View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4976_high_8 (Length: 380)
Name: NF4976_high_8
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4976_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 190525 - 190168
Alignment:
| Q |
1 |
aattatttgtcactttttagaaacaatacagggaaatccagtcaacataggttgcttctatgatcaatcttctactttaatttgcaggaactagcagcta |
100 |
Q |
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| T |
190525 |
aattatttgtcactttttagaaacaatacagggaaatctagtcaacataggttgcttctatgatcaatcttctactttaatttgcaggaactagc---ta |
190429 |
T |
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| Q |
101 |
atccatgatatattggtatatataatgtgtgcatgtagctagaatattagatcaacgtgtcatgagattgcataacaaggttagttaaatttatcatcat |
200 |
Q |
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| T |
190428 |
atccatgatatattggtatatataatgtgtgcatgtagctaga---ttagatcaacgtgtcatgagattgcataacaaggttagttaaatttaccatcat |
190332 |
T |
|
| Q |
201 |
acttgacttaattacctaagaccacaaaaagttgatctgatgttaaatatctaattatggtaatgtttatcaaaataacaaaaatgttgtttcctatatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
190331 |
acttgacttaattacctaagaccacaaaaagttgatctgatgttaaatatctaattatggtaatgtttatcaaaataacaaaaatgttatttcctatatg |
190232 |
T |
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| Q |
301 |
tctctattttgccaagtggctctgaacctggacacaatcaacttaactcatgtggtagctagct |
364 |
Q |
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| T |
190231 |
tctctattttgccaagtggctctgaacctggacacaatcaacttaactcatgtggtagctagct |
190168 |
T |
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