36323188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 474 - 564
Target Start/End: Complemental strand, 41692552 - 41692461
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa-catcacaattgaaataaaattatg 564  Q
    ||||||||| |||||| |||||||   | ||||||||||||||||  || | ||| ||||||||||| ||||||||||||||||||| ||||    
T  41692552 tatgggcacttaagtgctcatacccccacccattacccgcactttctctatgaaaagacaataaaaaacatcacaattgaaataaaactatg 41692461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 481 - 559
Target Start/End: Original strand, 14088298 - 14088376
Alignment:
Q  481 acctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||||||  |||||| | | |||||||||||||||||||| | |||  |||| ||||||||||||| ||||||||||    
T  14088298 acctaagtgcccatacccgtacccattacccgcactttaactatgaaaaaacaaaaaaaacatcacaaatgaaataaaa 14088376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 452 - 519
Target Start/End: Original strand, 32302390 - 32302457
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcacttta 519  Q
    |||||||||||| ||||||  |||||||||| ||||||  |||||| | | |||||||||||||||||    
T  32302390 tttagtgtccttccccataccttatgggcacttaagtgcccatacccgcacccattacccgcacttta 32302457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 595
Target Start/End: Complemental strand, 33347160 - 33347037
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa--catcacaattgaaataaaattatggtccnnn 571  Q
    ||||||||||||||||  |||||| | | |||||| | ||| ||||||| | ||| |||||||||||  || ||||| ||||||| ||||||| |||       
T  33347160 tatgggcacctaagtgtccatacccgcacccattatctgcaatttaactctgaaaagacaataaaaaagcaccacaactgaaatacaattatgatccaga 33347061  T
Q  572 nnnnttcaaatcaactcataaaat 595  Q
        ||||||||||||||||||||    
T  33347060 aaatttcaaatcaactcataaaat 33347037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 564
Target Start/End: Original strand, 35853523 - 35853636
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa-catcacaatt 550  Q
    |||||||||||| ||||||   ||||||||| ||||||  |||||| | | ||||||||||||||||| |  | ||| || |||||||| || |||| ||    
T  35853523 tttagtgtccttccccataccctatgggcacttaagtgcccatacccgcacccattacccgcactttagccatgaaaagataataaaaatcaccacactt 35853622  T
Q  551 gaaataaaattatg 564  Q
    ||||||||| ||||    
T  35853623 gaaataaaactatg 35853636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 3e-26; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 408 - 617
Target Start/End: Original strand, 2959899 - 2960108
Alignment:
Q  408 acccgcatttgtaaaaaataattgtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccatt 507  Q
    ||||| |||||||||||||    ||||||||||| |||| || ||| |||| |||| |||||    ||||||||||||||||  ||||||   ||| |||    
T  2959899 acccgtatttgtaaaaaatgtccgtatcctcgtgggcaataacttt-agtgcccttccccattccgtatgggcacctaagtgtccatacccacatctatt 2959997  T
Q  508 acccgcactttaactgtaaaaggacaat-aaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcg 606  Q
    ||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||||| |||       |||||||||||||||||||||||||  || |    
T  2959998 acccgcactttaactatgaaatgacaataaaaaacatcacaattgaaataaaattatgatccaaaaaatttcaaatcaactcataaaatagtacgaattg 2960097  T
Q  607 tggtatttagc 617  Q
    | |||||||||    
T  2960098 tagtatttagc 2960108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 403 - 567
Target Start/End: Complemental strand, 43702569 - 43702406
Alignment:
Q  403 cccacacccgcatttgtaaaaaataattgtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaat 502  Q
    |||| |||| |||||||||||| || | ||| ||||||| | ||||| ||| ||||  ||| ||||||   |||||| |||||||||  |||||| | ||    
T  43702569 cccatacccacatttgtaaaaattattcgtaccctcgtgggtaacaacttt-agtgctcttccccataccctatgggtacctaagtgcccatacccgcat 43702471  T
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtc 567  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| |||||||    
T  43702470 ccattacccgcactttaactatgaaaagacaataaaaacatcacaattgaaataaaactatggtc 43702406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 435 - 617
Target Start/End: Original strand, 44300704 - 44300886
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||| |||| ||||||| |||||||||| ||||||  |||||||| | || |||||||||||||  || | ||| |||||    
T  44300704 cctcgtgggcaacaacttt-agtgcccttccccatatcttatgggcacttaagtgcccatacctgcacccgttacccgcactttctctatgaaaagacaa 44300802  T
Q  535 t-aaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    | |||||||||||||||||||||||| |||| |||       || ||||||||| ||||||||||||  ||||| |||||||||    
T  44300803 taaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaatagtacgaatcgtagtatttagc 44300886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 452 - 564
Target Start/End: Original strand, 43224325 - 43224437
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattg 551  Q
    ||||||| |||| ||||||   |||||| | |||||||  |||||||| | |||||||||||||||||||| | |||  |||||||||||||||||||||    
T  43224325 tttagtgcccttccccataccctatgggtatctaagtgcccatacctgcacccattacccgcactttaactatgaaaaaacaataaaaacatcacaattg 43224424  T
Q  552 aaataaaattatg 564  Q
    |||||||||||||    
T  43224425 aaataaaattatg 43224437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 452 - 564
Target Start/End: Complemental strand, 36074231 - 36074118
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaat-aaaaacatcacaatt 550  Q
    ||||||| |||| ||||||   ||||||||||||||||  |||||| | | |||||||||||||||||| | ||||  |||||| |||||||||||||||    
T  36074231 tttagtgcccttccccataccctatgggcacctaagtgcccatacccgtacccattacccgcactttaattataaatagacaattaaaaacatcacaatt 36074132  T
Q  551 gaaataaaattatg 564  Q
    ||||||||||||||    
T  36074131 gaaataaaattatg 36074118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 410 - 559
Target Start/End: Complemental strand, 5924218 - 5924068
Alignment:
Q  410 ccgcatttgtaaaaaataattgtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattac 509  Q
    |||| |||||||||||||   ||| ||||||| | ||||| ||| |||| |||| ||||||   | ||||||||||||||  |||||||| | |||||||    
T  5924218 ccgcgtttgtaaaaaatacccgtaccctcgtgggtaacaacttt-agtgcccttccccataccctgtgggcacctaagtgtccatacctgcacccattac 5924120  T
Q  510 ccgcactttaactgtaaaaggacaataaaaa--catcacaattgaaataaaa 559  Q
    ||||||||||||| | ||| |||||||||||  |||||||||||||||||||    
T  5924119 ccgcactttaactatgaaaagacaataaaaaagcatcacaattgaaataaaa 5924068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 431 - 601
Target Start/End: Complemental strand, 38470046 - 38469876
Alignment:
Q  431 gtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaagg 530  Q
    ||||||||||| ||||||| |||||||  |||| ||||||    |||||||| ||||||  |||||| | | ||||||||||||||||||||||||||      
T  38470046 gtatcctcgtgggcaacaa-ttttagtacccttccccatacccaatgggcacttaagtgcccatacccgcacccattacccgcactttaactgtaaaaat 38469948  T
Q  531 acaat-aaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtaca 601  Q
    ||||| ||||||| ||||||| |||||||| |||  |||       |||||||||||| |||||||||||||    
T  38469947 acaataaaaaacaccacaattaaaataaaactataatccataaaatttcaaatcaacttataaaatagtaca 38469876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 507 - 567
Target Start/End: Original strand, 9477708 - 9477768
Alignment:
Q  507 tacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtc 567  Q
    |||||||||||||||| | ||| |||||||||||||||||||||||||||||| |||||||    
T  9477708 tacccgcactttaactatgaaaagacaataaaaacatcacaattgaaataaaactatggtc 9477768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 568
Target Start/End: Complemental strand, 3551611 - 3551524
Alignment:
Q  481 acctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtcc 568  Q
    |||||||||  |||||| | ||||||||||| |||||||||| | ||| |||||| |||||||||||||||||||| || ||||||||    
T  3551611 acctaagtgtccatacccgtatccattacccacactttaactatgaaaagacaatgaaaacatcacaattgaaatagaactatggtcc 3551524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 474 - 617
Target Start/End: Complemental strand, 28067356 - 28067212
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa-catcacaattgaaataaaattatggtccnnnn 572  Q
    |||||| || ||||||  |||||||| | |||||||| ||||||||||  | ||| ||||||||||| || ||||||||||||||||||||| |||        
T  28067356 tatgggtacttaagtgcccatacctgcacccattacctgcactttaaccatgaaaagacaataaaaaacaccacaattgaaataaaattatgatccaaaa 28067257  T
Q  573 nnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
       |||||||||||| ||||||||||| | || || |||||||||    
T  28067256 aatttcaaatcaactaataaaatagtataaattgtagtatttagc 28067212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 474 - 616
Target Start/End: Original strand, 30391577 - 30391720
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaat-aaaaacatcacaattgaaataaaattatggtccnnnn 572  Q
    ||||||||| ||||||  |||||| | |||||||| ||||||||||||  | ||| |||||| ||||||| ||||||||||||||||  ||| |||        
T  30391577 tatgggcacttaagtgcccatacccgcatccattatccgcactttaaccatgaaaagacaataaaaaacagcacaattgaaataaaaccatgatccaaaa 30391676  T
Q  573 nnnttcaaatcaactcataaaatagtacacatcgtggtatttag 616  Q
       ||||||||||||||||||||||||   ||||| ||||||||    
T  30391677 aatttcaaatcaactcataaaatagtatgaatcgtagtatttag 30391720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 452 - 617
Target Start/End: Complemental strand, 1876150 - 1875982
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaaca---tcacaa 548  Q
    ||||||| |||| ||||||   ||||||||||||||||  |||||| | | |||||||||||| ||||||| | ||| ||||||||||| |    | |||    
T  1876150 tttagtgcccttccccataccctatgggcacctaagtgcccatacccgcacccattacccgcattttaactatgaaaagacaataaaaaaaaacccgcaa 1876051  T
Q  549 ttgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    |||||||||||||||| |||       ||||||||||||||||||||| ||   ||||| |||||||||    
T  1876050 ttgaaataaaattatgatccaaaaaatttcaaatcaactcataaaataatatcaatcgtagtatttagc 1875982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 474 - 558
Target Start/End: Complemental strand, 30738719 - 30738635
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaa 558  Q
    |||||| |||||||||  ||||||   | |||||||| ||||||||||| | ||| |||||||||||||||||||||||||||||    
T  30738719 tatgggtacctaagtgcccatacccacacccattacctgcactttaactatgaaaagacaataaaaacatcacaattgaaataaa 30738635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 452 - 616
Target Start/End: Complemental strand, 40789638 - 40789473
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa-catcacaatt 550  Q
    ||||||| |||||||||||   ||||||||| ||||||  |||||| | |  |||||||||||||||  || | |||  |||||||||| ||||||||||    
T  40789638 tttagtgccctttcccataccctatgggcacttaagtgcccatacccgcactcattacccgcactttctctatgaaaaaacaataaaaaacatcacaatt 40789539  T
Q  551 gaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttag 616  Q
    ||||||||| |||| |||       || ||||||||| ||||||||||||| |||||  |||||||    
T  40789538 gaaataaaactatgatccaaaattatttaaatcaactaataaaatagtacaaatcgtaatatttag 40789473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 474 - 599
Target Start/End: Original strand, 45112223 - 45112350
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaat--aaaaacatcacaattgaaataaaattatggtccnnn 571  Q
    |||||||||||||||| ||||||| | | |||||||||| | ||||||| | ||| ||||||  |||| || ||||| ||||||| ||||||| |||       
T  45112223 tatgggcacctaagtgctcatacccgcacccattacccgtagtttaactctgaaaagacaatgaaaaagcaccacaactgaaatacaattatgatccata 45112322  T
Q  572 nnnnttcaaatcaactcataaaatagta 599  Q
        ||||||||||||||||||||||||    
T  45112323 aaatttcaaatcaactcataaaatagta 45112350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 503 - 598
Target Start/End: Original strand, 16278487 - 16278582
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagt 598  Q
    ||||||||| |||||||| | ||||| ||||||||||||||||||||||| |||||| |||| |||       || ||| ||||||||||||||||    
