View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4976-Insertion-7 (Length: 616)
Name: NF4976-Insertion-7
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4976-Insertion-7 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 200 - 616
Target Start/End: Complemental strand, 2095214 - 2094800
Alignment:
| Q |
200 |
atctctaccaaatatcatattcctctccttttaggcttcattagttttgccatcaaaacaaactcaaagtttaccctccattatatgatttgaaattaga |
299 |
Q |
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| T |
2095214 |
atctctaccaaatatcatattcctctccttttagtcttcattagttttgccatcaaagcaaactcaaagtttaccctccatcatatgatttgaaattaga |
2095115 |
T |
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| Q |
300 |
aaaatac-gtttcatcaaaacaaactagaccacaatcactgtgtgtaagggacacttacttcaaattaccaattcattggttgagcttttttaaataaag |
398 |
Q |
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| T |
2095114 |
aaaataatgtttcatcaaaacaaactagaccacaatcactgtgtgtaagggacactt----caaattaccaattcattggttgagcttttttaaataaag |
2095019 |
T |
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| Q |
399 |
tgagagtaattttgaaaactgtatacataaacttatatttaaccataaatattacctttttgatgaaaaaagagagctataaacttaaaattgagcatgc |
498 |
Q |
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| T |
2095018 |
tgagagtaattttgaaaactgtttacataaacttatatttaaccataaatattacctttttgatgaaaaaagagagctataaacttaaaattgagcatgc |
2094919 |
T |
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| Q |
499 |
acgaactaaattcaggaatagtgcacattttttaagcttttgaagaagttgcacttgttgagtc-nnnnnnnttaattgctcttattttttctatggaca |
597 |
Q |
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| T |
2094918 |
actaactaaattcaggaatagtgcacattttttaagcttttgaagaagttgcacttgttgagtcaaaaaaaattaattgctcttgttttttttatggaca |
2094819 |
T |
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| Q |
598 |
gacataagtccctctctta |
616 |
Q |
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| T |
2094818 |
gacataagcccctttctta |
2094800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 2095413 - 2095311
Alignment:
| Q |
8 |
gatgtgacaatcacatttaaacagttttatcaagatcgaacagcgttataaaaattgtgcaacttaaaaatatgtataagcattttaggtaggacacata |
107 |
Q |
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| T |
2095413 |
gatgtgacaatcacatttgaacagtttcatcaagatcgaacaacgttatgaaaattgtgcaacttaaaaatatgtataaacattttaggtaggacacata |
2095314 |
T |
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| Q |
108 |
tca |
110 |
Q |
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||| |
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| T |
2095313 |
tca |
2095311 |
T |
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