View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4976_low_2 (Length: 588)
Name: NF4976_low_2
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4976_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 337 - 565
Target Start/End: Original strand, 7577870 - 7578098
Alignment:
| Q |
337 |
tctcctacattcatcttctccaatgcatcgaagtttctttttaagatagatgcgggaattgaagccattattaaaggagaagagattgatgtatggagat |
436 |
Q |
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| T |
7577870 |
tctcctacattcatcttctccaatgcatcgaagtttctttttaagatagatgcgggaattcaagccattattaaaggagaagagattgatgtatggagat |
7577969 |
T |
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| Q |
437 |
gtgatcagtgataccatcgcccaaacataaaatgataccaagaagggtttgacaattggctattgtaannnnnnnnnaatgataaattttagtatatttg |
536 |
Q |
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| T |
7577970 |
gtgatcagtgataccatcgcccaaacataaaatgataccaagaagggtttgacaattggctattgtaatttttttttaatgataaattttagtatatttg |
7578069 |
T |
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| Q |
537 |
ttaattagtatgttaaggactttaaccat |
565 |
Q |
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| T |
7578070 |
ttaattagtatgttaaggacttaaaccat |
7578098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 4e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 20075860 - 20076093
Alignment:
| Q |
11 |
cagagatggaagcaacattgataagagatcaacaatagaaggaacacagtagtcctcaattgcttgcaccacaagttacagaagccaagcactagtgaag |
110 |
Q |
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| T |
20075860 |
cagagatggaagcagcattgataagagatcaacgacaggaggaacacagtggtcttcaattgcttgcaccacaagttacagaagccaagcactagtgaag |
20075959 |
T |
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| Q |
111 |
agttagttagagacaataactaacttccttgaatataggaaagttgggcagtgttctagtgtagatagtacatattagtcttacagtgcagtagcaataa |
210 |
Q |
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| T |
20075960 |
agttagttagagataataactaacttccttgaatataggaaagttaggcagtgatgtagtgtagctagtacatgttagtcttatagtgcagtagcaataa |
20076059 |
T |
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| Q |
211 |
ccaactataaaaagacaattttgtaactaacttca |
245 |
Q |
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| T |
20076060 |
ccaactat-aaaagacaattctataactaacttca |
20076093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 20078987 - 20079219
Alignment:
| Q |
12 |
agagatggaagcaacattgataagagatcaacaatagaaggaacacagtagtcctcaattgcttgcaccacaagttacagaagccaagcactagtgaaga |
111 |
Q |
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| T |
20078987 |
agagatggaagcagcattgataagagatcaacaataggacgaacacagtggtcttcaattgcttgcaccacaagttacagaagccaagcactagtgaaga |
20079086 |
T |
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| Q |
112 |
gttagttagagacaataactaacttccttgaatataggaaagttgggcagtgttctagtgtagatagtacatattagtcttacagtgcagtagcaataac |
211 |
Q |
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| T |
20079087 |
gttagttagagataataagtaacttccttgaatataggaaagttaggcagtgatgcagtgtagctagtacatgttagtcttatagtgcagtagcaataac |
20079186 |
T |
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| Q |
212 |
caactataaaaagacaattttgtaactaacttca |
245 |
Q |
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||||||| ||||||||||| |||||||||||||| |
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| T |
20079187 |
caactat-aaaagacaattctgtaactaacttca |
20079219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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