View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4976_high_10 (Length: 363)

Name: NF4976_high_10
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4976_high_10
NF4976_high_10
[»] chr1 (1 HSPs)
chr1 (16-363)||(52423365-52423712)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 52423712 - 52423365
Alignment:
Q  16 attcaaagactctaaaacacaaatagtcagagaaaccgcatccaccttaagacaaagctactgacaacagaagaggaagaataccattcatcaactgcct 115  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52423712 attcaaagactctaaaacacaaatagtcaaagaaaccgcatccaccttaagacaaagctactgacaacagaagaggaagaataccattcaccaactgcct 52423613  T
Q  116 ctccttcacaatacgccacataattagcaaaaacacaccacacagagtcctaagactaaaactaacagtacaaggtccaggaaatgaggcatcaacagag 215  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  52423612 ctccttcacaatacgccacataattagcaaagacacaccacacagagtcctaagactaaaactaacagtacaaggtccacgaaatgaggcatcaacagag 52423513  T
Q  216 caaaaagccactgacctgaaaattaaactccataacgatgactgcaacgcagaaactgcgtgactcccagaaatgcaaactatagccaccaccatgcagt 315  Q
    |||||||||||| ||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52423512 caaaaagccactcacctgaaaaataaactccacaacgatgactgcaacgcacaaactgcgtgactcccagaaatgcaaactatagccaccaccatgcagt 52423413  T
Q  316 ccagatacccaaaaggctgtgcaacaccagagacgaatccccttcgaa 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52423412 ccagatacccaaaaggctgtgcaacaccagagacgaatccccttcgaa 52423365  T

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