View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4976_high_19 (Length: 236)
Name: NF4976_high_19
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4976_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 7894733 - 7894527
Alignment:
| Q |
14 |
aatataagattggttgttatcaatatatgagtataatttcactcataaaaatctgtaatgaaaggttgttgataaaaatgaactctaattacaagaaaaa |
113 |
Q |
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| T |
7894733 |
aatataagattggttgttatcaatatatgagtataatttcactcataaaaatatataatgaaaggttcttgataaaaatgaactctaattacaagaaaag |
7894634 |
T |
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| Q |
114 |
tagnnnnnnnnnaatatgttctatgagctaaa-ggtacaaatatgattcgtctctatactttaaatacatgagtgaaaggatatttgcaacggttgctga |
212 |
Q |
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| T |
7894633 |
tagtttttttttaatatgttctatgagctaaaaggtacaaatatgattcgtctctatactttaaatacatgagtgaaaggatatttgcaacggttgctga |
7894534 |
T |
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| Q |
213 |
cttttgt |
219 |
Q |
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||||||| |
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| T |
7894533 |
cttttgt |
7894527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 7905415 - 7905363
Alignment:
| Q |
58 |
ataaaaatctgtaatgaaaggttgttgataaaaatgaactctaattacaagaa |
110 |
Q |
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|||||||| | || ||||||||||| ||||||||| ||||||||||||||||| |
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| T |
7905415 |
ataaaaatatatattgaaaggttgtcgataaaaataaactctaattacaagaa |
7905363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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