View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4976_high_6 (Length: 393)
Name: NF4976_high_6
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4976_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 51510650 - 51511025
Alignment:
| Q |
1 |
catgtatgatgatcccagtgacaaaaagggtgttgaatatccaagacttaaataccctgttacatgcatacacagataataaaacctcaagcttgaacat |
100 |
Q |
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| T |
51510650 |
catgtatgatgatcccagtgacaaaaagggtgttgaatatccaagacttaaataccctgttacatgcatacacagataataaaacctcaagcttgaacat |
51510749 |
T |
|
| Q |
101 |
tacaagtcatcactaactaattaaagtcacacaatttgaaaataaaattggattaggaattttcatacgctgtcctagtccacgtaagaagtcaatcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51510750 |
tacaagtcatcactaactaattaaagtcacacaatttgaaaataaaattggattaggaattttcatacgctgtcctagtccacgtaagaagtcaatcatt |
51510849 |
T |
|
| Q |
201 |
ccagctctaccagcaaaatttccaaatgcaagtaatcttttcccattttctccaacaatcaattcatagtcatataatgatgctctctcagctaaaatct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51510850 |
ccagctctaccagcaaaatttccaaatgcaagtaatcttttcccattttctccaacaatcaattcatagtcatataatgatgctctctcagctaaaatct |
51510949 |
T |
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| Q |
301 |
acaacaaggttagaaaaatgaagtgaaaagttagaaatggcaacgagaagctacaacaagtaaacatgtttgaaac |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51510950 |
acaacaaggttagaaaaatgaagtgaaaagttagaaatggcaacgagaagctacaacaagtaaacatgtttgaaac |
51511025 |
T |
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