View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4976_low_20 (Length: 234)
Name: NF4976_low_20
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4976_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 24893674 - 24893883
Alignment:
| Q |
10 |
gtccaagaatatttcattagcaggcaaattcatattcaattctaccagaatctcaaaatcacaaaaaatgcacaagatttagaaaacactgaatcatggc |
109 |
Q |
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| T |
24893674 |
gtccaataatatttcattagcaggcaaattcatattcaattctaccagaatctcaaaatcacaaaaaatgcacaagatttagaaaacactgaatcatagc |
24893773 |
T |
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| Q |
110 |
attttacataacacaagtcacataaatatattcatttattttttcatgcttagaaaacattgttaaaaccatacttaatcatatagaatagaacaaaata |
209 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
24893774 |
attttacataacacaagtcacagaaatatattcatttattttttcatgcttagcaaacattgttaaaaccatacttaatcatacataatagaacaaaata |
24893873 |
T |
|
| Q |
210 |
gcatatatga |
219 |
Q |
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|||||||||| |
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| T |
24893874 |
gcatatatga |
24893883 |
T |
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