View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4976_low_1 (Length: 941)
Name: NF4976_low_1
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4976_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 789; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 26 - 927
Target Start/End: Complemental strand, 38174059 - 38173159
Alignment:
| Q |
26 |
taagcatttccaaaaagaaaccaaaaccgaaaccctcattggttgccgatatggaaaccaagtacatattttcgctattaattccatcaaatctttctgt |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
38174059 |
taagcatttccaaaaagaaaccaaaaccgaaaccctcattggttgccgatatggaaaccaagtacaaattttcgctattaattccatcaaatctttttgt |
38173960 |
T |
|
| Q |
126 |
taaccctaaacctaatccctcttccgccgcgcctccacaaaaaatatggacaacaacgaccacgatttcgccctcgccgattccttcattaattttgatt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
38173959 |
taaccctaaacctaatccctcttccgccgcgcctccacaaaaaacatggacaacgacgacgacgttttcgccctcgccgattccttcattaattttgatt |
38173860 |
T |
|
| Q |
226 |
atgcccctgattctcctcctcctctttcggatcctcctgttgcgtgttccggtgttgaaaatgaagttaatgaaaatgtcgagattattgatgctgttgt |
325 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38173859 |
atgcccctgattcccctcctcctctttcggatcctcccgttgcgtgttccggtgttgaaaatgaagttaatgaaaatgtcgagattattgatgctgttgt |
38173760 |
T |
|
| Q |
326 |
tagaagcgagattatcgctaatgatgatgaaattagaggcgacattattgctaataactatgatggtactcaaatgattgatattagagatgagattatt |
425 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38173759 |
tagaagcgagattatctctaatgatgatgaaattagaggcgacattattactaataactatgatggtactcaaatgattgatattagagatgagattatt |
38173660 |
T |
|
| Q |
426 |
gccaatgatgatgataatgaaatggatagtgatagtagttggattgaaagaaccgagagtgaggagtatgagtatgaagaaggcgagatcgttgattcta |
525 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38173659 |
gccaatgatgatggtaatgaaatggatagtgatagtagttggattgaaagaaccgagagtgaggagtatgagtatgaagaaggcgagatcgttgattcta |
38173560 |
T |
|
| Q |
526 |
attctgaagataaagaagttgattccgaggaaacgactagctggtgctttgatgttggcggcggcggcgatgatgatgatcagtctcagtctcaagaaag |
625 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |
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| T |
38173559 |
attctgaagataaagaagatgattccgaggaaacgactagctggtgctttgatgttggc---ggcgacaatgatgatgatcagtctcagtctcaagaaag |
38173463 |
T |
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| Q |
626 |
tagaacgaacgagcttgaggtattg-nnnnnnnattttatttacgtcttgcagattaaatgtttgttcatttgac-aatatgatttattctgaatggtaa |
723 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
38173462 |
tagaacgaacgagcttgaggtattgtttattttattttatttacgtcttgcagattaaatgtttgttcatttgtcaaatatgatttattctgaatggtaa |
38173363 |
T |
|
| Q |
724 |
tgcaggtcattcgtactgattagtttgaaatattaactggttgatttagatgctaatgatattttacttatattcagtttaaagacatgtgcttggtggg |
823 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38173362 |
tgcaggtcattcgtactgattagtttgaaatattaactggttgatttagatgctaatgatattttacttatattcagtttaaagacatgtgcttggtggg |
38173263 |
T |
|
| Q |
824 |
tttgaactttgaatcctgtggttctgatcccactatgcttctgtgccaacagatgaatctgaattgatagattatatactttgactggttgaaatgttga |
923 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38173262 |
tttgaactttgaatcctgtggttctgatcccactatgcttctgtgccaacagatgaatctgaattgatagattatatactttgactggttgaactgttga |
38173163 |
T |
|
| Q |
924 |
aggt |
927 |
Q |
| |
|
|||| |
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|
| T |
38173162 |
aggt |
38173159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 26415287 - 26415363
Alignment:
| Q |
49 |
aaaccgaaaccctcattggttgccgatatggaaaccaagtacatattttcgctattaattccatcaaatctttctgtt |
126 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| |||| |
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| T |
26415287 |
aaacctaaatcctcattggttgccgatatggaaaccaagtaca-attttttctattaattccacgaaatctttgtgtt |
26415363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 26416898 - 26416826
Alignment:
| Q |
54 |
gaaaccctcattggttgccgatatggaaaccaagt-acatattttcgctattaattccatcaaatctttctgtt |
126 |
Q |
| |
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|||||||||||||||| |||||||||||| || || |||| ||||| |||||||||||| ||||||||| |||| |
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| T |
26416898 |
gaaaccctcattggttcccgatatggaaagcatgtcacattttttc-ctattaattccaccaaatctttatgtt |
26416826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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