View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4976-Insertion-8 (Length: 577)

Name: NF4976-Insertion-8
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4976-Insertion-8
NF4976-Insertion-8
[»] chr6 (12 HSPs)
chr6 (424-517)||(1831209-1831304)
chr6 (429-530)||(15603721-15603824)
chr6 (430-519)||(11680417-11680508)
chr6 (424-490)||(1131873-1131939)
chr6 (422-483)||(13758522-13758583)
chr6 (422-465)||(15060267-15060310)
chr6 (424-490)||(22012054-22012121)
chr6 (430-465)||(26817743-26817778)
chr6 (424-466)||(1423078-1423120)
chr6 (424-490)||(18675452-18675518)
chr6 (424-490)||(34043643-34043710)
chr6 (424-490)||(20990538-20990604)
[»] chr2 (10 HSPs)
chr2 (424-541)||(31548801-31548920)
chr2 (424-519)||(25621891-25621987)
chr2 (422-465)||(6883759-6883802)
chr2 (424-465)||(7444046-7444087)
chr2 (235-343)||(31548615-31548723)
chr2 (424-490)||(44322160-44322227)
chr2 (424-490)||(6221485-6221552)
chr2 (424-490)||(33015131-33015198)
chr2 (424-490)||(44313981-44314048)
chr2 (424-490)||(2554155-2554221)
[»] chr4 (9 HSPs)
chr4 (422-519)||(10142585-10142684)
chr4 (426-515)||(13957694-13957785)
chr4 (422-490)||(52460640-52460708)
chr4 (422-479)||(25201776-25201833)
chr4 (422-465)||(3665085-3665128)
chr4 (426-462)||(24611029-24611065)
chr4 (424-490)||(10094960-10095027)
chr4 (428-519)||(42511284-42511377)
chr4 (424-465)||(31915592-31915633)
[»] chr8 (9 HSPs)
chr8 (423-541)||(23231934-23232054)
chr8 (422-515)||(9381777-9381872)
chr8 (422-519)||(11648049-11648148)
chr8 (424-490)||(1981695-1981762)
chr8 (424-490)||(16729829-16729895)
chr8 (422-519)||(602067-602166)
chr8 (424-465)||(7263571-7263612)
chr8 (239-343)||(11647869-11647973)
chr8 (388-424)||(23231934-23231970)
[»] chr7 (10 HSPs)
chr7 (422-519)||(8113441-8113540)
chr7 (432-519)||(43178549-43178638)
chr7 (424-465)||(20394724-20394765)
chr7 (426-519)||(24441602-24441697)
chr7 (424-490)||(8389237-8389304)
chr7 (423-465)||(9420803-9420845)
chr7 (428-490)||(21863958-21864020)
chr7 (422-465)||(3123703-3123746)
chr7 (424-490)||(13754214-13754280)
chr7 (424-465)||(35477916-35477957)
[»] chr3 (7 HSPs)
chr3 (422-519)||(44879887-44879986)
chr3 (422-518)||(47185419-47185517)
chr3 (422-490)||(33100367-33100435)
chr3 (424-482)||(15760966-15761025)
chr3 (424-490)||(19157192-19157259)
chr3 (424-490)||(27941454-27941521)
chr3 (424-490)||(52448242-52448308)
[»] chr1 (12 HSPs)
chr1 (422-519)||(12028198-12028297)
chr1 (422-490)||(9023523-9023591)
chr1 (424-465)||(44310772-44310813)
chr1 (422-466)||(42055752-42055796)
chr1 (424-519)||(48646364-48646465)
chr1 (424-457)||(23664046-23664079)
chr1 (424-464)||(5208382-5208422)
chr1 (424-490)||(21906478-21906545)
chr1 (424-490)||(34307384-34307451)
chr1 (424-490)||(48596290-48596357)
chr1 (387-424)||(42055752-42055789)
chr1 (425-457)||(25095299-25095331)
[»] chr5 (17 HSPs)
chr5 (422-490)||(13820548-13820616)
chr5 (422-517)||(43170958-43171055)
chr5 (426-465)||(29789921-29789960)
chr5 (422-465)||(37135209-37135252)
chr5 (424-490)||(5578547-5578613)
chr5 (426-541)||(8805959-8806076)
chr5 (424-466)||(26402397-26402439)
chr5 (424-465)||(5120439-5120480)
chr5 (424-465)||(39537338-39537379)
chr5 (426-490)||(29150696-29150760)
chr5 (422-465)||(16686673-16686716)
chr5 (424-490)||(23962949-23963016)
chr5 (424-490)||(13490489-13490555)
chr5 (387-424)||(13820548-13820585)
chr5 (239-343)||(6769112-6769216)
chr5 (422-466)||(13825893-13825937)
chr5 (424-460)||(20891066-20891102)
[»] scaffold1266 (1 HSPs)
scaffold1266 (422-490)||(1672-1740)
[»] scaffold0385 (1 HSPs)
scaffold0385 (422-519)||(1036-1135)
[»] scaffold0263 (1 HSPs)
scaffold0263 (422-490)||(18278-18346)
[»] scaffold0116 (1 HSPs)
scaffold0116 (422-453)||(41108-41139)
[»] scaffold1364 (1 HSPs)
scaffold1364 (422-466)||(1230-1274)


Alignment Details
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 424 - 517
Target Start/End: Complemental strand, 1831304 - 1831209
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaa 517  Q
    ||||||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||| |||||   || |||||||||||||||||||||||    
T  1831304 acaccaaaacaaaataaaataccgcagaagtagagaacaataacatctgcgaagtagactgaaattttagcatctaagaataataacaccaaaaaa 1831209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 429 - 530