T  16278487 ccattacccacactttaattataaaaagacaataaaaacatcacaattgatataaaactatgatccaattttttttaaagcaactcataaaatagt 16278582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 466 - 564
Target Start/End: Complemental strand, 38398525 - 38398427
Alignment:
Q  466 ccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatg 564  Q
    ||||| ||||| | ||||||| ||  |||||||| |||| |||||  |||||||||| | ||| |||||||||||||| ||||||||||||||| ||||    
T  38398525 ccatactttattgacacctaactgtccatacctgcatccgttacctacactttaactatgaaaagacaataaaaacattacaattgaaataaaactatg 38398427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 435 - 617
Target Start/End: Complemental strand, 40342439 - 40342257
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||| |||| ||||||   ||| ||||||||||||  ||||||   |||||||||||||| ||||||| | ||| |||||    
T  40342439 cctcgtgggcaacaacttt-agtgcccttccccataccctataggcacctaagtgcccatacccccatccattacccgcattttaactatgaaaagacaa 40342341  T
Q  535 taaaaaca-tcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    |||||| |  |||||||||||||||| |||| |||       |||||||||||| |||||||| ||   ||||| |||||||||    
T  40342340 taaaaaaacccacaattgaaataaaactatgatccaaaaaatttcaaatcaactaataaaataatatgaatcgtagtatttagc 40342257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 474 - 559
Target Start/End: Original strand, 19805067 - 19805152
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||| ||||||||| ||||||| | | |||||||||||||||||||| | |||  |||| ||||| ||||||| ||||||||||    
T  19805067 tatgggtacctaagtgctcatacccgcacccattacccgcactttaactatgaaaaaacaaaaaaaatatcacaaatgaaataaaa 19805152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 503 - 564
Target Start/End: Original strand, 42284563 - 42284624
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatg 564  Q
    |||||| || |||||||||| | ||| |||||||||||||||||||||||||||||| ||||    
T  42284563 ccattatccacactttaactatgaaaagacaataaaaacatcacaattgaaataaaactatg 42284624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 492 - 564
Target Start/End: Complemental strand, 38401041 - 38400969
Alignment:
Q  492 catacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatg 564  Q
    |||||||| |||| |||||  |||||||||| | ||| |||||||||||||| ||||||||||||||| ||||    
T  38401041 catacctgcatccgttacctacactttaactatgaaaagacaataaaaacattacaattgaaataaaactatg 38400969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 435 - 599
Target Start/End: Complemental strand, 48558807 - 48558643
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||| |||| ||||||   ||||| ||| ||||||  |||| | | |||||||||||||||||||||  | ||| |||||    
T  48558807 cctcgtgggcaacaacttt-agtgcccttccccataccctatggccacttaagtgtccatatccgcatccattacccgcactttaaccatgaaaagacaa 48558709  T
Q  535 ta-aaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagta 599  Q
    || |||||| |||| |||||||||||  ||| |||       ||||||||||||||||||||||||    
T  48558708 taaaaaacagcacagttgaaataaaaccatgatccaaaaaatttcaaatcaactcataaaatagta 48558643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 474 - 564
Target Start/End: Complemental strand, 17172304 - 17172213
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa-catcacaattgaaataaaattatg 564  Q
    ||||||||| |||||| |||||||   | ||||||||||||||||  || | ||| ||||||||||| ||||||||||||||||||| ||||    
T  17172304 tatgggcacttaagtgctcatacccccacccattacccgcactttctctatgaaaagacaataaaaaacatcacaattgaaataaaactatg 17172213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 435 - 595
Target Start/End: Original strand, 36072596 - 36072757
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||| |||| ||||||   ||||||||||||||||  |||||| | | | |||||||||| ||||||| | ||| |||||    
T  36072596 cctcgtgggcaacaacttt-agtgcccttccccataccctatgggcacctaagtgcccatacccgcaccaattacccgcaatttaactctgaaaagacaa 36072694  T
Q  535 taaaaa--catcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaat 595  Q
    ||||||  |||||||| | ||||| ||||||| |||       |||| |||||||||||||||    
T  36072695 taaaaaagcatcacaactaaaatacaattatgatcctgaaaatttcacatcaactcataaaat 36072757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 452 - 599
Target Start/End: Original strand, 11244031 - 11244180
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaa-acatcacaatt 550  Q
    ||||||| |||| |||||||  |||||| ||||||||   |||||| | | |||||| |  || ||||||| | ||| |||||||||| | |||||||||    
T  11244031 tttagtgcccttccccatatcctatgggtacctaagtacccatacccgcacccattatcaacattttaactatgaaaagacaataaaatatatcacaatt 11244130  T
Q  551 gaaa-taaaattatggtccnnnnnnnttcaaatcaactcataaaatagta 599  Q
    |||| ||||| ||||||||       ||||||||||||||||||||||||    
T  11244131 gaaaataaaactatggtcccaaaattttcaaatcaactcataaaatagta 11244180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 486 - 566
Target Start/End: Complemental strand, 25309586 - 25309506
Alignment:
Q  486 agtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggt 566  Q
    |||| ||||||||| | ||| ||||||||||||||||   | | ||||||||||| |||||||| ||||||||| ||||||    
T  25309586 agtgttcatacctgcacccactacccgcactttaactacgagaagacaataaaaatatcacaatggaaataaaactatggt 25309506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 507 - 567
Target Start/End: Complemental strand, 33067533 - 33067473
Alignment:
Q  507 tacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtc 567  Q
    ||||||||||||| |  | ||| ||||||||||| |||||||||||||||||| |||||||    
T  33067533 tacccgcactttagcaatgaaaagacaataaaaatatcacaattgaaataaaactatggtc 33067473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 513 - 559
Target Start/End: Original strand, 43218675 - 43218721
Alignment:
Q  513 cactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||||||| | ||| ||||||||||| ||||||||||||||||||    
T  43218675 cactttaactatgaaaagacaataaaaatatcacaattgaaataaaa 43218721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 712
Target Start/End: Complemental strand, 18319969 - 18319880
Alignment:
Q  623 gttgtcgtggagttggagtttagctaggctgaaaattcaaccttgtttgttctacgagtggaggtggaatccaaagtggtgccttggtgt 712  Q
    |||||||||||  ||||| ||||| ||| |||| ||||| || ||||||||||  || ||||| |||||||| | |||||| ||||||||    
T  18319969 gttgtcgtggaagtggagcttagcgaggttgaagattcagccatgtttgttctttgaatggagatggaatccgaggtggtgtcttggtgt 18319880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 559
Target Start/End: Original strand, 21153261 - 21153314
Alignment:
Q  507 tacccgcactttaactgtaaaaggacaat-aaaaacatcacaattgaaataaaa 559  Q
    |||||||||||||||  ||||| |||||| ||||||| ||||||||||||||||    
T  21153261 tacccgcactttaaccataaaaagacaataaaaaacaccacaattgaaataaaa 21153314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 474 - 616
Target Start/End: Original strand, 610732 - 610874
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnnnn 573  Q
    |||||| || ||||||  |||||| | | |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||         
T  610732 tatgggtacttaagtgcacatacccgcacccattacccgcactttaactatgaaaagacaataaaaacatcacaattgaaataaaattatggtccaaatt 610831  T
Q  574 nnttcaaatcaactcataaaatagtacacatcgtggtatttag 616  Q
      || |||| ||||||||||| |||||| ||||| ||||||||    
T  610832 ttttaaaattaactcataaaagagtacaaatcgtagtatttag 610874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 431 - 567
Target Start/End: Original strand, 945460 - 945595
Alignment:
Q  431 gtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaagg 530  Q
    ||||||||||| ||||||| ||| |||| |||| |||||||  |||||| | |||||||  |||||| | | |||||||||||||||||| | ||||| |    
T  945460 gtatcctcgtgggcaacaacttt-agtgcccttccccatatcctatgggtatctaagtgcccatacccgcacccattacccgcactttaattataaaaag 945558  T
Q  531 acaataaaaacatcacaattgaaataaaattatggtc 567  Q
    ||||||||||||||||||||||||||||| |||||||    
T  945559 acaataaaaacatcacaattgaaataaaactatggtc 945595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 474 - 599
Target Start/End: Complemental strand, 29512298 - 29512173
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnnnn 573  Q
    |||||| |||||||||  |||| ||| |||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| ||||||||         
T  29512298 tatgggtacctaagtgcacatatctgcatccattacccgcactttaactatgaaaagacaataaaaacatcacaattgaaataaaactatggtccaattt 29512199  T
Q  574 nnttcaaatcaactcataaaatagta 599  Q
      || |||| ||||||||||||||||    
T  29512198 ttttaaaattaactcataaaatagta 29512173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 449 - 566
Target Start/End: Complemental strand, 32835621 - 32835504
Alignment:
Q  449 aattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaa 548  Q
    |||||||||| |||| | |||| |||||||| ||||||||| ||||||| | |  ||||||||||||||||||| | ||| ||||||||||| |||||||    
T  32835621 aattttagtgcccttcctcatactttatgggtacctaagtgctcatacccgcactcattacccgcactttaactatgaaaagacaataaaaatatcacaa 32835522  T
Q  549 ttgaaataaaattatggt 566  Q
    ||||||||||| ||||||    
T  32835521 ttgaaataaaactatggt 32835504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 435 - 616
Target Start/End: Complemental strand, 19996799 - 19996619
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||| |||| ||||||   |||||| | ||||||| ||||||| | | |||||||||||||||| ||| | ||| |||||    
T  19996799 cctcgtgggcaacaacttt-agtgcccttccccataccctatgggtatctaagtgttcatacccgcacccattacccgcactttgactatgaaaagacaa 19996701  T
Q  535 taaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttag 616  Q
    ||||||||||||||||||||||||| |||| ||        || |||| ||||||||||||| |||| ||||| ||||||||    
T  19996700 taaaaacatcacaattgaaataaaactatgatctaaatcttttaaaattaactcataaaataatacaaatcgtagtatttag 19996619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 616
Target Start/End: Original strand, 7842550 - 7842730
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||||||||| | ||| |||| ||||  ||||| | |||||| | |||||||  |||||| | |  ||||||||||||||||||| | ||| |||||    
T  7842550 cctcgtgtgcaactacttt-agtgcccttctccatactctatgggtatctaagtgcccatacccgcactcattacccgcactttaactatgaaaagacaa 7842648  T
Q  535 taaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttag 616  Q
    ||||||||||||| ||||||||||| |||||||        || |||| ||||||||||||| |||| ||||| ||||||||    
T  7842649 taaaaacatcacacttgaaataaaactatggtctaaatctcttaaaattaactcataaaataatacaaatcgtagtatttag 7842730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 431 - 567
Target Start/End: Original strand, 25059081 - 25059216
Alignment:
Q  431 gtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaagg 530  Q
    ||||||||||| ||||||| ||| |||| |||| ||||||   |||||| | |||||||  |||||| | | |||||||||||||||||||| | ||| |    
T  25059081 gtatcctcgtgggcaacaacttt-agtgcccttccccataccctatgggtatctaagtgcccatacccgcacccattacccgcactttaactatgaaaag 25059179  T
Q  531 acaataaaaacatcacaattgaaataaaattatggtc 567  Q
    ||| ||||||||| ||||||||||||||| |||||||    
T  25059180 acattaaaaacattacaattgaaataaaactatggtc 25059216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 449 - 564
Target Start/End: Complemental strand, 31873412 - 31873297
Alignment:
Q  449 aattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaat-aaaaacatcaca 547  Q
    |||||||||||| || ||||||  || |||||||||||||| ||||||||| | ||| ||||| |||||||| | ||||| |||||| ||||||||||||    
T  31873412 aattttagtgtcattccccataccttgtgggcacctaagtgttcatacctgtaccca-tacccacactttaattataaaaagacaataaaaaacatcaca 31873314  T
Q  548 attgaaataaaattatg 564  Q
    |||||||||||| ||||    
T  31873313 attgaaataaaactatg 31873297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 474 - 617
Target Start/End: Original strand, 20414990 - 20415134
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaat-aaaaacatcacaattgaaataaaattatggtccnnnn 572  Q
