View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4976-Insertion-4 (Length: 843)
Name: NF4976-Insertion-4
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4976-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 8 - 778
Target Start/End: Complemental strand, 24560683 - 24559910
Alignment:
| Q |
8 |
tctccctagaggaagaagaatgtaagaactcaatgcaatcttcaacagtttcagctcgatgtgaatcggtgaggtccgataccgatcgcgaccttaccaa |
107 |
Q |
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| T |
24560683 |
tctccctagatgaagaagaatgtaagaactcaatgcaatcttcaacagtttcagctcgatgtgaatcggtgaggtccgataccgatcgcgaccttaccaa |
24560584 |
T |
|
| Q |
108 |
agtagatgaagaagaaaccttcctagaggatcttcttttcatagaaacacttcttatggaacttgccacttttgttcctagctgcactaggaatttcaaa |
207 |
Q |
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| T |
24560583 |
agtagatgaagaagaaaccttcctagaggatcttcttttcatagaaacacttcttatggaacttgccacttttgttcctagctgcactaggaatttcaaa |
24560484 |
T |
|
| Q |
208 |
ggtgatgacaatcttgtttgttctttggttaatttgaaattaccacttccaatttccctcttcatgagaaaaaatgttggtgtgtcattgacattaggac |
307 |
Q |
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| T |
24560483 |
ggtgatgacaatcttgtttgttctttggttaatttgaaattaccacttccaatttctctcttcttgagaaaaaatgttggtatgtcattgacattaggac |
24560384 |
T |
|
| Q |
308 |
taaagcatacccttttgcttttaatggacattttcaagaactataggagaattctaattttctaatttggnnnnnnnnnnnggtgttattttagtttttg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24560383 |
taaagcatacccttttgcttttaatggacattttcaagaactataggagaattctaattttctaatttggaaaaaaaaaaaagtgttattttagtttttg |
24560284 |
T |
|
| Q |
408 |
tgtttggtttgtgaagggaaagagaaacagaatatgcaaaggggagataggtttgaagaggtagagttagaatgtttgttagggaggatagttggatggc |
507 |
Q |
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| T |
24560283 |
tgtttggtttgtgaagggaaagagaaacagaatatgcaaaggggagataggtttgaagaggtagagttggaatgtttgttagggaggatagttggatggc |
24560184 |
T |
|
| Q |
508 |
aagagtatatataaggacaaaaagctacaaagtgaatatag-aaaaggatacactagaattaaaattaattatccaatgtc-nnnnnnncctcttaagta |
605 |
Q |
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| T |
24560183 |
aagagtatatataaggacaaaaagctacaaagtgaatatagaaaaaggatatactagaattaaaattgattatccaatgtcttttttttcctcttaagta |
24560084 |
T |
|
| Q |
606 |
tgctagtgtgacagtttatatgaactattatattatatgttttcattatt----attcatagatta--acaattgtttgtgttaaacaaaattacatttt |
699 |
Q |
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| T |
24560083 |
tgctagtgtgacagtttatatgaac-----tattatatgttttcattattattaattaatagattaacacaattgtttgtgttaaacaaaattacatttt |
24559989 |
T |
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| Q |
700 |
gagttaattctgccttccgcctagtatagaatttctctccctaagagataagcttgaaacttaatttcttctcttcctc |
778 |
Q |
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| T |
24559988 |
gagttatttctgtctttcgcctagcatagaatttctctctctgagaaataagtttagaacttaatttcttctctccctc |
24559910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 3630231 - 3630390
Alignment:
| Q |
14 |
tagaggaagaagaatgtaagaactcaatgcaatcttcaacagtttcagctcgatgtgaatcggtgagg---tccgataccgatcgcgaccttaccaaagt |
110 |
Q |
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|||||||||||||||| |||||||| ||||||||||| |||| || ||| || ||||||||||||||| || |||| || | ||||||||| |||| |
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| T |
3630231 |
tagaggaagaagaatgcaagaactcgatgcaatcttctacagctttagcacggtgtgaatcggtgaggtgatctgataatgaatgagaccttaccgaagt |
3630330 |
T |
|
| Q |
111 |
agatgaagaagaaaccttcctagaggatcttcttttcatagaaacacttcttatggaacttgc |
173 |
Q |
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||| ||||||||||||||||||||||||||| ||| ||||||| |||||| |||||||| |
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| T |
3630331 |
ggat---gaagaaaccttcctagaggatcttcttctcaaagaaacagctcttatagaacttgc |
3630390 |
T |
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