Target Start/End: Original strand, 15603721 - 15603824
Alignment:
Q  429 aaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattta--cacctaagaataataacaccaaaaaagtttacatt 526  Q
    |||||||||||||||||| ||||||||||||||||||  | |||  ||||| | || |||||   |||||||||||||||||||||||||| ||||||||    
T  15603721 aaaacaaaataaaatatcatagaagtagagaacaatagcacctgcaaagtaaattgaaattttagcacctaagaataataacaccaaaaaactttacatt 15603820  T
Q  527 acta 530  Q
    ||||    
T  15603821 acta 15603824  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 430 - 519
Target Start/End: Original strand, 11680417 - 11680508
Alignment:
Q  430 aaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgca--atttacacctaagaataataacaccaaaaaagt 519  Q
    |||||||||||||||||||||||||| |||||||||  |  || |||||| |||| |  ||| |||||||||||||||||||||||||||||    
T  11680417 aaacaaaataaaatatcgtagaagtatagaacaatagcacatgcgaagtatactgaaatattaacacctaagaataataacaccaaaaaagt 11680508  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 1131939 - 1131873
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||  ||||||||||| || |||||    
T  1131939 acaccaaaacaaaataaaatatcgtagaagtagagaaaaatagtacatgtgaagtagattgaaattt 1131873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 483
Target Start/End: Original strand, 13758522 - 13758583
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagact 483  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||  |  |||||||||||||    
T  13758522 agacaccaaaacagaataaaataccgtagaagtagagaacaatagcacatgtgaagtagact 13758583  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 465
Target Start/End: Complemental strand, 15060310 - 15060267
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 465  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  15060310 agacaccaaaacaaaataaaataccatagaagtagagaacaata 15060267  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 22012054 - 22012121
Alignment:
Q  424 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  || |||||||||||||| |||||    
T  22012054 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcatatgtgaagtagactgaaattt 22012121  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 430 - 465
Target Start/End: Complemental strand, 26817778 - 26817743
Alignment:
Q  430 aaacaaaataaaatatcgtagaagtagagaacaata 465  Q
    ||||||||||||||||||||||||||||||||||||    
T  26817778 aaacaaaataaaatatcgtagaagtagagaacaata 26817743  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 466
Target Start/End: Complemental strand, 1423120 - 1423078
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaataa 466  Q
    ||||||||||||||||||||||||||| ||||||||| |||||    
T  1423120 acaccaaaacaaaataaaatatcgtaggagtagagaaaaataa 1423078  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 18675518 - 18675452
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    |||||||||||||||||||||||| || ||||||||| ||||| |  || ||||||||||| |||||    
T  18675518 acaccaaaacaaaataaaatatcgcaggagtagagaaaaataacacatgcgaagtagactgaaattt 18675452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 34043710 - 34043643
Alignment:
Q  424 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  34043710 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 34043643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 20990604 - 20990538
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||| |||||||||| |||||||||| ||||  |  || ||||||||||| |||||    
T  20990604 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaattt 20990538  T

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Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 424 - 541
Target Start/End: Original strand, 31548801 - 31548920
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagttt 521  Q
    ||||||||||||||||||||||| ||||||||||||||||||  |  || ||||||||||| |||||   |||| |||||||||||||| |||||||||     
T  31548801 acaccaaaacaaaataaaatatcatagaagtagagaacaatagcacttgcgaagtagactgaaattttaccaccaaagaataataacacaaaaaaagttg 31548900  T
Q  522 acattactaaacgcgtctca 541  Q
    |||||||||||  |||||||    
T  31548901 acattactaaattcgtctca 31548920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 424 - 519
Target Start/End: Complemental strand, 25621987 - 25621891
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaatttac--acctaagaataataacaccaaaaaagt 519  Q
