View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4976-Insertion-9 (Length: 510)
Name: NF4976-Insertion-9
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4976-Insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 7 - 494
Target Start/End: Complemental strand, 44730099 - 44729612
Alignment:
| Q |
7 |
agaaatgaacaaaaaatatgtcatggttccaatgaaaccagggaagcctgtcggattaagcgccgaagattgtcgtcgaattctttcgatcgctaactca |
106 |
Q |
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| T |
44730099 |
agaaatgaacaaaaaatatgtcatggttccaatgaaaccagggaagcctgtcggattaagcgccgaagattgtagtcgaattctttcgatcgctaactca |
44730000 |
T |
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| Q |
107 |
gctcttaataccaataattatctcatgagctctcaaggctttgttccttggcttgtaaggtttttgaagaaaaagaaagttgaaattggagaatatgaaa |
206 |
Q |
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| T |
44729999 |
gctcttaataccaataattatctcatgagctctcaaggctttgttccttggcttgtaaggtttttgaagaaaaagaaagttgaaattggagaagttgaaa |
44729900 |
T |
|
| Q |
207 |
ctagtttgcagataaatgaagaagagaggtttaatttttgtgagtttttgccagaaatgatggaggaaagagcagagtatttgaatttgagtaggcaatt |
306 |
Q |
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| T |
44729899 |
ctagtttgcagataaatgaagaagagaggtttaatttttgtgagtttttgccagaaatgatggaggaaagagcagagtatttgaatttgagtaggcaatt |
44729800 |
T |
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| Q |
307 |
atcagggaaagggtggaagcctagcttggataccattaaggaaaagaaggttaagagaaagatatctggttggttattccttacaagttttattggtgca |
406 |
Q |
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| T |
44729799 |
atcagggaaagggtggaagcctagcttggatacaattaaggaaaagaaggttaagagaaagatatctggttggttattccttacaagttttattggtgca |
44729700 |
T |
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| Q |
407 |
aagatttgatcaataatatggtcaaattagtgaaagttgttggtttaagttggttttaattgttagttatgttatattggcacttctg |
494 |
Q |
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| T |
44729699 |
aagatttgatcaataatatggtcaaattagtgaaagttgttggtttaagttggttttaattgttagttatgttatattggcacttctg |
44729612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 39084251 - 39084314
Alignment:
| Q |
291 |
atttgagtaggcaattatcagggaaagggtggaagcctagcttggataccattaaggaaaagaa |
354 |
Q |
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|||||| |||||| | |||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
39084251 |
atttgaataggcagatttcagggaaagggtggaagcctagcttggatactattaaggagaagaa |
39084314 |
T |
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