    ||||||||| ||||||| |||||| | | ||||||||||||||||  || | ||| |||||| |||||||||||||||||||||||| |||| |||        
T  20414990 tatgggcacttaagtggccatacccgcacccattacccgcactttctctatgaaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaa 20415089  T
Q  573 nnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
       || ||||||||| ||||||||||||  ||||| |||||||||    
T  20415090 ttatttaaatcaactaataaaatagtacgaatcgtagtatttagc 20415134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 449 - 598
Target Start/End: Original strand, 48985127 - 48985278
Alignment:
Q  449 aattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaat--aaaaacatcac 546  Q
    |||||| |||||||| | ||||   ||||||||| ||||||  |||||||| | |||||||||||| ||||||||| ||| ||||||  ||||| |||||    
T  48985127 aatttttgtgtccttcctcataccctatgggcacttaagtgtccatacctgcacccattacccgcattttaactgtgaaaagacaataaaaaaatatcac 48985226  T
Q  547 aattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagt 598  Q
    ||||||||||||| |||  |||       |||||||||||||||||||||||    
T  48985227 aattgaaataaaactataatccataaaatttcaaatcaactcataaaatagt 48985278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 431 - 600
Target Start/End: Original strand, 9472928 - 9473098
Alignment:
Q  431 gtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaagg 530  Q
    ||||||||||| ||||||| ||| |||||  |||||||||  ||||||| | ||||||  ||||||| | | ||||||| |||||||||||| | ||| |    
T  9472928 gtatcctcgtgggcaacaacttt-agtgtattttcccataccttatgggtatctaagtactcatacccgcacccattactcgcactttaactatgaaaag 9473026  T
Q  531 acaataaaa-acatcacaattg-aaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtac 600  Q
    ||||||||| | |||||||||| |||||||||||||||||       |||||||||||||| ||| ||||||    
T  9473027 acaataaaatatatcacaattgaaaataaaattatggtcccagaattttcaaatcaactcagaaactagtac 9473098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 452 - 566
Target Start/End: Original strand, 10786217 - 10786331
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattg 551  Q
    ||||||||| ||  ||||| |||||| |||||| |||| ||||||||| |  ||||||||| ||||||| | | ||| ||||||||||| ||||||||||    
T  10786217 tttagtgtcattctccatactttatgagcaccttagtgctcatacctgcactcattacccgtactttaattatgaaaagacaataaaaatatcacaattg 10786316  T
Q  552 aaataaaattatggt 566  Q
    |||||||| ||||||    
T  10786317 aaataaaactatggt 10786331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 474 - 601
Target Start/End: Complemental strand, 31107734 - 31107606
Alignment:
Q  474 tatgggcacctaagtggtcatacc--tgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnn 571  Q
    |||||| || |||||| |||||||  || ||||||||| |||||||||| | | |||| |||||||||| ||||||||| |||||||||||||||||       
T  31107734 tatgggtacttaagtgctcatacccgtgtatccattactcgcactttaaatatgaaag-acaataaaaatatcacaattaaaataaaattatggtccaaa 31107636  T
Q  572 nnnnttcaaatcaactcataaaatagtaca 601  Q
        |||||||||| |||||||||||||||    
T  31107635 ttttttcaaatcaagtcataaaatagtaca 31107606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 452 - 568
Target Start/End: Original strand, 973509 - 973625
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattg 551  Q
    ||||||||| |||||||||   |||||| |||||||||  |||| | | | |||||| ||||||||||| | | ||| ||||||||||||||||||||||    
T  973509 tttagtgtcatttcccataccctatgggtacctaagtgcacatatccgcacccattatccgcactttaattatgaaaagacaataaaaacatcacaattg 973608  T
Q  552 aaataaaattatggtcc 568  Q
    |||||||| || |||||    
T  973609 aaataaaactacggtcc 973625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 435 - 567
Target Start/End: Original strand, 19506367 - 19506498
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||| |||| ||||||   |||||| | |||||||  |||||| | | ||||||||| |||||||||| | ||| || ||    
T  19506367 cctcgtgggcaacaacttt-agtgcccttccccataccctatgggtatctaagtgcccatacccgcacccattacccacactttaactatgaaaagataa 19506465  T
Q  535 taaaaacatcacaattgaaataaaattatggtc 567  Q
    ||||||||||||||||||||||||| |||||||    
T  19506466 taaaaacatcacaattgaaataaaactatggtc 19506498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 435 - 558
Target Start/End: Original strand, 28220952 - 28221074
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||| |||||||||||   |||||| | |||||||  |||||| | | |||||||||||||||||||| | |||  ||||    
T  28220952 cctcgtgggcaacaacttt-agtgccctttcccataccctatgggtatctaagtgcccatacccgcacccattacccgcactttaactatgaaaaaacaa 28221050  T
Q  535 taaaaacatcacaattgaaataaa 558  Q
    | ||||||||||||||||||||||    
T  28221051 tgaaaacatcacaattgaaataaa 28221074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 452 - 599
Target Start/End: Complemental strand, 2465661 - 2465514
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattg 551  Q
    |||||||| ||||||||||  |||||||||| | |||| ||||||| | |  |||| | || ||||||||| | | | ||||||||||| |||||||||     
T  2465661 tttagtgttctttcccataacttatgggcacattagtgttcatacccgcactcattgctcgtactttaactatgagaagacaataaaaatatcacaatta 2465562  T
Q  552 aaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagta 599  Q
    |||||||| |||||| |       ||||||||||||||||||||||||    
T  2465561 aaataaaactatggttcaaattttttcaaatcaactcataaaatagta 2465514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 415 - 599
Target Start/End: Complemental strand, 35949744 - 35949559
Alignment:
Q  415 tttgtaaaaaataattgtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgca 514  Q
    ||||||||||||| | ||| |||||||  |||||| ||| |||||| || ||||||   | ||||||||||||||  |||||| | | ||||||||||||    
T  35949744 tttgtaaaaaatattcgtaccctcgtggacaacaacttt-agtgtcattccccataccctgtgggcacctaagtgcccatacccgcacccattacccgca 35949646  T
Q  515 ctttaactgtaaaaggacaataaaaa--catcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagta 599  Q
     ||||||| | ||| |||||||||||  || ||||| ||||||| || |||| |||       ||||||||||||||||||||||||    
T  35949645 gtttaactctgaaaagacaataaaaaagcaccacaactgaaatacaactatgatccagaaaatttcaaatcaactcataaaatagta 35949559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 621
Target Start/End: Original strand, 48662679 - 48662828
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaata--aaaacatcacaattgaaataaaattatggtccnnn 571  Q
    |||||||||||||||| ||||||| | | |||||||||||| ||||| | | ||| |||||||  ||||   ||||||||||||||||||||  |||       
T  48662679 tatgggcacctaagtgttcatacccgcacccattacccgcattttaattatgaaaagacaataataaaaacccacaattgaaataaaattattatccaaa 48662778  T
Q  572 nnnnttcaaatcaactcataaaatagtacacatcgtggtatttagcaaaa 621  Q
        ||||||||||||||||||||| ||   ||||| |||||||||||||    
T  48662779 aaatttcaaatcaactcataaaataatatgaatcgtagtatttagcaaaa 48662828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 492 - 568
Target Start/End: Original strand, 424611 - 424687
Alignment:
Q  492 catacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtcc 568  Q
    |||||||| | ||||||||| |||||||||| | ||| ||||||||||||||||||| |||||||||| || |||||    
T  424611 catacctgcacccattacccacactttaactatgaaaagacaataaaaacatcacaaatgaaataaaactacggtcc 424687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 435 - 596
Target Start/End: Complemental strand, 31646422 - 31646262
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||| |||| ||||||   ||||||||||||||||  |||||| | | || ||||||||| ||||||| | ||| |||||    
T  31646422 cctcgtgggcaacaacttt-agtgcccttccccataccctatgggcacctaagtgcccatacccgcacccgttacccgcattttaactatgaaaagacaa 31646324  T
Q  535 taaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaata 596  Q
     |||||   |||||||||||||||| |||| |||       |||||||||||||||||||||    
T  31646323 caaaaaacccacaattgaaataaaactatgatccaaaaaatttcaaatcaactcataaaata 31646262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 507 - 559
Target Start/End: Original strand, 38491461 - 38491513
Alignment:
Q  507 tacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||||||||||||| | ||| ||||||||||||||||||||||||||||||    
T  38491461 tacccgcactttaactatgaaaagacaataaaaacatcacaattgaaataaaa 38491513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 504 - 559
Target Start/End: Complemental strand, 2975300 - 2975245
Alignment:
Q  504 cattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||||| |||||||||| | ||| ||||||||||||||||||||||||||||||    
T  2975300 cattacccccactttaactatgaaaagacaataaaaacatcacaattgaaataaaa 2975245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 504 - 559
Target Start/End: Original strand, 2978471 - 2978526
Alignment:
Q  504 cattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||||| |||||||||| | ||| ||||||||||||||||||||||||||||||    
T  2978471 cattacccccactttaactatgaaaagacaataaaaacatcacaattgaaataaaa 2978526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 504 - 559
Target Start/End: Original strand, 34321000 - 34321057
Alignment:
Q  504 cattacccgcactttaactgtaaaaggacaat--aaaaacatcacaattgaaataaaa 559  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||||||||| ||||    
T  34321000 cattacccgcactttaattgtaaaaggacaataaaaaaacatcacaattgaaagaaaa 34321057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 533 - 599
Target Start/End: Complemental strand, 13797098 - 13797032
Alignment:
Q  533 aataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagta 599  Q
    ||||||||||||||||||||||||||||||||||||       || |||| ||||||||||||||||    
T  13797098 aataaaaacatcacaattgaaataaaattatggtccaatttttttaaaattaactcataaaatagta 13797032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 452 - 564
Target Start/End: Original strand, 30489666 - 30489779
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaat-aaaaacatcacaatt 550  Q
    ||||||| |||| |||||||  ||||| ||||||||||   ||||| | | |||||||||||||||||| | ||||| | |||| |||||||||| ||||    
T  30489666 tttagtgcccttccccatatcctatggacacctaagtgcctatacccgtacccattacccgcactttaattataaaaagtcaataaaaaacatcataatt 30489765  T
Q  551 gaaataaaattatg 564  Q
    ||||||||| ||||    
T  30489766 gaaataaaactatg 30489779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 474 - 559
Target Start/End: Complemental strand, 44328015 - 44327930
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||| |||||||||  |||||| | | |||||||||||||||||||| | |||  |||| ||||||||||||| ||||||||||    
T  44328015 tatgggtacctaagtgtccatacccgcacccattacccgcactttaactatgaaaaaacaaaaaaaacatcacaaatgaaataaaa 44327930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 476 - 599
Target Start/End: Original strand, 48796561 - 48796686
Alignment:
Q  476 tgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa--catcacaattgaaataaaattatggtccnnnnn 573  Q
    ||||||||||||||  |||||| | | |||||||||||| ||||||| | ||| |||||||||||  || ||||| ||||||| || |||| |||         
T  48796561 tgggcacctaagtgcccatacccgcacccattacccgcagtttaactctgaaaagacaataaaaaagcaccacaactgaaatacaactatgatccagaaa 48796660  T
Q  574 nnttcaaatcaactcataaaatagta 599  Q
      ||||||||||||||||||||||||    
T  48796661 atttcaaatcaactcataaaatagta 48796686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 474 - 564
Target Start/End: Complemental strand, 4893378 - 4893287
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa-catcacaattgaaataaaattatg 564  Q
    ||||||||| |||||| |||||||   | ||||||||||||||||  || | ||| ||||||||||| ||||||||||||||||||| ||||    
T  4893378 tatgggcacttaagtgctcatacccccacccattacccgcactttctctatgaaaagacaataaaaaacatcacaattgaaataaaactatg 4893287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 474 - 564
Target Start/End: Original strand, 29185109 - 29185200
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaa-acatcacaattgaaataaaattatg 564  Q
    ||||||||| |||||| |||||||   | ||||||||||||||||  || | ||| |||||||||| |||||||||||||||||||| ||||    
T  29185109 tatgggcacttaagtgctcatacccccacccattacccgcactttctctatgaaaagacaataaaaaacatcacaattgaaataaaactatg 29185200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 401 - 596