    |||||||||||||||||||||||||| ||||| |||||||||||   |||||||||||||| |||||    || |||||||||||||||||| |||||    
T  25621987 acaccaaaacaaaataaaatatcgtaaaagtatagaacaataatca-tgtgaagtagactgaaattttagaacttaagaataataacaccaacaaagt 25621891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 465
Target Start/End: Complemental strand, 6883802 - 6883759
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 465  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  6883802 agacaccaaaacaaaataagatatcgtagaagtagagaacaata 6883759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 465
Target Start/End: Complemental strand, 7444087 - 7444046
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 465  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  7444087 acaccaaaacaaaataaaatatcgtagaagtagagaaaaata 7444046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 343
Target Start/End: Original strand, 31548615 - 31548723
Alignment:
Q  235 gtttctagagttttacatgtcttaaacataatatgataaaagagtctcttgcataatacatcttaaatttcataagctcattgttttgattttgttaggt 334  Q
    ||||||||||||||||| |||||| || |||||||| ||||| ||| ||| ||||||||||   ||| ||  | || |||||||| | ||||| ||||||    
T  31548615 gtttctagagttttacaggtcttagacttaatatgagaaaagggtcccttacataatacataacaaacttttttagttcattgttgttattttattaggt 31548714  T
Q  335 cttcatttc 343  Q
    |||||||||    
T  31548715 cttcatttc 31548723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 44322160 - 44322227
Alignment:
Q  424 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  || |||||||||||||| |||||    
T  44322160 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcatatgtgaagtagactgaaattt 44322227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 6221552 - 6221485
Alignment:
Q  424 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  6221552 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 6221485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 33015131 - 33015198
Alignment:
Q  424 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  33015131 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 33015198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 44313981 - 44314048
Alignment:
Q  424 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  44313981 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcaaatgtgaagtagactgaaattt 44314048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 2554221 - 2554155
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||| ||||||| || |||||||||| ||||  |  |||||||||||||| |||||    
T  2554221 acaccaaaacaaaatgaaatatcctacaagtagagaaaaatagcacatgtgaagtagactgaaattt 2554155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 519
Target Start/End: Complemental strand, 10142684 - 10142585
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 519  Q
    |||||||||||||||||||||| ||||||||||| |||||||||  |  |||||||||||||| |||||   ||||| ||||||||||||||||||||||    
T  10142684 agacaccaaaacaaaataaaatgtcgtagaagtatagaacaatagcacatgtgaagtagactgaaattttagcacctgagaataataacaccaaaaaagt 10142585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 13957785 - 13957694
Alignment:
Q  426 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaa 515  Q
    |||||||||||||||||||||||||||||| |||||||||  |  ||  |||||||||| |||||   |||||||||||||||| |||||||    
T  13957785 accaaaacaaaataaaatatcgtagaagtatagaacaatagcacgtgcaaagtagactgaaatttgagcacctaagaataataataccaaaa 13957694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 422 - 490
Target Start/End: Complemental strand, 52460708 - 52460640
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||| |  || ||||||||||| |||||    
T  52460708 agacaccgaaacaaaataaaataccgtagaagtagagaacaataacacatgcgaagtagactgaaattt 52460640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 479
Target Start/End: Complemental strand, 25201833 - 25201776
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagta 479  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||| || |||||||    
T  25201833 agacaccaacacaagataaaataccgtagaagtagagaacaataatacctttgaagta 25201776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 465
Target Start/End: Original strand, 3665085 - 3665128
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 465  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  3665085 agacaccaaaacaaaataaaataccatagaagtagagaacaata 3665128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 462
