View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4976_low_12 (Length: 338)
Name: NF4976_low_12
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4976_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 35622224 - 35621905
Alignment:
| Q |
1 |
ttgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaaattctgaaaatgctcaataaagtttcatcagaagaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35622224 |
ttgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtcgagagaaagaaattctgaaaatgctcaataaagtttcatcagaagaaag |
35622125 |
T |
|
| Q |
101 |
tgttgatgatgataacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35622124 |
tgttgatgatgataacattaacctagcttcaagtttaccaaaaccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaattg |
35622025 |
T |
|
| Q |
201 |
tttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35622024 |
tttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatt |
35621925 |
T |
|
| Q |
301 |
tagggttcaacatttatttg |
320 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
35621924 |
tagggttcaacatttatttg |
35621905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 34263306 - 34262984
Alignment:
| Q |
1 |
ttgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaaattctgaaaatgctcaataaagtttcatcagaagaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| | |||| |||||| | ||||| |||| ||||||| |
|
|
| T |
34263306 |
ttgcttatttcttcgttactgagtcgccaaggtggcttattatgcaaggtcgagagaaagaaattataaaaaggctcaaaagagttttatcaaaagaaag |
34263207 |
T |
|
| Q |
101 |
tgttgatgatgat---aacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaa |
197 |
Q |
| |
|
||||||||||||| |||| ||| |||| ||| ||||||||||| || ||| |||||||||| || |||||||| ||||||||||||||||||| || |
|
|
| T |
34263206 |
tgttgatgatgatgataacactaatctaggttcgagtttaccaaaaccacccacaaaagaaaaggttacaatttttcaacattactcttcaataggtgaa |
34263107 |
T |
|
| Q |
198 |
ttgtttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaa |
297 |
Q |
| |
|
||| ||||||||| |||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
34263106 |
ttgattcataaaagatgggctcttataagaataatagctgttatgattcttggaattggaattggaatggtttatcttggtatgccactagcagttggaa |
34263007 |
T |
|
| Q |
298 |
atttagggttcaacatttatttg |
320 |
Q |
| |
|
|||| || ||||| ||||||||| |
|
|
| T |
34263006 |
atttgggattcaatatttatttg |
34262984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 14580095 - 14579780
Alignment:
| Q |
1 |
ttgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaaattctgaaaatgctcaataaagtttcatcagaagaaag |
100 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||| || |||||||| |
|
|
| T |
14580095 |
ttgcttatctctttgttaccgagtcgcctaggtggcttgttatgcaaggtcgagagaaagaaattttgaaaatgctcaaaagggtttcttctgaagaaag |
14579996 |
T |
|
| Q |
101 |
tgttgatgatgataacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaattg |
200 |
Q |
| |
|
|| |||||||||| | ||||| ||||||| | ||||||||| | ||| ||||||||||| ||||| ||||| ||| |||||| ||||||||| |||| |
|
|
| T |
14579995 |
tgccgatgatgatagcgttaacttagcttcgaatttaccaaaacttcccccaaaagaaaaagtttcattttttcaactttactcatcaataggagaatta |
14579896 |
T |
|
| Q |
201 |
tttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatt |
300 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14579895 |
tttcataaaagatgggctgttataagaatgatagctgttatgattcttggaattggacttggaatggtttattttggtatgccactagctgttggaaatt |
14579796 |
T |
|
| Q |
301 |
tagggttcaacattta |
316 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
14579795 |
taggattcaacattta |
14579780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 14543492 - 14543807
Alignment:
| Q |
1 |
ttgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaaattctgaaaatgctcaataaagtttcatcagaagaaag |
100 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||| || |||||||| |
|
|
| T |
14543492 |
ttgcttatctctttgttaccgagtcgcctaggtggcttgttatgcaaggtcgagagaaagaaattttgaaaatgctcaaaagggtttcttctgaagaaag |
14543591 |
T |
|
| Q |
101 |
tgttgatgatgataacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaattg |
200 |
Q |
| |
|
|| |||||||||| | ||||| ||||||| | ||||||||| | ||| ||||||||||| ||||| ||||| ||| |||||| ||||||||| |||| |
|
|
| T |
14543592 |
tgccgatgatgatagcgttaacttagcttcgaatttaccaaaacttcccccaaaagaaaaagtttcattttttcaactttactcatcaataggagaatta |
14543691 |
T |
|
| Q |
201 |
tttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatt |
300 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14543692 |
tttcataaaagatgggctgttataagaatgatagctgttatgattcttggaattggacttggaatggtttatttaggtatgccactagctgttggaaatt |
14543791 |
T |
|
| Q |
301 |
tagggttcaacattta |
316 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
14543792 |
taggattcaacattta |
14543807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 316
Target Start/End: Original strand, 10404724 - 10404802
Alignment:
| Q |
238 |
ttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatttagggttcaacattta |
316 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||||| |||||||||||| || |||||||| ||||| ||| ||||||| |
|
|
| T |
10404724 |
ttatggttcttggtatgggaattggaatggtttattttggtatgccactcgccgttggaaacttaggattcgacattta |
10404802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 320
Target Start/End: Original strand, 10378725 - 10378820
Alignment:
| Q |
225 |
agaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatttagggttcaacatttatttg |
320 |
Q |
| |
|
|||||||| || || ||| ||||| ||||||||||||||||||| |||| ||| ||||| |||| |||||||| ||||| || ||||||||||| |
|
|
| T |
10378725 |
agaatgatggcggtaatggttcttggtattggaattggaatggtctattttggaatgcctttagccgttggaaacttaggttttgacatttatttg |
10378820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 10404503 - 10404560
Alignment:
| Q |
5 |
ttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaa |
62 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||| | |||||||||||| | |||||| |
|
|
| T |
10404503 |
ttatttctttgttaccgagtctccaagatggcttctaatgcaaggtagaaacaaagaa |
10404560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University