View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4976-Insertion-5 (Length: 843)

Name: NF4976-Insertion-5
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4976-Insertion-5
NF4976-Insertion-5
[»] chr8 (4 HSPs)
chr8 (8-839)||(26494489-26495320)
chr8 (393-597)||(26506901-26507105)
chr8 (16-299)||(26506542-26506825)
chr8 (412-509)||(41127308-41127405)
[»] chr5 (2 HSPs)
chr5 (412-527)||(15176287-15176402)
chr5 (133-200)||(15176593-15176660)
[»] chr2 (14 HSPs)
chr2 (244-357)||(2327134-2327247)
chr2 (412-528)||(2330996-2331112)
chr2 (415-528)||(2303729-2303842)
chr2 (412-528)||(2327281-2327397)
chr2 (235-299)||(2330840-2330904)
chr2 (253-357)||(2351164-2351268)
chr2 (412-528)||(2310444-2310560)
chr2 (412-511)||(2321428-2321527)
chr2 (235-357)||(2303570-2303692)
chr2 (412-528)||(2294113-2294229)
chr2 (235-287)||(2321272-2321324)
chr2 (126-200)||(2293848-2293922)
chr2 (548-597)||(2294246-2294295)
chr2 (548-597)||(2310577-2310626)
[»] chr4 (1 HSPs)
chr4 (412-458)||(55017087-55017133)


Alignment Details
Target: chr8 (Bit Score: 776; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 776; E-Value: 0
Query Start/End: Original strand, 8 - 839
Target Start/End: Original strand, 26494489 - 26495320
Alignment:
Q  8 gaactgacacaacttcaactacactagagtgggttatggcgaatttggtgaaagacaaacacgtgcaacagatgctagtggaggaaattgaagaggtggt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494489 gaactgacacaacttcaactacactagagtgggttatggcgaatttggtgaaagacaaacacgtgcaacagatgctagtggaggaaattgaagaggtggt 26494588  T
Q  108 tggtgaaagagaagaaagggaagtgagagaggaagatttgtagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcctccaact 207  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  26494589 tggtgaaagagaggaaagggaagtgagagaggaagatttggagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcctcctact 26494688  T
Q  208 cactacacaattccacgtgtagtgacggaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494689 cactacacaattccacgtgtagtgacggaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggat 26494788  T
Q  308 taaatccaacggtttgggaggatcctacggtgtttaagccagagaggtttctaaaagatgcaaaaaatagaaacgaatttgacgcatttgatgttagggg 407  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494789 tagatccaacggtttgggaggatcctacggtgtttaagccagagaggtttctaaaagatgcaaaaaatagaaacgaatttgacgcatttgatgttagggg 26494888  T
Q  408 tataaaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494889 tataaaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttg 26494988  T
Q  508 gttttgaactttgagtggaagacttcattaccaggaagtaatgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatccactagaaaatc 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||    
T  26494989 gttttgaactttgagtggaagacttcattaccaggaagtaatgttgatttgacagaaaaacaggaatttacaatggtgatgaaatatccactagaagctc 26495088  T
Q  608 aaatttctctcaggaactagattcaacaattggagacattttataggacatgatcatgattgtgcaccattgcaaagtaaaacaaaaagtatatcaacca 707  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26495089 aaatttctctcaggaattagattcaacaattggagacattttataggacatgatcaggattgtgcaccattgcaaagtaaaacaaaaagtatatcaacca 26495188  T
Q  708 taaaacaatggtgcaaacacatttagatataaatgatacattgatgccatagagcaatgatacaaatatagcaatgtaaggttagtttacaacatcaatc 807  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26495189 taaaacaatggtgcaaacacatttagatataaatgacacattgatgccatagagcaatgatacaaatatagcaatgtatggttagtttacaacatcaatc 26495288  T
Q  808 aactatggtgtaaatatatgtgtatatctgtg 839  Q
    ||| ||||||||||||||||||| | ||||||    
T  26495289 aaccatggtgtaaatatatgtgtgtgtctgtg 26495320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 393 - 597
Target Start/End: Original strand, 26506901 - 26507105
Alignment:
Q  393 atttgatgttaggggtataaaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatac 492  Q
    |||||||||||  |||  ||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |||    
T  26506901 atttgatgttacaggtcaaaatgagataaagatgatgccatttggagcaggaaggaggatttgtcctgcctataacttggcaatgctccatgtagagtac 26507000  T
Q  493 tttgttgctaatttggttttgaactttgagtggaagacttcattaccaggaagtaatgttgatttgacagaaaaacaagaatttacaatggtgatgaaat 592  Q
    |||||  | ||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||||||||||    
T  26507001 tttgtgacaaatttagtttggaactttgaatggaagacttcattaccagaaagtaatgttgatttgtcagaaaaacaggaatttactatggtgatgaaat 26507100  T
Q  593 atcca 597  Q
    |||||    
T  26507101 atcca 26507105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 16 - 299
Target Start/End: Original strand, 26506542 - 26506825
Alignment:
Q  16 acaacttcaactacactagagtgggttatggcgaatttggtgaaagacaaacacgtgcaacagatgctagtggaggaaattgaagaggtggttggtgaaa 115  Q
    |||||||||||| || ||||||||||||||||||||||||| ||| ||||||| |||||||| |   |||| |||||||||| ||  ||  ||||||| |    
T  26506542 acaacttcaactgcattagagtgggttatggcgaatttggtcaaatacaaacatgtgcaacaaagaatagtcgaggaaattggagttgtaattggtgata 26506641  T
Q  116 gagaagaaagggaagtgagagaggaagatttgtagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcctccaactcactacac 215  Q
    |||| ||||| ||||| | ||||||||||||| | || || || ||| | ||||| |||||||| |||||||||||||| || |||||  ||||||||      
T  26506642 gagaggaaagagaagtaaaagaggaagatttggaaaagttaccttatcttaaggcagtgattttagaagggttaaggcgccaccctccttctcactactt 26506741  T
Q  216 aattccacgtgtagtgacggaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcaga 299  Q
    |||||||| || |||||| |||||| |  |||| || |||||||||||||||||||||||||| || |||||||||||||||||    
T  26506742 aattccacatgcagtgaccgaggatgtgatttttaacggttacttggtgcctaaaaatgggacagttaattttatggtggcaga 26506825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 412 - 509
Target Start/End: Original strand, 41127308 - 41127405
Alignment:
Q  412 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggt 509  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||||  ||||| || ||  |||||||||| ||||||||||| |||||||||||    
T  41127308 aaagagataaagatgatgccgtttggagttgggaggagaatttgtcctggatataatttagctttgctccatttggaatactttgtggctaatttggt 41127405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 412 - 527
Target Start/End: Complemental strand, 15176402 - 15176287
Alignment:
Q  412 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 511  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||| ||||   || ||| || | || || |||||||||||||| ||||| ||||    
T  15176402 aaagagataaagatgatgccatttggagcagggaggagaatgtgtcctggctatggtttagcattgttgcacttggaatactttgttgccaattttgttt 15176303  T
Q  512 tgaactttgagtggaa 527  Q
    |||| |||||||||||    
T  15176302 tgaattttgagtggaa 15176287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 15176660 - 15176593
Alignment:
Q  133 agagaggaagatttgtagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcc 200  Q
    ||||| ||||||||| | ||| |||||||| | || ||||| |||||||||||| |||||||||||||    
T  15176660 agagaagaagatttgaaaaaaatgccatatcttaaagctgtaattttggaagggctaaggcgtcatcc 15176593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 244 - 357
Target Start/End: Original strand, 2327134 - 2327247
Alignment:
Q  244 gttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattaaatccaacggtttgggaggatcctacggtgttta 343  Q
    |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| || || ||  ||||    |||||||||||||| | || |||||    
T  2327134 gttttgaatggttatttggtgcctaaaaatgggacggtgaatttcatggtggcagagatggggttggatcctcgtgtttgggaggatccaatggagttta 2327233  T
Q  344 agccagagaggttt 357  Q
    ||||||| ||||||    
T  2327234 agccagaaaggttt 2327247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 412 - 528
Target Start/End: Original strand, 2330996 - 2331112
Alignment:
Q  412 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 511  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||||||  ||||| || ||  |||| ||||| ||||| ||||| |||||||||||||    
T  2330996 aaagagataaagatgatgccatttggagctgggaggagaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggttt 2331095  T
Q  512 tgaactttgagtggaag 528  Q
     ||| || || ||||||    
T  2331096 ggaatttcgattggaag 2331112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 415 - 528
Target Start/End: Original strand, 2303729 - 2303842
Alignment:
Q  415 gagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttga 514  Q
    |||||||||||||||||||||| ||| |  ||||| |||||||||||   ||| || ||  |||||||||||||||| ||||| ||||||||||||| ||    
T  2303729 gagataaagatgatgccgtttgaagctgaaaggagaatttgtcctgcacttaatttagctttgctccatttagaatattttgtggctaatttggtttgga 2303828  T
Q  515 actttgagtggaag 528  Q
    | || || ||||||    
T  2303829 atttcgattggaag 2303842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 412 - 528
Target Start/End: Original strand, 2327281 - 2327397
Alignment:
Q  412 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 511  Q
    |||||||| |||||||||||||||||||| || ||||| |||||||| |  ||||| || ||  | |||||||| ||||| ||||| |||||||||||||    
T  2327281 aaagagatcaagatgatgccgtttggagctggtaggagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggttt 2327380  T
Q  512 tgaactttgagtggaag 528  Q
     ||| || || ||||||    
T  2327381 ggaatttcgattggaag 2327397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 2330840 - 2330904