Target Start/End: Complemental strand, 29426471 - 29426274
Alignment:
Q  401 atcccacacccgcatttgtaaaaaataattgtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctga 500  Q
    |||||| | |||| |||||||||||||   ||| ||||||| ||||||| ||| |||| |||| ||||||   ||||||||||||||||  |||||| |     
T  29426471 atcccatatccgcgtttgtaaaaaatacccgtaccctcgtgggcaacaacttt-agtgcccttccccataccatatgggcacctaagtgcccatacccgc 29426373  T
Q  501 atccattacccgcactttaactgtaaaaggacaataaaaa---catcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaata 596  Q
    | ||||||||| || ||||||| | ||| || ||||||||   || |||| |||||||| || |||| |||       |||||||||||||||||||||    
T  29426372 acccattacccacagtttaactctgaaaagataataaaaaaagcaccacagttgaaatacaactatgatccagaaaatttcaaatcaactcataaaata 29426274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 511 - 617
Target Start/End: Complemental strand, 16177120 - 16177013
Alignment:
Q  511 cgcactttaactgtaaaaggacaataaaaa-catcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtgg 609  Q
    |||||||||| | ||||| ||||||||||| |||||| |||||||||||| |||| |||       || ||||||||||||||||||| | | ||||| |    
T  16177120 cgcactttaattataaaaagacaataaaaaacatcaccattgaaataaaactatgatccaattttttttaaatcaactcataaaatagcagaaatcgtag 16177021  T
Q  610 tatttagc 617  Q
    ||||||||    
T  16177020 tatttagc 16177013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 564
Target Start/End: Original strand, 35659548 - 35659661
Alignment:
Q  452 tttagtgtcctttccc-atattttatgggcacctaagtggtcatacctgaatccattaccc-gcactttaactgtaaaaggacaataaaaacatcacaat 549  Q
    |||||||||||| ||| |||  ||||||| ||||||||| | |||| || | ||||||||| |||| |||||| | |||  |||||||||||||||||||    
T  35659548 tttagtgtccttcccccataccttatgggtacctaagtgtttatacatgcacccattaccccgcacgttaactatgaaat-acaataaaaacatcacaat 35659646  T
Q  550 tgaaataaaattatg 564  Q
    |||||||||| ||||    
T  35659647 tgaaataaaactatg 35659661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 507 - 564
Target Start/End: Complemental strand, 21260800 - 21260743
Alignment:
Q  507 tacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatg 564  Q
    ||||| |||||||||| | |||  |||||||||||||||||||||||| |||||||||    
T  21260800 tacccacactttaactatgaaaaaacaataaaaacatcacaattgaaacaaaattatg 21260743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 601
Target Start/End: Complemental strand, 30623028 - 30622958
Alignment:
Q  531 acaataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtaca 601  Q
    |||||||||| ||||| |||||||||||  ||||||||       ||||||||||||||||||||||||||    
T  30623028 acaataaaaatatcacgattgaaataaatctatggtccaaaaattttcaaatcaactcataaaatagtaca 30622958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 501 - 564
Target Start/End: Complemental strand, 3821334 - 3821270
Alignment:
Q  501 atccattacccgcactttaactgtaaaaggacaataaaaa-catcacaattgaaataaaattatg 564  Q
    |||| ||| ||||||||||||| | ||| ||||||||||| ||||||||||||||||||| ||||    
T  3821334 atcccttatccgcactttaactatgaaaagacaataaaaaacatcacaattgaaataaaactatg 3821270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 473 - 564
Target Start/End: Original strand, 50099834 - 50099926
Alignment:
Q  473 ttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa-catcacaattgaaataaaattatg 564  Q
    |||||||||| ||||||  |||||| | | |||||||| |||||||||| || ||| || |||||||| || |||||||||||||||| ||||    
T  50099834 ttatgggcacttaagtgcccatacccgcacccattacctgcactttaaccgtgaaaagataataaaaaacaccacaattgaaataaaactatg 50099926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 568
Target Start/End: Original strand, 236381 - 236483
Alignment:
Q  468 atattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggac--aataaaaacatcacaattgaaataaaattatgg 565  Q
    ||||| |||||| |||||||||  |||||| | | ||||||| || ||||||||||| ||| |||  |||  ||||||||||||||||||| || |||||    
T  236381 atattctatgggtacctaagtgcccatacccgtacccattactcgtactttaactgtgaaaagacaaaatttaaacatcacaattgaaatagaactatgg 236480  T
Q  566 tcc 568  Q
    |||    
T  236481 tcc 236483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 474 - 559
Target Start/End: Complemental strand, 29054691 - 29054605
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgt-aaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||| |||||||||  |||||| | | |||||||||||||||||||| | ||||    |||||||||||||||| ||||||||||    
T  29054691 tatgggtacctaagtgtccatacccgcacccattacccgcactttaactatgaaaaaataaataaaaacatcacaaatgaaataaaa 29054605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 567
Target Start/End: Original strand, 40044995 - 40045032
Alignment:
Q  530 gacaataaaaacatcacaattgaaataaaattatggtc 567  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  40044995 gacaataaaaacatcacaattgtaataaaactatggtc 40045032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 6e-24; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 430 - 600
Target Start/End: Original strand, 8614535 - 8614704
Alignment:
Q  430 tgtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaag 529  Q
    |||||||||||| ||||||| |||||||||| ||||| |||| |||||||  ||| |||  || ||| || |||||||| ||||||||||||| | |||     
T  8614535 tgtatcctcgtgagcaacaa-ttttagtgtcatttcctatatcttatgggtgccttagtcctcgtacttgcatccattatccgcactttaactatgaaaa 8614633  T
Q  530 gacaataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtac 600  Q
    ||||||||||| ||| |||||||| |||||| ||||| |       |||||||||||||||||||||||||    
T  8614634 gacaataaaaatatctcaattgaactaaaatcatggttcaaaaagtttcaaatcaactcataaaatagtac 8614704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 403 - 617
Target Start/End: Original strand, 22829700 - 22829914
Alignment:
Q  403 cccacacccgcatttgtaaaaaataattgtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaat 502  Q
    |||| |||||| |||||||||||||   ||| ||||||| ||||||| ||| |||| |||| ||||||   ||||||||||||||||  |||||| | |     
T  22829700 cccatacccgcgtttgtaaaaaatacccgtaccctcgtgggcaacaacttt-agtgcccttccccataccctatgggcacctaagtgcccatacccgcac 22829798  T
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaaca-tcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtaca 601  Q
    |||||||||||| ||||||| | |||  |||||||||| |  |||||||||||||||| |||| |||       ||||||||||||||||||||| ||      
T  22829799 ccattacccgcattttaactatgaaaaaacaataaaaaaacccacaattgaaataaaactatgatccaaaaaatttcaaatcaactcataaaataatatg 22829898  T
Q  602 catcgtggtatttagc 617  Q
     ||||| |||||||||    
T  22829899 aatcgtagtatttagc 22829914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 431 - 559
Target Start/End: Complemental strand, 1731171 - 1731044
Alignment:
Q  431 gtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaagg 530  Q
    ||||| |||||  |||||||||| |||  |||| |||||| | |||||| |||||||||  |||||||| |||||||  ||||||||||| | | ||| |    
T  1731171 gtatcttcgtgaacaacaaattt-agtacccttccccatactctatgggtacctaagtgcccatacctgcatccattgtccgcactttaattatgaaaag 1731073  T
Q  531 acaataaaaacatcacaattgaaataaaa 559  Q
    |||||||||||||||||||||||||||||    
T  1731072 acaataaaaacatcacaattgaaataaaa 1731044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 452 - 564
Target Start/End: Complemental strand, 22313455 - 22313343
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattg 551  Q
    |||||||||||| |||||||  |||||| | |||||||  |||||| | |  ||||| ||||||||||||| | |||  |||||||||||||||||||||    
T  22313455 tttagtgtccttccccatatcctatgggtatctaagtgtccatacccgcactcattatccgcactttaactatgaaaaaacaataaaaacatcacaattg 22313356  T
Q  552 aaataaaattatg 564  Q
    |||||||||||||    
T  22313355 aaataaaattatg 22313343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 435 - 567
Target Start/End: Complemental strand, 34459747 - 34459616
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||||||||||| ||| |||||| || | ||||   |||||| | |||||||  ||||| || |  ||||||||||||||||||| | ||| |||||    
T  34459747 cctcgtgtgcaacaacttt-agtgtcattcctcataccctatgggtatctaagtgcacatacttgcactcattacccgcactttaactatgaaaagacaa 34459649  T
Q  535 taaaaacatcacaattgaaataaaattatggtc 567  Q
    ||||||||||||||||||||||||| |||||||    
T  34459648 taaaaacatcacaattgaaataaaactatggtc 34459616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 481 - 617
Target Start/End: Complemental strand, 51807002 - 51806865
Alignment:
Q  481 acctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaata-aaaacatcacaattgaaataaaattatggtccnnnnnnnttca 579  Q
    |||||||||  |||||||| | |||||||||||||||||| | ||||| ||||||| |||||||||| |||||||||||| |||| |||       || |    
T  51807002 acctaagtgcccatacctgtacccattacccgcactttaattataaaaagacaataaaaaacatcaccattgaaataaaactatgatccaatttttttaa 51806903  T
Q  580 aatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    || ||||||||||||||||| | ||||| |||||||||    
T  51806902 aagcaactcataaaatagtagaaatcgtagtatttagc 51806865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 430 - 564
Target Start/End: Original strand, 14595289 - 14595423
Alignment:
Q  430 tgtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaag 529  Q
    |||||||||||| | ||||| ||| |||||| ||  |||||  |||||| |||||||||| ||||||| | |||||||||||||||||||| | |||||     
T  14595289 tgtatcctcgtgggtaacaacttt-agtgtcattctccataccttatggacacctaagtgctcatacccgtatccattacccgcactttaattataaaac 14595387  T
Q  530 gacaat-aaaaacatcacaattgaaataaaattatg 564  Q
    |||||| ||||| ||||| |||||||||||| ||||    
T  14595388 gacaataaaaaatatcaccattgaaataaaactatg 14595423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 512 - 601
Target Start/End: Complemental strand, 7117973 - 7117885
Alignment:
Q  512 gcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtaca 601  Q
    ||||||||||| | |||| |||||||||||| |||||||||| ||||||||||||||       ||||||||||||||||||||||||||    
T  7117973 gcactttaactatgaaag-acaataaaaacaacacaattgaactaaaattatggtccaaattttttcaaatcaactcataaaatagtaca 7117885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 435 - 615
Target Start/End: Complemental strand, 29405989 - 29405809
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggac-a 533  Q
    ||||||| ||||||| ||| |||| |||| |||||| | ||||||||||||||||  |||||||| | |||||| |||||||||  || | ||| ||| |    
T  29405989 cctcgtgggcaacaacttt-agtgcccttccccatactctatgggcacctaagtgcccatacctgcacccattatccgcactttctctatgaaaagacaa 29405891  T
Q  534 ataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtattta 615  Q
    | ||||| |||||||||||||||||| |||| |||       || ||||||||| ||||||||||||  ||||| |||||||    
T  29405890 aaaaaaatatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaatagtacgaatcgtagtattta 29405809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 452 - 564
Target Start/End: Original strand, 33983147 - 33983259
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattg 551  Q
    ||||||| ||||||| ||||  |||||| | |||||||  |||||| | | |||||||||||||||||||| | |||  | ||| |||||||||||||||    
T  33983147 tttagtgccctttcctatatcctatgggtatctaagtgcccatacccgcacccattacccgcactttaactatgaaaaaataatgaaaacatcacaattg 33983246  T
Q  552 aaataaaattatg 564  Q
    |||||||||||||    
T  33983247 aaataaaattatg 33983259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 452 - 613
Target Start/End: Complemental strand, 8644331 - 8644170
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattg 551  Q
    ||||||||| |||| ||||| ||||||| | || |||   |||||| | |||||||| |  |||||||| | | ||| ||||||||||| ||||||||||    
T  8644331 tttagtgtcatttctcatatcttatgggtaacttagttcccatacccgcatccattatctacactttaattatgaaaagacaataaaaatatcacaattg 8644232  T
Q  552 aaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatt 613  Q
    || |||||| ||||| |       |||||||||||||||||||||||||  ||||| |||||    
