View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4976_low_10 (Length: 363)

Name: NF4976_low_10
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4976_low_10
NF4976_low_10
[»] chr1 (1 HSPs)
chr1 (16-363)||(52423365-52423712)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 52423712 - 52423365
Alignment:
Q  16 attcaaagactctaaaacacaaatagtcagagaaaccgcatccaccttaagacaaagctactgacaacagaagaggaagaataccattcatcaactgcct 115  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52423712 attcaaagactctaaaacacaaatagtcaaagaaaccgcatccaccttaagacaaagctactgacaacagaagaggaagaataccattcaccaactgcct 52423613  T
Q  116 ctccttcacaatacgccacataattagcaaaaacacaccacacagagtcctaagactaaaactaacagtacaaggtccaggaaatgaggcatcaacagag 215  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  52423612 ctccttcacaatacgccacataattagcaaagacacaccacacagagtcctaagactaaaactaacagtacaaggtccacgaaatgaggcatcaacagag 52423513  T
Q  216 caaaaagccactgacctgaaaattaaactccataacgatgactgcaacgcagaaactgcgtgactcccagaaatgcaaactatagccaccaccatgcagt 315  Q
    |||||||||||| ||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52423512 caaaaagccactcacctgaaaaataaactccacaacgatgactgcaacgcacaaactgcgtgactcccagaaatgcaaactatagccaccaccatgcagt 52423413  T
Q  316 ccagatacccaaaaggctgtgcaacaccagagacgaatccccttcgaa 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52423412 ccagatacccaaaaggctgtgcaacaccagagacgaatccccttcgaa 52423365  T

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