Alignment:
Q  235 gaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcaga 299  Q
    |||||| | |||||||||||||| |||||||||||| ||||||| |||||||||||||| |||||    
T  2330840 gaggatgtggttttgaatggttatttggtgcctaaagatgggacggtgaattttatggttgcaga 2330904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 2351164 - 2351268
Alignment:
Q  253 ggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattaaatccaacggtttgggaggatcctacggtgtttaagccagaga 352  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||| || || |   ||||    |||||||||||||| | || ||||||||||||||    
T  2351164 ggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtgtttgggaggatccaatggagtttaagccagaga 2351263  T
Q  353 ggttt 357  Q
    |||||    
T  2351264 ggttt 2351268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 412 - 528
Target Start/End: Original strand, 2310444 - 2310560
Alignment:
Q  412 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 511  Q
    ||||||||||||||||||||||||||||| || || || |||||||| |    ||| || ||  |||||||||| ||||| ||||| |||||||||||||    
T  2310444 aaagagataaagatgatgccgtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggttt 2310543  T
Q  512 tgaactttgagtggaag 528  Q
     ||| || || ||||||    
T  2310544 ggaatttcgattggaag 2310560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 412 - 511
Target Start/End: Original strand, 2321428 - 2321527
Alignment:
Q  412 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 511  Q
    ||||||||||||||||||||||||||||| || ||||| |||||||| |    ||| || ||  |||||||||| ||||| ||||| ||||| |||||||    
T  2321428 aaagagataaagatgatgccgtttggagctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggttt 2321527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 235 - 357
Target Start/End: Original strand, 2303570 - 2303692
Alignment:
Q  235 gaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattaaatccaacggtttgggaggatccta 334  Q
    |||||| | |||||||| ||||| |||||||||||||||||||| |||||||| ||| |||| || || || |   ||||    |||||||||||||| |    
T  2303570 gaggatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctggcggagatggggtgggatcctcgtgtttgggaggatccaa 2303669  T
Q  335 cggtgtttaagccagagaggttt 357  Q
     || |||||||||||| ||||||    
T  2303670 tggagtttaagccagaaaggttt 2303692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 412 - 528
Target Start/End: Original strand, 2294113 - 2294229
Alignment:
Q  412 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 511  Q
    ||||||||||||||||||||||||||||| || || || |||||||| |    ||| || ||  |||||||||| ||||| ||||| ||||| |||||||    
T  2294113 aaagagataaagatgatgccgtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggttt 2294212  T
Q  512 tgaactttgagtggaag 528  Q
     ||| || || ||||||    
T  2294213 ggaatttcgattggaag 2294229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 2321272 - 2321324
Alignment:
Q  235 gaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattt 287  Q
    |||||| | |||||||| ||||| |||||||||||||||||||| ||||||||    
T  2321272 gaggatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaattt 2321324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 2293848 - 2293922
Alignment:
Q  126 ggaagtgagagaggaagatttgtagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcc 200  Q
    |||||||| ||||||||| ||| ||||| | |  |||||||||  |||| ||||||||||||| |||||||||||    
T  2293848 ggaagtgaaagaggaagacttgcagaaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatcc 2293922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 597
Target Start/End: Original strand, 2294246 - 2294295
Alignment:
Q  548 atgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca 597  Q
    ||||||||||||| |||| ||||||||| || |||||||||||| |||||    
T  2294246 atgttgatttgacggaaatacaagaattcaccatggtgatgaaaaatcca 2294295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 597
Target Start/End: Original strand, 2310577 - 2310626
Alignment:
Q  548 atgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca 597  Q
    ||||||||||||| |||| ||||||||| || |||||||||||| |||||    
T  2310577 atgttgatttgacggaaatacaagaattcactatggtgatgaaaaatcca 2310626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 412 - 458
Target Start/End: Original strand, 55017087 - 55017133
Alignment:
Q  412 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcc 458  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||    
T  55017087 aaagagatgaagatgatgccgtttggtgctgggaggaggatttgtcc 55017133  T

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