T  8644231 aactaaaatcatggttcaaaaattttcaaatcaactcataaaatagtacgaatcgtagtatt 8644170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 505 - 567
Target Start/End: Complemental strand, 28928670 - 28928608
Alignment:
Q  505 attacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtc 567  Q
    |||| ||||||||||||| | ||| |||||||||||||| ||||||||||||||| |||||||    
T  28928670 attatccgcactttaactatgaaaagacaataaaaacattacaattgaaataaaactatggtc 28928608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 452 - 596
Target Start/End: Complemental strand, 31713735 - 31713589
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaaca--tcacaat 549  Q
    ||||||||||||  ||||| | ||||||||||||||||  |||||| | | | |||||||||| ||||| | | ||| ||||||||||| |   ||||||    
T  31713735 tttagtgtccttctccatactctatgggcacctaagtgtccatacccgcacctattacccgcattttaattatgaaaagacaataaaaaaaacccacaat 31713636  T
Q  550 tgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaata 596  Q
    |||||||||| |||| |||       |||||||||||||||||||||    
T  31713635 tgaaataaaactatgatccaaaaaatttcaaatcaactcataaaata 31713589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 452 - 553
Target Start/End: Original strand, 33733387 - 33733489
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaat-aaaaacatcacaatt 550  Q
    |||||||||||| ||||||   ||||||||| ||||||  |||||||| | ||||||||||||||||  || | ||| |||||| |||||||||||||||    
T  33733387 tttagtgtccttccccataccctatgggcacttaagtgcccatacctgcacccattacccgcactttctctatgaaaagacaataaaaaacatcacaatt 33733486  T
Q  551 gaa 553  Q
    |||    
T  33733487 gaa 33733489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 474 - 559
Target Start/End: Complemental strand, 3387294 - 3387209
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||| || ||||||  |||||| | | |||||||||||||||||||| | ||| ||||| ||||||||||||| ||||||||||    
T  3387294 tatgggtacttaagtgcccatacccgcacccattacccgcactttaactatgaaaagacaaaaaaaacatcacaaatgaaataaaa 3387209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 475 - 559
Target Start/End: Complemental strand, 2225034 - 2224950
Alignment:
Q  475 atgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    ||||| ||||||||| ||||||| | | |||||||||||||||||||| | |||  |||| ||||| ||||||| ||||||||||    
T  2225034 atgggtacctaagtgctcatacccgcacccattacccgcactttaactatgaaaaaacaaaaaaaatatcacaaatgaaataaaa 2224950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 403 - 617
Target Start/End: Original strand, 22247822 - 22248037
Alignment:
Q  403 cccacacccgcatttgtaaaaaataattgtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaat 502  Q
    |||| |||| ||||||||||||||    ||| ||| ||| ||||||| ||| |||| |||| ||||||   ||| ||||| |||||| ||||||| | |     
T  22247822 cccataccctcatttgtaaaaaatgcacgtacccttgtgggcaacaacttt-agtgcccttccccataccctataggcacttaagtgctcatacccgcac 22247920  T
Q  503 ccattacccgcactttaactgtaaaaggacaataaaa--acatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtac 600  Q
    |||||| |||||||||  || | ||| ||||||||||  |||||||||||||||||||| |||| |||       || ||||||||| |||||||| |||    
T  22247921 ccattatccgcactttctctatgaaaagacaataaaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaataatac 22248020  T
Q  601 acatcgtggtatttagc 617  Q
    | || || |||||||||    
T  22248021 aaattgtagtatttagc 22248037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 512 - 617
Target Start/End: Original strand, 44808532 - 44808637
Alignment:
Q  512 gcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggta 611  Q
    ||||||||| | ||||| ||||||||||||||||||| | | ||||||||||| |||       || ||| ||||||||||||||||| | ||||| |||    
T  44808532 gcactttaattataaaaagacaataaaaacatcacaacttatataaaattatgatccatttttttttaaagcaactcataaaatagtagaaatcgtagta 44808631  T
Q  612 tttagc 617  Q
    ||||||    
T  44808632 tttagc 44808637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 503 - 598
Target Start/End: Complemental strand, 50982004 - 50981907
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaa-acatcacaattgaaa-taaaattatggtccnnnnnnnttcaaatcaactcataaaatagt 598  Q
    |||||||| ||||||||||| ||||| |||||| ||| | ||||||||||||| ||||| ||||||||       |||||||||||||||||||||||    
T  50982004 ccattacctgcactttaactataaaaagacaatcaaatatatcacaattgaaaataaaactatggtcccaaatttttcaaatcaactcataaaatagt 50981907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 503 - 562
Target Start/End: Original strand, 25938426 - 25938485
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaatta 562  Q
    |||||||| ||||||||||| |||||  |||| ||||||||||||| |||||||||||||    
T  25938426 ccattaccagcactttaactataaaaaaacaaaaaaaacatcacaaatgaaataaaatta 25938485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 474 - 564
Target Start/End: Complemental strand, 52802343 - 52802252
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa-catcacaattgaaataaaattatg 564  Q
    ||||||||| |||||| |||||||   | ||||||||||||||||  || | ||| ||||||||||| ||||||||||||||||||| ||||    
T  52802343 tatgggcacttaagtgctcatacccccacccattacccgcactttctctatgaaaagacaataaaaaacatcacaattgaaataaaactatg 52802252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 474 - 564
Target Start/End: Original strand, 53140643 - 53140734
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaa-acatcacaattgaaataaaattatg 564  Q
    ||||||||| |||||| |||||||   | ||||||||||||||||  || | ||| |||||||||| |||||||||||||||||||| ||||    
T  53140643 tatgggcacttaagtgctcatacccccacccattacccgcactttctctatgaaaagacaataaaaaacatcacaattgaaataaaactatg 53140734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 564
Target Start/End: Complemental strand, 21297331 - 21297273
Alignment:
Q  507 tacccgcactttaactgtaaaaggacaataaaaa-catcacaattgaaataaaattatg 564  Q
    |||||||||||||||| | ||| ||||||||||| ||||| ||||||||||||||||||    
T  21297331 tacccgcactttaactatgaaaagacaataaaaaacatcataattgaaataaaattatg 21297273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 522
Target Start/End: Original strand, 29994330 - 29994400
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaact 522  Q
    ||||||| ||||| ||||||| |||||| |||||| ||  | |||||| ||||||||||||||||||||||    
T  29994330 tttagtgcccttttccatattctatgggtacctaaatgtccgtacctgcatccattacccgcactttaact 29994400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 433 - 564
Target Start/End: Complemental strand, 56445281 - 56445149
Alignment:
Q  433 atcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggac 532  Q
    ||||||||| ||||||| ||| ||||||||| ||||||  |||||||||| ||||||  |||||  | | ||||||||||||||||| |  | ||| ||     
T  56445281 atcctcgtgggcaacaacttt-agtgtccttccccataccttatgggcacttaagtgcccatactcgcacccattacccgcactttagccatgaaaagat 56445183  T
Q  533 aat--aaaaacatcacaattgaaataaaattatg 564  Q
    |||  ||||||| |||||||||||||||| ||||    
T  56445182 aataaaaaaacaccacaattgaaataaaactatg 56445149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 599
Target Start/End: Original strand, 7262052 - 7262170
Alignment:
Q  482 cctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa-catcacaattgaaataaaattatggtccnnnnnnnttcaa 580  Q
    ||||||||  |||||| | | |||||||||||| ||||||| | ||| ||||||||||| || ||||| ||||||| || |||| |||       |||||    
T  7262052 cctaagtgcccatacccgcacccattacccgcagtttaactctgaaaagacaataaaaagcaccacaactgaaatacaactatgatccagaaaatttcaa 7262151  T
Q  581 atcaactcataaaatagta 599  Q
    |||||||||||||||||||    
T  7262152 atcaactcataaaatagta 7262170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 559
Target Start/End: Complemental strand, 39485238 - 39485126
Alignment:
Q  449 aattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa--catcac 546  Q
    ||||||||||||||| |||||| | |   ||||||||||||  |||| | | |  |||| |||||||||||| | ||||| |||||||||||  ||||||    
T  39485238 aattttagtgtccttccccatactctgcaggcacctaagtgcccatatccgtaaacattgcccgcactttaattataaaaagacaataaaaaaacatcac 39485139  T
Q  547 aattgaaataaaa 559  Q
    |||||||||||||    
T  39485138 aattgaaataaaa 39485126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 460 - 559
Target Start/End: Original strand, 41003338 - 41003440
Alignment:
Q  460 cctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgt---aaaaggacaataaaaacatcacaattgaaata 556  Q
    |||| |||||||  |||||| ||||||||| ||||||| | | |||||||||||||||||||| |   ||||  | || ||||||||||||| |||||||    
T  41003338 ccttccccatatcctatgggtacctaagtgctcatacccgcacccattacccgcactttaactatgaaaaaacaaaaaaaaaaacatcacaaatgaaata 41003437  T
Q  557 aaa 559  Q
    |||    
T  41003438 aaa 41003440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 474 - 600
Target Start/End: Original strand, 45097594 - 45097722
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaat--aaaaacatcacaattgaaataaaattatggtccnnn 571  Q
    ||||||||||||||||   ||||| | | ||||||||||||||||  || | ||| ||||||  ||||||||||||||| |||||||| |||| |||       
T  45097594 tatgggcacctaagtgcctatacccgcacccattacccgcactttctctatgaaaagacaataaaaaaacatcacaattaaaataaaactatgatccaaa 45097693  T
Q  572 nnnnttcaaatcaactcataaaatagtac 600  Q
        || ||||||||| ||||||||||||    
T  45097694 attatttaaatcaactaataaaatagtac 45097722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 492 - 568
Target Start/End: Original strand, 46030305 - 46030381
Alignment:
Q  492 catacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtcc 568  Q
    |||||| | ||| ||||||||||||||| || | |||    ||||||| ||||||||||||||||||||||||||||    
T  46030305 catacccgcatctattacccgcactttagctatgaaaaaggaataaaagcatcacaattgaaataaaattatggtcc 46030381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 566
Target Start/End: Original strand, 5798309 - 5798368
Alignment:
Q  507 tacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggt 566  Q
    ||||| || ||||| ||| ||| ||||||||||| || ||||||||||||||||||||||    
T  5798309 tacccacattttaaatgtgaaaagacaataaaaatattacaattgaaataaaattatggt 5798368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 554
Target Start/End: Complemental strand, 7250566 - 7250519
Alignment:
Q  507 tacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaa 554  Q
    |||| ||||||||||| | ||| |||||||||||||||||||||||||    
T  7250566 tacctgcactttaactatgaaaagacaataaaaacatcacaattgaaa 7250519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 501 - 559
Target Start/End: Original strand, 21245899 - 21245956
Alignment:
Q  501 atccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||||| || |||||||||| | ||||||||| ||||||||||||| ||||||||||    
T  21245899 atccattatccacactttaactatgaaaggacaa-aaaaacatcacaaatgaaataaaa 21245956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 452 - 522
Target Start/End: Original strand, 31786424 - 31786494
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaact 522  Q
    |||||||||||||||||||   ||||||||||||||||   ||||| | | |||||||||||| |||||||    
T  31786424 tttagtgtcctttcccataccctatgggcacctaagtgtctatacccgcacccattacccgcattttaact 31786494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 481 - 559
Target Start/End: Original strand, 42755380 - 42755458
Alignment:
Q  481 acctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||||||  |||||| | | |||||||||||||||||||| | |||  |||| ||||||||||||| | ||||||||    
T  42755380 acctaagtgcacatacccgcacccattacccgcactttaactatgaaaaaacaaaaaaaacatcacaaatcaaataaaa 42755458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 567
Target Start/End: Complemental strand, 2073668 - 2073611
Alignment:
Q  510 ccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtc 567  Q
    ||||||||| ||| | |||  |||||||||||||||||||||| |||||| |||||||    
T  2073668 ccgcactttgactatgaaaacacaataaaaacatcacaattgagataaaactatggtc 2073611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 540
Target Start/End: Original strand, 11034690 - 11034794