Target Start/End: Original strand, 24611029 - 24611065
Alignment:
Q  426 accaaaacaaaataaaatatcgtagaagtagagaaca 462  Q
    ||||||||||||||||||| |||||||||||||||||    
T  24611029 accaaaacaaaataaaataccgtagaagtagagaaca 24611065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 10094960 - 10095027
Alignment:
Q  424 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  10094960 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 10095027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 519
Target Start/End: Original strand, 42511284 - 42511377
Alignment:
Q  428 caaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 519  Q
    ||||||| |||||||||||||||||||| |||||||||  |   |  |||||||||| |||||   ||||||| |||| |||||||||||||||    
T  42511284 caaaacataataaaatatcgtagaagtatagaacaatagcacacgcaaagtagactgaaattttagcacctaaaaatattaacaccaaaaaagt 42511377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 465
Target Start/End: Complemental strand, 31915633 - 31915592
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 465  Q
    ||||||||||||||||||||| | |||||||||| |||||||    
T  31915633 acaccaaaacaaaataaaataccatagaagtagacaacaata 31915592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 423 - 541
Target Start/End: Original strand, 23231934 - 23232054
Alignment:
Q  423 gacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagtt 520  Q
    |||||||||| ||||||||||| ||||||||||||||||||||| | ||  |||||| |||| |||||    |||||||||||||||||| ||||| |||    
T  23231934 gacaccaaaataaaataaaataccgtagaagtagagaacaataacacctacgaagtatactgaaattttagtacctaagaataataacacaaaaaaggtt 23232033  T
Q  521 tacattactaaacgcgtctca 541  Q
     ||||||||||| | ||||||    
T  23232034 gacattactaaatgtgtctca 23232054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 422 - 515
Target Start/End: Original strand, 9381777 - 9381872
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaa 515  Q
    |||||||||||||||||||| ||||||||||||| |||||||||  |  || ||||||||||| |||||   ||||||||||||||||||| ||||    
T  9381777 agacaccaaaacaaaataaagtatcgtagaagtatagaacaatagcacatgcgaagtagactgaaattttagcacctaagaataataacacaaaaa 9381872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 422 - 519
Target Start/End: Original strand, 11648049 - 11648148
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattta--cacctaagaataataacaccaaaaaagt 519  Q
    |||||| ||||||||||||||||   || |||||| ||||||||| |  || ||||||||||| |||||   ||||||||||||||||||||||||||||    
T  11648049 agacacaaaaacaaaataaaatactataaaagtagtgaacaataacacatgcgaagtagactgaaattttagcacctaagaataataacaccaaaaaagt 11648148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 1981762 - 1981695
Alignment:
Q  424 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||| |||||||||||||||||| ||||  || |||||||||||||| |||||    
T  1981762 acaccaaaacaaaataaaaatatcgtagaagtagagaaaaatagcatatgtgaagtagactgaaattt 1981695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 16729895 - 16729829
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |  || ||||||||||| |||||    
T  16729895 acaccaaaacaaaataaaatatcgtagaagtagagaaaaatagcacatgcgaagtagactgaaattt 16729829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 519
Target Start/End: Original strand, 602067 - 602166
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 519  Q
    ||||| |||||||||||||||||| || ||||||||||||||||  ||||   |||||  ||  |||||   || |||||||||||||||||||||||||    
T  602067 agacaacaaaacaaaataaaatattgttgaagtagagaacaatagcatctacaaagtaagcttaaattttagcaactaagaataataacaccaaaaaagt 602166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 465
Target Start/End: Original strand, 7263571 - 7263612
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 465  Q
    ||||||||||||||| |||||||||| |||||||||| ||||    
T  7263571 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaata 7263612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 11647869 - 11647973
Alignment:
Q  239 ctagagttttacatgtcttaaacataatatgataaaagagtctcttgcataatacatcttaaatttcataagctcattgttttgattttgttaggtcttc 338  Q
    |||||||||||||   |||| ||||||||||| ||||||| | ||  ||||||||||| ||||    || || ||| |||| ||||||| ||||||||||    
T  11647869 ctagagttttacagaccttagacataatatgagaaaagagcccctaacataatacatcataaaaaaaattagttcactgttatgattttattaggtcttc 11647968  T
