View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4976_high_11 (Length: 362)
Name: NF4976_high_11
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4976_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 3 - 344
Target Start/End: Complemental strand, 11025304 - 11024961
Alignment:
| Q |
3 |
gatgtcgaagaaaataatattttggactattcttaaaattattccaaatcctttgcattactcaactaaacttcgtcataggattaatctttcgacctaa |
102 |
Q |
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| T |
11025304 |
gatgtagaagaaaataatattttggactattcttaaaattattccaaatcctttgcattactcaactaaacttcgtcataggattaatctttcgacctaa |
11025205 |
T |
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| Q |
103 |
atatcatttatcgaaaaaagatataatactattgatcattagattaatctatcgaaaaaagatataatcctttgc--atattattgaattgaacgaagaa |
200 |
Q |
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| T |
11025204 |
atatcatttatcgaaaaaagatataatactattgatcattagattaatctatcgaaaaaagatataatcctttgcatatattattgaattgaacgaagaa |
11025105 |
T |
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| Q |
201 |
tagagttacctttcttctttttggggaaacaatctacttccttgttggtactattaccaacagtattcttccaaccacatatttttccttttgattcaca |
300 |
Q |
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| T |
11025104 |
tagagttacctttcttctttttggggaaacaatctacttccttgttggtactattaccaacagtattcttccaaccacatatttttccttttgattcaca |
11025005 |
T |
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| Q |
301 |
atgtttacaactaggctcagaccacatcaaacgaagagagtttt |
344 |
Q |
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| T |
11025004 |
atgtttacaactaggctcagaccacatcaaacgaagagagtttt |
11024961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 179 - 339
Target Start/End: Complemental strand, 11040176 - 11040016
Alignment:
| Q |
179 |
tattattgaattgaacgaagaatagagttacctttcttctttttggggaaacaatctacttccttgttggtactattaccaacagtattcttccaaccac |
278 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||| |||| ||||||||||||||||||| ||| |||| | |||||| |||||||||| |
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| T |
11040176 |
tattattgaattgaacaaagaatagagttacctttcttgttttttgggacacaatctacttccttgttgtcactgttactagtagtatttttccaaccac |
11040077 |
T |
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| Q |
279 |
atatttttccttttgattcacaatgtttacaactaggctcagaccacatcaaacgaagaga |
339 |
Q |
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| T |
11040076 |
atatttttccttttgattcacagtgtttacaattaggctcagaccacgtcaaacgaagaga |
11040016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 218 - 337
Target Start/End: Complemental strand, 10929552 - 10929433
Alignment:
| Q |
218 |
tttttggggaaacaatctacttccttgttggtactattaccaacagtattcttccaaccacatatttttccttttgattcacaatgtttacaactaggct |
317 |
Q |
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||||||| ||||||| ||||||||||||||||||||||| | |||||||||||| ||||| ||||||||| ||||||||| ||||||||| |||||| |
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| T |
10929552 |
tttttggcaaaacaatatacttccttgttggtactattactagtagtattcttccagtcacatctttttccttctgattcacagtgtttacaattaggct |
10929453 |
T |
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| Q |
318 |
cagaccacatcaaacgaaga |
337 |
Q |
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| T |
10929452 |
cagaccacttcaaacgaaga |
10929433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 218 - 337
Target Start/End: Complemental strand, 10990640 - 10990524
Alignment:
| Q |
218 |
tttttggggaaacaatctacttccttgttggtactattaccaacagtattcttccaaccacatatttttccttttgattcacaatgtttacaactaggct |
317 |
Q |
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| T |
10990640 |
tttttggcgaagcaatctacttccttgttggtagtactagta---gtattcttccagccacatctgtttccttttgattcacaatgtttgcaattaggct |
10990544 |
T |
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| Q |
318 |
cagaccacatcaaacgaaga |
337 |
Q |
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| T |
10990543 |
cagaccacatcaaacgaaga |
10990524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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