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||| |||| ||||||   ||||||||||||||||  |||||| | | |||||| ||||| ||||||| | ||| |||||    
T  11034690 cctcgtgggcaacaacttt-agtgcccttccccataccctatgggcacctaagtgcccatacccgcacccattatccgcagtttaactctgaaaagacaa 11034788  T
Q  535 taaaaa 540  Q
    ||||||    
T  11034789 taaaaa 11034794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 559
Target Start/End: Original strand, 52595577 - 52595662
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||| || ||||||  |||||| | | |||||||||||||||||||| | |||  |||| ||||||||||||| | ||||||||    
T  52595577 tatgggtacttaagtgtccatacccgcacccattacccgcactttaactatgaaaaaacaaaaaaaacatcacaagtaaaataaaa 52595662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 3e-23; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 431 - 567
Target Start/End: Complemental strand, 668098 - 667963
Alignment:
Q  431 gtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaagg 530  Q
    ||||||||||| ||||||| ||| |||| |||| |||||||  |||||| |||||||||  |||||| | | |||||| ||||||||||||| | ||| |    
T  668098 gtatcctcgtgggcaacaacttt-agtgcccttccccatatcctatgggtacctaagtgcccatacccgcacccattatccgcactttaactatgaaaag 668000  T
Q  531 acaataaaaacatcacaattgaaataaaattatggtc 567  Q
    |||||||||| |||||||||||||||||| |||||||    
T  667999 acaataaaaatatcacaattgaaataaaactatggtc 667963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 503 - 599
Target Start/End: Original strand, 29155364 - 29155460
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagta 599  Q
    |||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||| ||||||||       || |||| ||||||||||||||||    
T  29155364 ccattacccgcactttaactatgaaaagacattaaaaacatcacaattgaaataaaactatggtccaattttttttaaattaactcataaaatagta 29155460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 449 - 597
Target Start/End: Complemental strand, 16711453 - 16711305
Alignment:
Q  449 aattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaa 548  Q
    ||||||| ||||||| | ||||   |||| |||| ||||||  |||||| | | |||||| |||| |||||| | | ||| |||||||||||||||| ||    
T  16711453 aattttaatgtccttcctcataccctatgagcacttaagtgcccatacccgtacccattatccgctctttaaatatgaaaagacaataaaaacatcataa 16711354  T
Q  549 ttgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatag 597  Q
    ||||||||||| ||||||||       ||||||||||||| ||||||||    
T  16711353 ttgaaataaaactatggtcccaaagttttcaaatcaactcgtaaaatag 16711305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 478 - 617
Target Start/End: Complemental strand, 39767212 - 39767073
Alignment:
Q  478 ggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaat-aaaaacatcacaattgaaataaaattatggtccnnnnnnnt 576  Q
    |||||||||||| ||||||||| | ||||||||| |||||||| | |||||  ||||| ||||| ||| |||||||||||||| |||| |||       |    
T  39767212 ggcacctaagtgctcatacctgtacccattacccacactttaattataaaaatacaataaaaaatatcgcaattgaaataaaactatgatccaatttttt 39767113  T
Q  577 tcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    | ||| ||||||||||||||||| | ||||| |||||||||    
T  39767112 t-aaagcaactcataaaatagtagaaatcgtagtatttagc 39767073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 503 - 559
Target Start/End: Complemental strand, 4592250 - 4592194
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||||||||||||||||| | ||| || |||||||| ||||||||||||||||||    
T  4592250 ccattacccgcactttaactatgaaaagaaaataaaaatatcacaattgaaataaaa 4592194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 504 - 621
Target Start/End: Original strand, 12757815 - 12757932
Alignment:
Q  504 cattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacaca 603  Q
    ||||||||||||||||| | | ||| ||||||||||| ||||||| |||||||||| ||||||         ||||||||| ||||||||||||||   |    
T  12757815 cattacccgcactttaattatgaaaagacaataaaaatatcacaaatgaaataaaactatggttaaatttttttcaaatcagctcataaaatagtaagaa 12757914  T
Q  604 tcgtggtatttagcaaaa 621  Q
    |||| ||||||| |||||    
T  12757915 tcgtagtatttaacaaaa 12757932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 452 - 559
Target Start/End: Original strand, 20937043 - 20937149
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattg 551  Q
    |||||||||||| ||||||  | ||||| |||||||||  |||||| | |   ||||||| |||||||| | | ||| ||||||||||||||||||||||    
T  20937043 tttagtgtccttccccatacct-atgggtacctaagtgtccatacccgcacttattacccacactttaattatgaaaagacaataaaaacatcacaattg 20937141  T
Q  552 aaataaaa 559  Q
    ||||||||    
T  20937142 aaataaaa 20937149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 435 - 617
Target Start/End: Original strand, 2656779 - 2656961
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| ||||||||| ||||||   |||||| || ||||||  ||||||   |  ||||||| ||||||||||  | ||| |||||    
T  2656779 cctcgtgggcaacaacttt-agtgtccttccccataccctatgggtacttaagtgtccatacccacacacattacctgcactttaaccatcaaaagacaa 2656877  T
Q  535 taaaaa-catcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    |||||| || || |||||||||||||||||| |||       |||||||||||| |||||||||||   ||||| |||||||||    
T  2656878 taaaaaacaccataattgaaataaaattatgatccaaaaaatttcaaatcaactaataaaatagtatgaatcgtagtatttagc 2656961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 453 - 599
Target Start/End: Original strand, 8753843 - 8753989
Alignment:
Q  453 ttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa-catcacaattg 551  Q
    ||||||||||| |||||||  |||||| || ||||||   ||||||| |  ||||| ||||||| ||||  | ||| ||||||||||| || ||||||||    
T  8753843 ttagtgtcctt-cccatatcatatgggtacttaagtgtctatacctgcagtcattatccgcactataaccatgaaaagacaataaaaaacaccacaattg 8753941  T
Q  552 aaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagta 599  Q
    ||||||||||||| |||       |||||||||||| |||||||||||    
T  8753942 aaataaaattatgatccgcaaaatttcaaatcaactaataaaatagta 8753989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 481 - 559
Target Start/End: Complemental strand, 31440714 - 31440636
Alignment:
Q  481 acctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||||||  |||||| | | |||||||||||||||||||| | |||  |||| ||||||||||||| ||||||||||    
T  31440714 acctaagtgcccatacccgcacccattacccgcactttaactatgaaaaaacaaaaaaaacatcacaaatgaaataaaa 31440636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 534 - 567
Target Start/End: Complemental strand, 15150252 - 15150219
Alignment:
Q  534 ataaaaacatcacaattgaaataaaattatggtc 567  Q
    ||||||||||||||||||||||||||||||||||    
T  15150252 ataaaaacatcacaattgaaataaaattatggtc 15150219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 474 - 616
Target Start/End: Original strand, 15234329 - 15234473
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa--catcacaattgaaataaaattatggtccnnn 571  Q
    |||||||||  ||||| |||| || | | ||| ||||||||||||| || | ||| || ||||||||  |||||||||||||| |||| |||| |||       
T  15234329 tatgggcacaaaagtgctcattcccgcacccaatacccgcactttatctatgaaaagaaaataaaaaatcatcacaattgaaacaaaactatgatccaaa 15234428  T
Q  572 nnnnttcaaatcaactcataaaatagtacacatcgtggtatttag 616  Q
        ||||||||||||| |||||| ||||| ||||| ||||||||    
T  15234429 attattcaaatcaactcttaaaatcgtacaaatcgtagtatttag 15234473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 402 - 562
Target Start/End: Original strand, 30241377 - 30241536
Alignment:
Q  402 tcccacacccgcatttgtaaaaaataattgtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaa 501  Q
    ||||| |||||||||| |||||||||   | ||||||||  ||||||| ||| ||| |||||  |||||   |||||| |||||||||  |||||  | |    
T  30241377 tcccatacccgcatttataaaaaatacccggatcctcgtcggcaacaacttt-agtctccttctccataccctatgggtacctaagtgcccatactcgca 30241475  T
Q  502 tccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaatta 562  Q
     |||||||||||||||||||| | |||  |||| || |||||||||| | |||||||||||    
T  30241476 cccattacccgcactttaactatgaaaaaacaaaaagaacatcacaaataaaataaaatta 30241536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 564
Target Start/End: Original strand, 4289659 - 4289750
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaat-aaaaacatcacaattgaaataaaattatg 564  Q
    ||||||||| |||||| |||||||   | ||||||||||||||||  || | ||| |||||| ||||| |||||||||||||||||| ||||    
T  4289659 tatgggcacttaagtgctcatacccccacccattacccgcactttctctatgaaaagacaataaaaaatatcacaattgaaataaaactatg 4289750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 559
Target Start/End: Complemental strand, 13142639 - 13142572
Alignment:
Q  492 catacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||| | |||||||||||||||||||||| |  ||  |||| ||||||||||||| ||||||||||    
T  13142639 catacccgcatccattacccgcactttaactatggaaaaacaaaaaaaacatcacaaatgaaataaaa 13142572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 617
Target Start/End: Complemental strand, 29546181 - 29546035
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacat---cacaattgaaataaaattatggtccnn 570  Q
    ||||||||||||||||  |||||| | | |||||||||||| ||||||| | ||| ||||||||||| |    ||| |||||||||||| |||| |||      
T  29546181 tatgggcacctaagtgtccatacccgcacccattacccgcattttaactatgaaaagacaataaaaaaaaaaccacgattgaaataaaactatgatccaa 29546082  T
Q  571 nnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
         ||||||||||||||||| ||| ||   ||||| |||||||||    
T  29546081 aaagtttcaaatcaactcataacataatatgaatcgtagtatttagc 29546035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 596
Target Start/End: Complemental strand, 41935648 - 41935486
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| ||||||||| | ||||   |||||||||||||||| ||||||| | | ||||||||| || ||||| | | ||| |||||    
T  41935648 cctcgtgggcaacaacttt-agtgtccttcctcataccctatgggcacctaagtgctcatacccgcacccattacccacagtttaattctgaaaagacaa 41935550  T
Q  535 taaaaa--catcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaata 596  Q
    ||||||  || ||||| ||||||| || |||  |||       |||||||||||||||||||||    
T  41935549 taaaaaagcaccacaactgaaatacaactataatccagaaaatttcaaatcaactcataaaata 41935486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 516 - 566
Target Start/End: Complemental strand, 17154190 - 17154140
Alignment:
Q  516 tttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggt 566  Q
    ||||||| | ||| ||||||||||| |||||||||||||||||| ||||||    
T  17154190 tttaactatgaaaagacaataaaaatatcacaattgaaataaaactatggt 17154140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 491 - 560
Target Start/End: Complemental strand, 40507700 - 40507630
Alignment:
Q  491 tcatacctgaatccattacccgcactttaactgtaaaaggacaata-aaaacatcacaattgaaataaaat 560  Q
    ||||||| | |||||||| | ||||||||| | ||||| ||||||| |||| |||||||||||||||||||    
T  40507700 tcatacccgtatccattatctgcactttaattataaaaagacaataaaaaatatcacaattgaaataaaat 40507630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 568
Target Start/End: Complemental strand, 38958725 - 38958672
Alignment:
Q  515 ctttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtcc 568  Q
    |||||||| | ||| ||||||||||||||||||||| |||||||| || |||||    
T  38958725 ctttaactatgaaaagacaataaaaacatcacaattaaaataaaactacggtcc 38958672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 435 - 617
Target Start/End: Original strand, 20216192 - 20216374
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||| |||| ||||||| |||||||||| ||||||  |||||||| | || |||||||||||||  || | ||| |||||    
T  20216192 cctcgtgggcaacaacttt-agtgcccttccccatatcttatgggcacttaagtgcccatacctgcacccgttacccgcactttctctatgaaaagacaa 20216290  T
Q  535 t-aaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    | |||||||||||||||||||||||| |||| |||       || ||||||||| ||||||||||||  ||||| |||||||||    
T  20216291 taaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaatagtacgaatcgtagtatttagc 20216374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 435 - 617
