View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4976_high_4 (Length: 518)
Name: NF4976_high_4
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4976_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 10 - 503
Target Start/End: Complemental strand, 7539612 - 7539119
Alignment:
| Q |
10 |
attattctccatccaagtcttaaagataattttccaaggaaataatttgatagataaccaagtaagaaacctatgttaatggaaagatctggtagagaag |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7539612 |
attattctccatccaagtcttaaagataattttccaaggaaataatttgagagataaccaagtaagaaacctatgttaatggaaagatctggtagagaag |
7539513 |
T |
|
| Q |
110 |
ttagaaaacctctataagaaggagatgaaatttctgcactgtaaacagatactatgataagtgcaaaaccaacaccaaatcctgcaatgcatcttccaat |
209 |
Q |
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| T |
7539512 |
ttagaaaacctctataagaaggagatgaaatttctgcactgtaaacagatactatgataagtgcaaaaccaacaccaaatcctgcaatgcatcttccaat |
7539413 |
T |
|
| Q |
210 |
cattaagattggaaaagatgaaccataccccattaaaattgagcctaagaagaagaatatcgacgatagcatgattgtgtagcgtcgacctatgtaatcg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7539412 |
cattaagattggaaaagatgaaccataccccattaaaattgagcctaagaagaagaatatcgacgatagcatgattgtgtagcgtcgacctatgtaatcg |
7539313 |
T |
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| Q |
310 |
gataatcttcctgcaatcatgcatgctggtaatgcacatgcatttaagattcctgctagaagctgcacttgcatgtcactgatttcaagttcttccttta |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7539312 |
gataatcttcctgcaatcatgcatgctggtaatgcacatgcatttaagattcctgctagaagctgcacttgcatgtcactgatttcaagttcttccttta |
7539213 |
T |
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| Q |
410 |
tgaataagagtgctccagccatcactgttgtaactaaaataaaaaatatttacctattagttgattttgcatagctattttatgccaaaaaatg |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7539212 |
tgaataagagtgctccagccatcactgttgtaactaaaataaaaaatatttacctattagttgattttgcatagctattttatgccaaaaaatg |
7539119 |
T |
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