View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4976_low_5 (Length: 469)

Name: NF4976_low_5
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4976_low_5
NF4976_low_5
[»] chr7 (46 HSPs)
chr7 (19-339)||(388712-389042)
chr7 (19-300)||(43052606-43052889)
chr7 (19-300)||(42071816-42072100)
chr7 (19-300)||(5795064-5795349)
chr7 (19-300)||(15433968-15434260)
chr7 (19-300)||(48505916-48506212)
chr7 (19-300)||(3930844-3931137)
chr7 (19-300)||(37334024-37334295)
chr7 (19-142)||(28950018-28950143)
chr7 (19-186)||(7444117-7444283)
chr7 (79-293)||(36926785-36927009)
chr7 (19-186)||(45174913-45175083)
chr7 (125-300)||(26216106-26216289)
chr7 (207-300)||(28949886-28949979)
chr7 (209-300)||(5776258-5776349)
chr7 (19-79)||(5776355-5776415)
chr7 (19-79)||(26216045-26216105)
chr7 (285-376)||(48505795-48505891)
chr7 (285-377)||(26216314-26216411)
chr7 (285-340)||(37334320-37334375)
chr7 (285-340)||(42072125-42072180)
chr7 (285-339)||(5776179-5776233)
chr7 (229-300)||(665975-666046)
chr7 (242-293)||(45176204-45176255)
chr7 (285-339)||(5794985-5795039)
chr7 (286-339)||(43052915-43052968)
chr7 (284-339)||(28949807-28949862)
chr7 (284-339)||(36927040-36927095)
chr7 (285-339)||(665896-665950)
chr7 (285-339)||(3930765-3930819)
chr7 (242-300)||(3942135-3942193)
chr7 (285-339)||(45176287-45176341)
chr7 (204-237)||(45176129-45176162)
chr7 (242-293)||(27231674-27231725)
chr7 (285-340)||(33935550-33935605)
chr7 (227-300)||(222354-222425)
chr7 (337-379)||(3942282-3942324)
chr7 (242-300)||(20400955-20401013)
chr7 (285-314)||(15434285-15434314)
chr7 (285-326)||(44421963-44422004)
chr7 (228-300)||(44422030-44422100)
chr7 (338-378)||(15434312-15434352)
chr7 (336-376)||(21760583-21760623)
chr7 (332-376)||(33898944-33898988)
chr7 (336-376)||(37334383-37334423)
chr7 (242-282)||(44994110-44994150)
[»] chr4 (35 HSPs)
chr4 (19-300)||(44791371-44791655)
chr4 (19-300)||(53369407-53369700)
chr4 (19-293)||(45674559-45674840)
chr4 (19-300)||(49820705-49820994)
chr4 (19-300)||(12789680-12789973)
chr4 (19-180)||(19850451-19850612)
chr4 (19-300)||(50605766-50606020)
chr4 (19-123)||(48977328-48977434)
chr4 (204-300)||(19852894-19852990)
chr4 (204-300)||(53369788-53369884)
chr4 (205-300)||(48977493-48977588)
chr4 (219-300)||(21441512-21441593)
chr4 (285-339)||(53369909-53369963)
chr4 (285-339)||(19853015-19853069)
chr4 (285-339)||(21441618-21441672)
chr4 (285-339)||(49821019-49821073)
chr4 (285-339)||(50606045-50606099)
chr4 (232-326)||(38791676-38791770)
chr4 (285-339)||(45674872-45674926)
chr4 (288-339)||(44791292-44791343)
chr4 (285-339)||(12789601-12789655)
chr4 (242-300)||(9469731-9469789)
chr4 (285-339)||(48977613-48977667)
chr4 (337-376)||(36543882-36543921)
chr4 (242-300)||(36543735-36543793)
chr4 (242-300)||(43812185-43812243)
chr4 (122-192)||(49378098-49378168)
chr4 (336-378)||(51407947-51407989)
chr4 (285-326)||(22184540-22184581)
chr4 (228-300)||(32397826-32397899)
chr4 (336-377)||(45674935-45674976)
chr4 (245-293)||(11055361-11055409)