Target Start/End: Original strand, 20235790 - 20235972
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||| |||| ||||||| |||||||||| ||||||  |||||||| | || |||||||||||||  || | ||| |||||    
T  20235790 cctcgtgggcaacaacttt-agtgcccttccccatatcttatgggcacttaagtgcccatacctgcacccgttacccgcactttctctatgaaaagacaa 20235888  T
Q  535 t-aaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    | |||||||||||||||||||||||| |||| |||       || ||||||||| ||||||||||||  ||||| |||||||||    
T  20235889 taaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaatagtacgaatcgtagtatttagc 20235972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 474 - 567
Target Start/End: Original strand, 6109645 - 6109738
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtc 567  Q
    |||||| ||||||||| ||||||| | | |||||||||||||||||||| | ||| ||||||||||| |||||||||||||||||| |||||||    
T  6109645 tatgggtacctaagtgctcatacccgcacccattacccgcactttaactatgaaaagacaataaaaatatcacaattgaaataaaactatggtc 6109738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 435 - 617
Target Start/End: Original strand, 859487 - 859669
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggac-a 533  Q
    ||||||| ||||||| ||| ||||||||| ||||||   |||||||||||||||| ||||||| | | |||||||||||| ||||||| | ||| ||| |    
T  859487 cctcgtgggcaacaacttt-agtgtccttccccataccctatgggcacctaagtgctcatacccgcacccattacccgcattttaactatgaaaagacaa 859585  T
Q  534 ataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    | ||||| | |||||||||||||||| |||| |||       |||||||||||| |||||||| ||   ||||| |||||||||    
T  859586 aaaaaaaaaccacaattgaaataaaactatgatccaaaaaatttcaaatcaacttataaaataatatgaatcgtagtatttagc 859669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 460 - 566
Target Start/End: Original strand, 25500155 - 25500261
Alignment:
Q  460 cctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||| ||||||  ||||||| |||||||||  |||||| | | |||||||| ||||||||| | | ||| ||||||||||||||||||||||||||||||    
T  25500155 ccttccccataccttatgggtacctaagtgcccatacccgcacccattacctgcactttaaatatgaaaagacaataaaaacatcacaattgaaataaaa 25500254  T
Q  560 ttatggt 566  Q
     ||||||    
T  25500255 ctatggt 25500261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 474 - 559
Target Start/End: Complemental strand, 2621046 - 2620961
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||| | |||||||  |||||||| | |||||||||||||||||||| | ||| || |||||||||||||||||||||||||||    
T  2621046 tatgggtatctaagtgcccatacctgcacccattacccgcactttaactatgaaaagataataaaaacatcacaattgaaataaaa 2620961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 435 - 617
Target Start/End: Original strand, 221968 - 222151
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggac-- 532  Q
    ||||||| ||||||| ||| ||||||||| ||||||   |||||||||||||||| ||||||| | | |||||||||||| ||||||| | ||| |||      
T  221968 cctcgtgggcaacaacttt-agtgtccttccccataccctatgggcacctaagtgctcatacccgcacccattacccgcattttaactatgaaaagacaa 222066  T
Q  533 aataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    || ||||| | |||||||||||||||| |||| |||       |||||||||||| |||||||| ||   ||||| |||||||||    
T  222067 aaaaaaaaaaccacaattgaaataaaactatgatccaaaaaatttcaaatcaacttataaaataatatgaatcgtagtatttagc 222151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 435 - 617
Target Start/End: Original strand, 691123 - 691306
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggac-- 532  Q
    ||||||| ||||||| ||| ||||||||| ||||||   |||||||||||||||| ||||||| | | |||||||||||| ||||||| | ||| |||      
T  691123 cctcgtgggcaacaacttt-agtgtccttccccataccctatgggcacctaagtgctcatacccgcacccattacccgcattttaactatgaaaagacaa 691221  T
Q  533 aataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    || ||||| | |||||||||||||||| |||| |||       |||||||||||| |||||||| ||   ||||| |||||||||    
T  691222 aaaaaaaaaaccacaattgaaataaaactatgatccaaaaaatttcaaatcaacttataaaataatatgaatcgtagtatttagc 691306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 435 - 617
Target Start/End: Original strand, 735591 - 735774
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggac-- 532  Q
    ||||||| ||||||| ||| ||||||||| ||||||   |||||||||||||||| ||||||| | | |||||||||||| ||||||| | ||| |||      
T  735591 cctcgtgggcaacaacttt-agtgtccttccccataccctatgggcacctaagtgctcatacccgcacccattacccgcattttaactatgaaaagacaa 735689  T
Q  533 aataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    || ||||| | |||||||||||||||| |||| |||       |||||||||||| |||||||| ||   ||||| |||||||||    
T  735690 aaaaaaaaaaccacaattgaaataaaactatgatccaaaaaatttcaaatcaacttataaaataatatgaatcgtagtatttagc 735774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 503 - 567
Target Start/End: Complemental strand, 19643570 - 19643506
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtc 567  Q
    |||||||||||||||||||| | ||| ||||||||||||||||||||||||| |||| |||||||    
T  19643570 ccattacccgcactttaactatgaaaagacaataaaaacatcacaattgaaaaaaaactatggtc 19643506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 504 - 621
Target Start/End: Original strand, 43239235 - 43239352
Alignment:
Q  504 cattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacaca 603  Q
    ||||||| ||||||||||| | ||| || |||||||| |||||||||||| |||||||||||| |       |||||| ||||||||||||||||||  |    
T  43239235 cattacctgcactttaactatgaaaagataataaaaatatcacaattgaactaaaattatggttcagaaaatttcaaaccaactcataaaatagtacgaa 43239334  T
Q  604 tcgtggtatttagcaaaa 621  Q
    | |||||||||| |||||    
T  43239335 ttgtggtatttaacaaaa 43239352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 503 - 566
Target Start/End: Complemental strand, 24891474 - 24891411
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggt 566  Q
    |||||||||||||||||||| | ||| ||||||||||| |||||||||||||||||| ||||||    
T  24891474 ccattacccgcactttaactatgaaaagacaataaaaatatcacaattgaaataaaactatggt 24891411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 503 - 616
Target Start/End: Complemental strand, 26561284 - 26561173
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacac 602  Q
    ||||||| |||||||||||| | ||| ||||||||||||||||||||||| |||||| ||||||||       || |||| ||||||||||||||||||     
T  26561284 ccattacacgcactttaactatgaaaagacaataaaaacatcacaattgatataaaactatggtcc--aattttttaaattaactcataaaatagtacaa 26561187  T
Q  603 atcgtggtatttag 616  Q
    |||||  |||||||    
T  26561186 atcgtaatatttag 26561173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 503 - 599
Target Start/End: Original strand, 43511244 - 43511340
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagta 599  Q
    |||||| | ||||||||||| | ||| ||||||||||| || |||||||||||||||||||||| |       ||||||||||||||||||||||||    
T  43511244 ccattatctgcactttaactatgaaaagacaataaaaatataacaattgaaataaaattatggttcaaattttttcaaatcaactcataaaatagta 43511340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 452 - 598
Target Start/End: Original strand, 7580058 - 7580203
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa--catcacaat 549  Q
    ||||||| |||| ||||||   ||||||||||||||||  |||||| | | ||||||||||||   ||||| | ||| |||||||||||  |||||||||    
T  7580058 tttagtgcccttccccataccctatgggcacctaagtgcccatacccgcacccattacccgca---taactatgaaaagacaataaaaaagcatcacaat 7580154  T
Q  550 tgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagt 598  Q
    |||||||||| |||| |||       |||||||||||||||||||||||    
T  7580155 tgaaataaaaatatgatccaaaaaatttcaaatcaactcataaaatagt 7580203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 474 - 559
Target Start/End: Complemental strand, 2472366 - 2472281
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||| || ||||||  |||||| | |||||| ||||| ||||||||| | ||| ||||||||||||||||||||| ||||||||    
T  2472366 tatgggtacataagtgcccatacccgcatccataacccgtactttaactattaaaagacaataaaaacatcacaattaaaataaaa 2472281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 467 - 559
Target Start/End: Complemental strand, 15961764 - 15961671
Alignment:
Q  467 catattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaata-aaaacatcacaattgaaataaaa 559  Q
    |||||| |||||||||||| |||  ||||| || | |||||||||||| ||||| | ||||| ||||||| |||||||||||||| ||||||||    
T  15961764 catattctatgggcacctacgtgcccatacatgtacccattacccgcattttaattataaaaagacaataaaaaacatcacaattaaaataaaa 15961671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 452 - 599
Target Start/End: Original strand, 38020049 - 38020198
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa--catcacaat 549  Q
    ||||||| |||| ||||||   ||||||||||||||||  |||||| | | |||||||||||| ||||||| | ||| |||||||||||  || |||||     
T  38020049 tttagtgcccttccccataccctatgggcacctaagtgtccatacccgcacccattacccgcagtttaactctgaaaagacaataaaaaagcaccacaac 38020148  T
Q  550 tgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagta 599  Q
    ||||||| || |||  |||       ||||||||||||||||||||||||    
T  38020149 tgaaatacaactattatccagaaaatttcaaatcaactcataaaatagta 38020198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 415 - 617
Target Start/End: Original strand, 15542100 - 15542302
Alignment:
Q  415 tttgtaaaaaataattgtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgca 514  Q
    ||||||||||||  ||||| |||| || | ||||| ||| ||||||||| | ||||| |||||||||||||||||  ||||||   | |||||||| |||    
T  15542100 tttgtaaaaaatgtttgtaccctcatgggtaacaacttt-agtgtcctt-ctcatatcttatgggcacctaagtgcccatacccatacccattacctgca 15542197  T
Q  515 ctttaactgtaaaaggacaat--aaaaacatcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtat 612  Q
    |||||| | ||||| | ||||  ||||||||||||||| |||||||| || | |||       || ||| ||||||||||||||||| | || || ||||    
T  15542198 ctttaattataaaaaggcaataaaaaaacatcacaattaaaataaaactaagatccaatttttttaaaagcaactcataaaatagtagaaattgtagtat 15542297  T
Q  613 ttagc 617  Q
    |||||    
T  15542298 ttagc 15542302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 503 - 566
Target Start/End: Original strand, 25419319 - 25419382
Alignment:
Q  503 ccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggt 566  Q
    |||||||| ||||||||||| | ||| || ||||||||||||||| ||||||||||| ||||||    
T  25419319 ccattacctgcactttaactatgaaaagaaaataaaaacatcacagttgaaataaaactatggt 25419382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 565
Target Start/End: Original strand, 45553100 - 45553181
Alignment:
Q  484 taagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatgg 565  Q
    |||||| | ||||| | |||||||||| ||| ||||||| | ||| ||||| || ||||||||||||||||||||| |||||    
T  45553100 taagtgcttatacccgcatccattacctgcattttaactatgaaaagacaaaaagaacatcacaattgaaataaaactatgg 45553181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 452 - 559
Target Start/End: Complemental strand, 37226880 - 37226772
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaata-aaaacatcacaatt 550  Q
    ||||||||| || ||||||   ||||||||||||||||  |||||  | ||| |||| ||||||||||| |  |||| ||||||| |||||||||| |||    
T  37226880 tttagtgtcattccccataccctatgggcacctaagtgcccatactcgtatctattatccgcactttaattacaaaaagacaataaaaaacatcacgatt 37226781  T
Q  551 gaaataaaa 559  Q
    |||||||||    
T  37226780 gaaataaaa 37226772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 474 - 556
Target Start/End: Original strand, 30801271 - 30801352
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaata 556  Q
    |||||| |||||||||  |||||| | | ||||||||  |||||||||| | ||| |||||| ||||||||||||||||||||    
T  30801271 tatgggtacctaagtgtccatacccgtacccattacca-cactttaactatgaaaagacaatgaaaacatcacaattgaaata 30801352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 449 - 600
Target Start/End: Original strand, 250156 - 250309
Alignment:
Q  449 aattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaa-acatcaca 547  Q