Q  339 atttc 343  Q
    |||||    
T  11647969 atttc 11647973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 424
Target Start/End: Original strand, 23231934 - 23231970
Alignment:
Q  388 gacaccaaaagaaaataaaataccgtagaagttgaga 424  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  23231934 gacaccaaaataaaataaaataccgtagaagtagaga 23231970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 422 - 519
Target Start/End: Original strand, 8113441 - 8113540
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 519  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| |  || |||||| |||| |||||   ||||||||||||||||||| ||||||||    
T  8113441 agacaccaaaacaaaataaaatattgtagaagtatagaacaataacacatgcgaagtacactgaaattttagcacctaagaataataacacaaaaaaagt 8113540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 432 - 519
Target Start/End: Original strand, 43178549 - 43178638
Alignment:
Q  432 acaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 519  Q
    ||||||||||||||||||| |||| |||||||||  | || ||||||| ||| ||||||  ||||||||||| |||||||||||||||||    
T  43178549 acaaaataaaatatcgtaggagtaaagaacaatagcacctatgaagtaaactacaattttaacacctaagaacaataacaccaaaaaagt 43178638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 465
Target Start/End: Original strand, 20394724 - 20394765
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 465  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  20394724 acaccaaaacaaaataaaatatcgtagaagtagagaaaaata 20394765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 519
Target Start/End: Original strand, 24441602 - 24441697
Alignment:
Q  426 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 519  Q
    ||||||| | ||||||||||| |||||||| |||||||||  |  ||| |||||||||| ||| |  ||||||||||||||||||| |||||||||    
T  24441602 accaaaatagaataaaatatcatagaagtatagaacaatagcacatgtaaagtagactgaaatattaacacctaagaataataacagcaaaaaagt 24441697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 8389237 - 8389304
Alignment:
Q  424 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||| || ||||||||||||||| ||||| |  |||||||||||||| |||||    
T  8389237 acaccaaaacaaaataaaaataccgtagaagtagagaaaaataacacatgtgaagtagactgaaattt 8389304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 465
Target Start/End: Complemental strand, 9420845 - 9420803
Alignment:
Q  423 gacaccaaaacaaaataaaatatcgtagaagtagagaacaata 465  Q
    |||||||| ||| ||||||||||||||||||||||||||||||    
T  9420845 gacaccaacacataataaaatatcgtagaagtagagaacaata 9420803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 490
Target Start/End: Complemental strand, 21864020 - 21863958
Alignment:
Q  428 caaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||| ||||||||||||||||||||  | ||| |||||||| || |||||    
T  21864020 caaaacaaaataaaataccgtagaagtagagaacaatagcacctgcgaagtagagtgaaattt 21863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 465
Target Start/End: Original strand, 3123703 - 3123746
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 465  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||    
T  3123703 agacaccaaaacaaaataaaataccgtagaaatagataacaata 3123746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 13754280 - 13754214
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||| |||||||||| |||||||||| ||||  |  || ||||||||||| |||||    
T  13754280 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaattt 13754214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 465
Target Start/End: Original strand, 35477916 - 35477957
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 465  Q
    ||||||||||||||| |||||||||| |||||||||| ||||    
T  35477916 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaata 35477957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 422 - 519
Target Start/End: Complemental strand, 44879986 - 44879887
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 519  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| |  || ||||||||||  |||||   ||||||||||||||||||||||| ||||    
T  44879986 agacaccaaaacaaaataaaatattgtagaagtatagaacaataacacatgcgaagtagactaaaattttagcacctaagaataataacaccaaacaagt 44879887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 422 - 518
Target Start/End: Complemental strand, 47185517 - 47185419
