View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4976-Insertion-6 (Length: 800)
Name: NF4976-Insertion-6
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4976-Insertion-6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 166 - 800
Target Start/End: Complemental strand, 24833539 - 24832906
Alignment:
| Q |
166 |
atgttttatttggtgttctttattttcattgacaaattattttgcttagctcggatccatcttctctatatatagatatggaaaccaagtttacgttgat |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
24833539 |
atgttttatttggtgttctttattttcattgacaaattattttgcttagctcggatccaccttctctatatatagatatggaaaccaagtttacgctgat |
24833440 |
T |
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| Q |
266 |
gagctagattctctttatggagattcccgagccaaatggttagattatgaggtatacaccttccaatccttctcaatttcaaatttggctcagattaata |
365 |
Q |
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| T |
24833439 |
gagctagactctctttatggagattcccgagccaaatggttaggttatgaggtacacaccttccaatccttctcaatttcaaatttggctcagattaata |
24833340 |
T |
|
| Q |
366 |
tatgttgcttaaaataatttataatgtttcaatattttatccatgatataggtccactcttgtccatttgcattattgcatgtcagtgcctgcaatagta |
465 |
Q |
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| T |
24833339 |
tatgttgcttaaaataatt-ataatgtttcaatattttatccatgatatacgtccactcttgtccttttgcattattgcatgttagtgcctgcaatagta |
24833241 |
T |
|
| Q |
466 |
attgtttttgtgtctttgacatttgcaatagtgagaatcttagaaaataattcataagtttgacttcaatccatgtagaatagtggctctggatactgct |
565 |
Q |
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| T |
24833240 |
attgtttttgtgtctttgacatttgcaatagtgagaatcttagaaaataattcataagtttgacttcaatccatgtagaatagtggctctggcgactgct |
24833141 |
T |
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| Q |
566 |
tcttttgagatgggtttttcatttgctaacaatgcttcaactcccgactgtttcggcggctactactcctgcaattggtaagctgtgttttataaattga |
665 |
Q |
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| T |
24833140 |
tcttttgagatgagtttttcatttgctaacaatgcttcaactcccgactgtttcggcggctactactcctgcagttggtaagctgtgttttataaattga |
24833041 |
T |
|
| Q |
666 |
aatcatgtttaacgtctgtttttgaggtgtgagaagtgaactgtctttattagtgttatagtggagnnnnnnnnnattctagtttcgtatgtgattcgtt |
765 |
Q |
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| T |
24833040 |
aatcatgtttaatgtctgtttttgaggtgtgagaagtgaactgtctttattagtgttagagtggagtttttttttattttagtttcgtatgtgattcttt |
24832941 |
T |
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| Q |
766 |
tatatctttgattttatattgctgtcaataatgga |
800 |
Q |
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| T |
24832940 |
tatatctttgattttatattgctgtcaataatgga |
24832906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 24833617 - 24833549
Alignment:
| Q |
8 |
gtcactgccatccttttcccttgggttgccagcgtacgaggtccttgctctgtctgaatcatcttctaa |
76 |
Q |
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| T |
24833617 |
gtcactgccatccttttcccttgggttgccagcgtacgaggtccttgctctgtctgaatcatcttctaa |
24833549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 3e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 18187251 - 18186904
Alignment:
| Q |
8 |
gtcactgccatccttttcccttgggttgccagcgtacgaggtccttgctctgtctgaatcatcttctaacttgtctcgctctgatggcatcaggtcagtg |
107 |
Q |
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| T |
18187251 |
gtcactgccatccttttcgcttgggttgccggcatactatgtccttgctttgtctgaatcatcttccaacttgtctcgctatgatggtattaggtcagtg |
18187152 |
T |
|
| Q |
108 |
gcggagaccccatgtaccactctc--tctcttagtccaaatacacacacaactgaacacaatgttttatttggtgttctttattttcattgacaaattat |
205 |
Q |
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|| || ||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| || | || |
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| T |
18187151 |
gctgactccccatgtacccctctcgctctcttcgtccaaa--cacacacaactgaacacaatgttttattttgtgttgtttattttcattgataattcat |
18187054 |
T |
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| Q |
206 |
tttgcttagctcggatccatcttctctatatatagatatggaaaccaagtttacgttgatgagctagattctctttatggagattcccgagccaaatggt |
305 |
Q |
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|||| || ||| || |||| ||||||||||| ||||||||||||||||||||| | ||| |||||| | ||||| ||||| || |||||||||||| ||| |
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| T |
18187053 |
tttgtttggcttgggtccaccttctctatatctagatatggaaaccaagtttatgctgaagagctaaactctctatatggtgaatcccgagccaaagggt |
18186954 |
T |
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| Q |
306 |
tagattatgaggtatacaccttccaatccttctcaatttcaaatttggct |
355 |
Q |
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||| || ||||||| ||||||| |||||||||| ||||||||||| |||| |
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| T |
18186953 |
taggttctgaggtacacacctttcaatccttcttaatttcaaattcggct |
18186904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 18186672 - 18186629
Alignment:
| Q |
354 |
ctcagattaatatatgttgcttaaaataatttataatgtttcaa |
397 |
Q |
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| T |
18186672 |
ctcagattaatatatgttgcttaaagaaatttataatgtttcaa |
18186629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 432 - 492
Target Start/End: Complemental strand, 18186311 - 18186252
Alignment:
| Q |
432 |
tttgcattattgcatgtcagtgcctgcaatagtaattgtttttgtgtctttgacatttgca |
492 |
Q |
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| T |
18186311 |
tttgcattattgcatgttagtgcctgcaatagtaatcg-ttctctttctttgacatttgca |
18186252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 34669475 - 34669424
Alignment:
| Q |
358 |
gattaatatatgttgcttaaaataatttataatgtttcaatattttatccat |
409 |
Q |
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| T |
34669475 |
gattaatatatgttgcttaaagaaatttataatgtttcaagattttatccat |
34669424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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