    ||||||||||||||| ||||||  ||||||||  ||||||  |||||| || | |||||| ||||||||||||| | ||| |||||||||| | ||||||    
T  250156 aattttagtgtccttccccataccttatgggcgtctaagtactcatacatgtacccattatccgcactttaactatcaaaagacaataaaatatatcaca 250255  T
Q  548 attg-aaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtac 600  Q
    |||| |||||||||||||||||       || ||||||||||||||||||||||    
T  250256 attgaaaataaaattatggtcccaaaatttttaaatcaactcataaaatagtac 250309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 504 - 567
Target Start/End: Original strand, 12429483 - 12429546
Alignment:
Q  504 cattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtc 567  Q
    ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||    
T  12429483 cattacccgcactttaactatgaaaagacaataaaaacatcacaattgaaataaaattatggtc 12429546  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 358 - 564
Target Start/End: Original strand, 6937958 - 6938161
Alignment:
Q  358 gggatggcaatggtaactctatgggcagggta-tacaccgccctatcccacacccgcatttgtaaaaaataattgtatcctcgtgtgcaacaaattttag 456  Q
    |||||||||||||  || ||||||| |||||| ||||  ||||   |||| ||||||||||||||||| ||   ||| || |||| ||||| || |||||    
T  6937958 gggatggcaatgggtaccctatgggtagggtactacaatgcccatccccatacccgcatttgtaaaaattacccgtacccccgtgggcaac-aactttag 6938056  T
Q  457 tgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaata 556  Q
    || |||| ||||||   |||||| |||||||||  |||||| | | ||   ||||||||||||||| | ||| ||||||||||||||||||||||||| |    
T  6938057 tgcccttccccataccctatgggtacctaagtgcccatacccgcaccc---acccgcactttaactatgaaaagacaataaaaacatcacaattgaaaca 6938153  T
Q  557 aaattatg 564  Q
    ||| ||||    
T  6938154 aaactatg 6938161  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 452 - 568
Target Start/End: Original strand, 28769886 - 28770002
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattg 551  Q
    ||||||||| || |||||||  |||||| |||||||||  |||||| | | ||||||||||||||||| || | |||    |||||||| || |||||||    
T  28769886 tttagtgtcattccccatatcctatgggtacctaagtgtccatacccgcacccattacccgcactttagctatgaaaaaggaataaaaaaattacaattg 28769985  T
Q  552 aaataaaattatggtcc 568  Q
    |||||||| ||||||||    
T  28769986 aaataaaactatggtcc 28770002  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 474 - 564
Target Start/End: Complemental strand, 24447205 - 24447114
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaa-catcacaattgaaataaaattatg 564  Q
    ||||||||| |||||| |||||||   | ||||||||||||||||  || | ||| ||||||||||| ||||||||||||||||||| ||||    
T  24447205 tatgggcacttaagtgctcatacccccacccattacccgcactttctctatgaaaagacaataaaaaacatcacaattgaaataaaactatg 24447114  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 435 - 599
Target Start/End: Complemental strand, 6338054 - 6337889
Alignment:
Q  435 cctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaa 534  Q
    ||||||| ||||||| ||| |||| |||| ||||||   |||||||||||||| | ||||||| | | | |||||||||| |||||   | ||| |||||    
T  6338054 cctcgtgggcaacaacttt-agtgcccttccccataccctatgggcacctaagagctcatacccgcaccaattacccgcagtttaatactgaaaagacaa 6337956  T
Q  535 taaaaa--catcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagta 599  Q
    ||||||  || ||||| ||||||| ||||||| |||       ||||||||||||||||||||||||    
T  6337955 taaaaaagcaccacaactgaaatacaattatgatccagaaaatttcaaatcaactcataaaatagta 6337889  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 564
Target Start/End: Complemental strand, 1221794 - 1221703
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaata-aaaacatcacaattgaaataaaattatg 564  Q
    ||||||||| |||||| |||||||   | ||||||||||||||||  || | ||| ||||||| |||| |||||||||||||||||| ||||    
T  1221794 tatgggcacttaagtgctcatacccccacccattacccgcactttctctatgaaaagacaataaaaaatatcacaattgaaataaaactatg 1221703  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 474 - 559
Target Start/End: Complemental strand, 20691669 - 20691583
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggac-aataaaaacatcacaattgaaataaaa 559  Q
    |||||| |||||||||  |||||| | | |||||||||||||||||||| | |||  || || ||||||||||||| ||||||||||    
T  20691669 tatgggtacctaagtgcccatacccgcacccattacccgcactttaactatgaaaaaacaaaaaaaaacatcacaaatgaaataaaa 20691583  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 559
Target Start/End: Original strand, 31070826 - 31070910
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaa 559  Q
    |||||| |||||||||  |||||| | | |||||||||||||||||||| | |||  |||| |||||||||| || ||||||||||    
T  31070826 tatgggtacctaagtgcccatacccgcacccattacccgcactttaactatgaaaaaacaa-aaaaacatcataaatgaaataaaa 31070910  T

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Target: scaffold0323 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 618 - 709
Target Start/End: Original strand, 10987 - 11078
Alignment:
Q  618 aaaaggttgtcgtggagttggagtttagctaggctgaaaattcaaccttgtttgttctacgagtggaggtggaatccaaagtggtgccttgg 709  Q
    |||||||| ||||||| |||||||||| | ||||||||||||||||| ||||||||||| || ||| |||||||||  ||||||| ||||||    
T  10987 aaaaggttatcgtggatttggagtttatcgaggctgaaaattcaaccgtgtttgttctatgaatggcggtggaatctgaagtggtcccttgg 11078  T

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Target: scaffold0005 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 430 - 564
Target Start/End: Complemental strand, 222089 - 221955
Alignment:
Q  430 tgtatcctcgtgtgcaacaaattttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaag 529  Q
    |||||||||||| | ||||| ||| |||||| ||  |||||  |||||| |||||||||| ||||||| | |||||||||||||||||||| | |||||     
T  222089 tgtatcctcgtgggtaacaacttt-agtgtcattctccataccttatggacacctaagtgctcatacccgtatccattacccgcactttaattataaaac 221991  T
Q  530 gacaata-aaaacatcacaattgaaataaaattatg 564  Q
    ||||||| |||| ||||| |||||||||||| ||||    
T  221990 gacaataaaaaatatcaccattgaaataaaactatg 221955  T

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Target: scaffold0602 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0602
Description:

Target: scaffold0602; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 452 - 613
Target Start/End: Original strand, 5009 - 5170
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattg 551  Q
    ||||||||| |||| ||||| ||||||| | || |||   |||||| | |||||||| |  |||||||| | | ||| ||||||||||| ||||||||||    
T  5009 tttagtgtcatttctcatatcttatgggtaacttagttcccatacccgcatccattatctacactttaattatgaaaagacaataaaaatatcacaattg 5108  T
Q  552 aaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatt 613  Q
    || |||||| ||||| |       |||||||||||||||||||||||||  ||||| |||||    
T  5109 aactaaaatcatggttcaaaaattttcaaatcaactcataaaatagtacgaatcgtagtatt 5170  T

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Target: scaffold0312 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 492 - 568
Target Start/End: Complemental strand, 5938 - 5862
Alignment:
Q  492 catacctgaatccattacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatggtcc 568  Q
    |||||||| | ||||||||| |||||||||| | ||| ||||||||||||||||||| |||||||||| || |||||    
T  5938 catacctgcacccattacccacactttaactatgaaaagacaataaaaacatcacaaatgaaataaaactacggtcc 5862  T

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Target: scaffold0249 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 452 - 599
Target Start/End: Original strand, 20034 - 20182
Alignment:
Q  452 tttagtgtcctttcccatattttatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaat-aaaaacatcacaatt 550  Q
    ||||||| |||| ||||||| ||||||  || ||||||  |||||| | | |||||||||||| ||||||  | ||| |||||| |||||| ||||||||    
T  20034 tttagtgcccttccccatatcttatggatacttaagtgtccatacccgcacccattacccgcattttaaccatgaaaagacaattaaaaacgtcacaatt 20133  T
Q  551 gaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagta 599  Q
    |||||||||||||| |||       || ||||||||| |||||||||||    
T  20134 gaaataaaattatgatccaaaaaattttaaatcaactaataaaatagta 20182  T

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Target: scaffold0056 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 506 - 564
Target Start/End: Complemental strand, 72646 - 72589
Alignment:
Q  506 ttacccgcactttaactgtaaaaggacaataaaaacatcacaattgaaataaaattatg 564  Q
    |||||||| |||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  72646 ttacccgcgctttaactatgaaag-acaataaaaacatcacaattgaaataaaattatg 72589  T

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Target: scaffold0242 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 617
Target Start/End: Complemental strand, 13137 - 13026
Alignment:
Q  507 tacccgcactttaactgtaaaaggacaataaaaa-catcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatc 605  Q
    |||||||||||||||  | ||| ||||||||||| ||  |||||||||||||||||||| |||       |||||||||||| ||||||||||| |  ||    
T  13137 tacccgcactttaaccatgaaaagacaataaaaaacactacaattgaaataaaattatgatccaaaaaatttcaaatcaactaataaaatagtataagtc 13038  T
Q  606 gtggtatttagc 617  Q
    || |||||||||    
T  13037 gtagtatttagc 13026  T

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Target: scaffold0242; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 617
Target Start/End: Complemental strand, 21972 - 21861
Alignment:
Q  507 tacccgcactttaactgtaaaaggacaataaaaa-catcacaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatc 605  Q
    |||||||||||||||  | ||| ||||||||||| ||  |||||||||||||||||||| |||       |||||||||||| ||||||||||| |  ||    
T  21972 tacccgcactttaaccatgaaaagacaataaaaaacactacaattgaaataaaattatgatccaaaaaatttcaaatcaactaataaaatagtataagtc 21873  T
Q  606 gtggtatttagc 617  Q
    || |||||||||    
T  21872 gtagtatttagc 21861  T

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Target: scaffold0160 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 617
Target Start/End: Complemental strand, 26211 - 26066
Alignment:
Q  474 tatgggcacctaagtggtcatacctgaatccattacccgcactttaactgtaaaaggacaataaaaacat--cacaattgaaataaaattatggtccnnn 571  Q
    ||||| |||||||||| ||||| | | |  ||||||||||| ||||||| | ||| ||||||||||| |   |||||||||||||||| |||| |||       
T  26211 tatggtcacctaagtgctcataaccgcactcattacccgcattttaactatgaaaagacaataaaaaaaagccacaattgaaataaaactatgatccaaa 26112  T
Q  572 nnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
        ||||||||||||||||||||| ||   ||||| |||||||||    
T  26111 aaatttcaaatcaactcataaaataatatgaatcgtagtatttagc 26066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0938 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0938
Description:

Target: scaffold0938; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 617
Target Start/End: Original strand, 561 - 633
Alignment:
Q  545 acaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    |||||||||||||||||||| |||       |||||||||||| ||||||||||| | ||||| |||||||||    
T  561 acaattgaaataaaattatgatccaaaaaatttcaaatcaactaataaaatagtataaatcgtagtatttagc 633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 617
Target Start/End: Complemental strand, 23891 - 23819
Alignment:
Q  545 acaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    |||||||||||||||||||| |||       |||||||||||| ||||||||||| | ||||| |||||||||    
T  23891 acaattgaaataaaattatgatccaaaaaatttcaaatcaactaataaaatagtataaatcgtagtatttagc 23819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 617
Target Start/End: Complemental strand, 34059 - 33987
Alignment:
Q  545 acaattgaaataaaattatggtccnnnnnnnttcaaatcaactcataaaatagtacacatcgtggtatttagc 617  Q
    |||||||||||||||||||| |||       |||||||||||| ||||||||||| | ||||| |||||||||    
T  34059 acaattgaaataaaattatgatccaaaaaatttcaaatcaactaataaaatagtataaatcgtagtatttagc 33987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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