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaag 518  Q
    ||||| |||||||| |||||||||||||||| || |||||||||  |  |||||||||||||| |||||  |||||||||||||||||||||| |||||    
T  47185517 agacatcaaaacaacataaaatatcgtagaaatatagaacaatagcaaatgtgaagtagactgaaattttgacacctaagaataataacaccagaaaag 47185419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 490
Target Start/End: Original strand, 33100367 - 33100435
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||||||  | ||||| ||||||||||||| |  || ||||||||||| |||||    
T  33100367 agacaccaaaacaaaataaaatgccttagaaatagagaacaataacacatgcgaagtagactgaaattt 33100435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 482
Target Start/End: Complemental strand, 15761025 - 15760966
Alignment:
Q  424 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagac 482  Q
    ||||||||||||||||||| || ||||||||||||||| ||||| |  ||||||||||||    
T  15761025 acaccaaaacaaaataaaaataccgtagaagtagagaaaaataacacatgtgaagtagac 15760966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 19157259 - 19157192
Alignment:
Q  424 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  19157259 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 19157192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 27941454 - 27941521
Alignment:
Q  424 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  27941454 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 27941521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 52448308 - 52448242
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||| |||||||||| |||||||||| ||||  |  || ||||||||||| |||||    
T  52448308 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaattt 52448242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 422 - 519
Target Start/End: Complemental strand, 12028297 - 12028198
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 519  Q
    |||||| |||||||||||||||||| |||||||| ||||||| || |  |||||||||||||| |||||   ||||||| ||||||||||||||||||||    
T  12028297 agacacaaaaacaaaataaaatatcctagaagtatagaacaacaacacatgtgaagtagactgaaattttagcacctaaaaataataacaccaaaaaagt 12028198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 422 - 490
Target Start/End: Complemental strand, 9023591 - 9023523
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  || |||||| |||| |||||    
T  9023591 agacaccaaaacaaaataaaatatcgtaaaagtagagaacaataatacatgcgaagtatactgaaattt 9023523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 465
Target Start/End: Complemental strand, 44310813 - 44310772
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 465  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44310813 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 44310772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 422 - 466
Target Start/End: Original strand, 42055752 - 42055796
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataa 466  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  42055752 agacaccaaaacaaaataaaataccgtagaagtagagaacaataa 42055796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 519
Target Start/End: Complemental strand, 48646465 - 48646364
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaaca--ataata---tctgtgaagtagactgcaattta-cacctaagaataataacaccaaaaaa 517  Q
    ||||||| |||||||||||||||||||||||| ||||||  ||||||   | || ||| ||||||  | |||| ||||||||||||||||||||||||||    
T  48646465 acaccaacacaaaataaaatatcgtagaagtatagaacaatataatagattatgcgaaatagactaaattttagcacctaagaataataacaccaaaaaa 48646366  T
Q  518 gt 519  Q
    ||    
T  48646365 gt 48646364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 457
Target Start/End: Original strand, 23664046 - 23664079
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtaga 457  Q
    ||||||||||||||||||||||||||||||||||    
T  23664046 acaccaaaacaaaataaaatatcgtagaagtaga 23664079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 464
Target Start/End: Original strand, 5208382 - 5208422
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaat 464  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  5208382 acaccaaaataaaataaaatatcgtagaagtatagaacaat 5208422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 21906545 - 21906478
Alignment:
Q  424 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  21906545 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 21906478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 34307384 - 34307451
Alignment:
Q  424 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||| |||||||||||||||||| ||||  |  ||||||||||| || |||||    
T  34307384 acaccaaaacaaaataaaaatatcgtagaagtagagaaaaatagcacatgtgaagtagaatgaaattt 34307451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 48596290 - 48596357
Alignment:
Q  424 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  48596290 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 48596357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 424
Target Start/End: Original strand, 42055752 - 42055789
Alignment:
Q  387 agacaccaaaagaaaataaaataccgtagaagttgaga 424  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  42055752 agacaccaaaacaaaataaaataccgtagaagtagaga 42055789  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 457
Target Start/End: Complemental strand, 25095331 - 25095299
Alignment:
Q  425 caccaaaacaaaataaaatatcgtagaagtaga 457  Q
    ||||||||||||||||||||||||| |||||||    
T  25095331 caccaaaacaaaataaaatatcgtaaaagtaga 25095299  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 422 - 490
Target Start/End: Original strand, 13820548 - 13820616
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||||||| |||||||||||||||||| || |  |||||||||||||| |||||    
T  13820548 agacaccaaaacaaaataaaataccgtagaagtagagaacaacaacacatgtgaagtagactgaaattt 13820616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 422 - 517
Target Start/End: Original strand, 43170958 - 43171055
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaa 517  Q
    |||||||||||||||||||||||||||||||| |  ||||||||  |  || ||||||||||| |||||   ||||||||||||||||||| ||||||    
T  43170958 agacaccaaaacaaaataaaatatcgtagaagcatggaacaatagcacatgcgaagtagactgtaattttagcacctaagaataataacacgaaaaaa 43171055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 465
Target Start/End: Complemental strand, 29789960 - 29789921
Alignment:
Q  426 accaaaacaaaataaaatatcgtagaagtagagaacaata 465  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  29789960 accaaaacaaaataaaatatcgtagaagtatagaacaata 29789921  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 465
Target Start/End: Complemental strand, 37135252 - 37135209
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 465  Q
    |||||||||||||| |||||||||| ||||||||||||||||||    
T  37135252 agacaccaaaacaacataaaatatcttagaagtagagaacaata 37135209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 5578547 - 5578613
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    |||||||||||||||||||||||||| |||||||||| ||||  || ||  |||||||||| |||||    
T  5578547 acaccaaaacaaaataaaatatcgtaaaagtagagaaaaatagcatatgcaaagtagactgaaattt 5578613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 541
Target Start/End: Original strand, 8805959 - 8806076
Alignment:
Q  426 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattta--cacctaagaataataacaccaaaaaagtttac 523  Q
    ||||||||||||||||||| |||||||||||| |||||||  | ||   |  || |||| | |||   ||||||||| ||||||||| ||||||||| ||    
T  8805959 accaaaacaaaataaaataccgtagaagtagataacaatagcaccttcaacatatactgaagttttagcacctaagagtaataacacaaaaaaagttgac 8806058  T
Q  524 attactaaacgcgtctca 541  Q
    ||||||||| ||||||||    
T  8806059 attactaaatgcgtctca 8806076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 466
Target Start/End: Complemental strand, 26402439 - 26402397
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaataa 466  Q
    ||||||||||||||||||||| ||||||||||| |||||||||    
T  26402439 acaccaaaacaaaataaaataccgtagaagtagcgaacaataa 26402397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 465
Target Start/End: Original strand, 5120439 - 5120480
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 465  Q
    ||||||||||||||||||||| |||||||||| |||||||||    
T  5120439 acaccaaaacaaaataaaataccgtagaagtatagaacaata 5120480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 465
Target Start/End: Original strand, 39537338 - 39537379
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 465  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  39537338 acaccaaaacaaaataaaatatcttagaagtagagaaaaata 39537379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 490
Target Start/End: Complemental strand, 29150760 - 29150696
Alignment:
Q  426 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||| |||| ||||||||| |||||| |  || ||||||||||| |||||    
T  29150760 accaaaacaaaataaaataccgtaaaagtagagagcaataacacttgcgaagtagactgaaattt 29150696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 465
Target Start/End: Original strand, 16686673 - 16686716
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 465  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||    
T  16686673 agacaccaaaacaaaataaaataccgtataagtatagaacaata 16686716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 23963016 - 23962949
Alignment:
Q  424 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  23963016 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 23962949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 13490555 - 13490489
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    |||||||||||||||||||| ||||||||||| |||| ||||  |  || ||||||||||| |||||    
T  13490555 acaccaaaacaaaataaaatgtcgtagaagtatagaaaaatagcacatgcgaagtagactgaaattt 13490489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 424
Target Start/End: Original strand, 13820548 - 13820585
Alignment:
Q  387 agacaccaaaagaaaataaaataccgtagaagttgaga 424  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  13820548 agacaccaaaacaaaataaaataccgtagaagtagaga 13820585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 6769112 - 6769216
Alignment:
Q  239 ctagagttttacatgtcttaaacataatatgataaaagagtctcttgcataatacatcttaaatttcataagctcattgttttgattttgttaggtcttc 338  Q
    ||||||||||||| | ||||| |||||||||| |||||   | |||  |||||||||| ||| |||  | ||||||||||| ||||||| | ||||||||    
T  6769112 ctagagttttacaggccttaagcataatatgagaaaaggtccccttagataatacatcataattttttttagctcattgttgtgattttatcaggtcttc 6769211  T
Q  339 atttc 343  Q
     ||||    
T  6769212 ttttc 6769216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 466
Target Start/End: Original strand, 13825893 - 13825937
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataa 466  Q
    |||||| ||||||||| |||||| |||| ||||||||||||||||    
T  13825893 agacacaaaaacaaaacaaaataccgtaaaagtagagaacaataa 13825937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 460
Target Start/End: Original strand, 20891066 - 20891102
Alignment:
Q  424 acaccaaaacaaaataaaatatcgtagaagtagagaa 460  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  20891066 acaccaaaacaaaataaaatattgtagaagtaaagaa 20891102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 490
Target Start/End: Complemental strand, 1740 - 1672
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||| |  | |||||||||||| |||||    
T  1740 agacagcaaaccaaaataaaataccgtagaagtagagaacaataacacttatgaagtagactgaaattt 1672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 519
Target Start/End: Complemental strand, 1135 - 1036
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 519  Q
    ||||||||||||||||||||||||| ||||| || |||||||||  |  ||  |||||||||  |||||  | ||||||||||||||||||| |||||||    
T  1135 agacaccaaaacaaaataaaatatcatagaaatatagaacaatagcacatgcaaagtagactaaaattttaaaacctaagaataataacacccaaaaagt 1036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 490
Target Start/End: Original strand, 18278 - 18346
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 490  Q
    ||||| |||| |||||||||||| | ||||||||||||||||||| |  | |||||||||||| |||||    
T  18278 agacagcaaaccaaaataaaataccatagaagtagagaacaataacacttatgaagtagactgaaattt 18346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 453
Target Start/End: Complemental strand, 41139 - 41108
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaag 453  Q
    ||||||||||||||||||||||||||||||||    
T  41139 agacaccaaaacaaaataaaatatcgtagaag 41108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1364 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1364
Description:

Target: scaffold1364; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 466
Target Start/End: Complemental strand, 1274 - 1230
Alignment:
Q  422 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataa 466  Q
    ||||| |||| |||||||||||| |||||||||||| ||||||||    
T  1274 agacatcaaaccaaaataaaataccgtagaagtagaaaacaataa 1230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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