chr4 (336-376)||(21441681-21441721)
chr4 (336-380)||(28265669-28265713)
chr4 (336-376)||(53369972-53370012)
[»] chr3 (15 HSPs)
chr3 (19-300)||(32688897-32689181)
chr3 (19-300)||(41609606-41609900)
chr3 (19-300)||(23206435-23206729)
chr3 (19-181)||(39134082-39134244)
chr3 (285-339)||(41609925-41609979)
chr3 (285-376)||(32689206-32689309)
chr3 (285-337)||(23206359-23206411)
chr3 (337-383)||(39469524-39469570)
chr3 (242-300)||(45714679-45714737)
chr3 (241-293)||(44574479-44574531)
chr3 (255-326)||(33896797-33896868)
chr3 (242-277)||(39135308-39135343)
chr3 (285-332)||(52199466-52199513)
chr3 (242-293)||(54393578-54393629)
chr3 (245-293)||(52934769-52934817)
[»] chr2 (24 HSPs)
chr2 (19-300)||(34064432-34064717)
chr2 (19-293)||(36538375-36538661)
chr2 (19-288)||(41958862-41959143)
chr2 (19-300)||(26436095-26436366)
chr2 (19-300)||(33831176-33831439)
chr2 (23-192)||(27633463-27633635)
chr2 (27-139)||(20986394-20986506)
chr2 (208-300)||(27634585-27634683)
chr2 (285-339)||(41959180-41959234)
chr2 (285-339)||(27634708-27634762)
chr2 (285-339)||(33164029-33164083)
chr2 (252-300)||(33831459-33831507)
chr2 (285-339)||(26436391-26436445)
chr2 (285-339)||(33831532-33831586)
chr2 (285-339)||(36538693-36538747)
chr2 (285-336)||(34064742-34064793)
chr2 (242-293)||(39690124-39690175)
chr2 (242-300)||(34116301-34116359)
chr2 (242-293)||(27902573-27902624)
chr2 (284-326)||(44740545-44740587)
chr2 (336-376)||(27634771-27634811)
chr2 (336-376)||(33831595-33831635)
chr2 (336-376)||(36538756-36538796)
chr2 (336-376)||(41959243-41959283)
[»] chr1 (27 HSPs)
chr1 (19-300)||(37441314-37441605)
chr1 (19-300)||(47602990-47603283)
chr1 (19-339)||(35309332-35309661)
chr1 (19-300)||(36418821-36419113)
chr1 (157-300)||(32179726-32179870)
chr1 (204-300)||(24469945-24470041)
chr1 (19-123)||(32179618-32179724)
chr1 (285-379)||(47602859-47602965)
chr1 (285-339)||(24469866-24469920)
chr1 (285-339)||(7702872-7702926)
chr1 (285-339)||(37441235-37441289)
chr1 (214-300)||(7702760-7702847)
chr1 (285-339)||(32179895-32179949)
chr1 (286-339)||(36419139-36419192)
chr1 (242-300)||(46265072-46265130)
chr1 (242-300)||(7596347-7596405)
chr1 (242-300)||(23916764-23916822)
chr1 (242-300)||(42916242-42916300)
chr1 (242-293)||(15662903-15662954)
chr1 (242-293)||(35810672-35810723)
chr1 (242-293)||(40002848-40002899)
chr1 (336-377)||(7702935-7702976)
chr1 (337-378)||(42937175-42937216)
chr1 (245-293)||(15306450-15306498)
chr1 (141-181)||(24470073-24470113)
chr1 (336-376)||(32179958-32179998)
chr1 (336-376)||(36419201-36419241)
[»] scaffold0316 (3 HSPs)
scaffold0316 (19-300)||(19015-19308)
scaffold0316 (285-339)||(19333-19387)
scaffold0316 (336-376)||(19396-19436)
[»] chr5 (16 HSPs)
chr5 (19-291)||(22921769-22922053)
chr5 (19-300)||(18879913-18880204)
chr5 (19-300)||(27905816-27906110)
chr5 (19-285)||(29327752-29328037)
chr5 (19-191)||(3805058-3805222)
chr5 (285-339)||(27906135-27906189)
chr5 (285-339)||(29328081-29328134)
chr5 (285-339)||(18880229-18880283)
chr5 (242-300)||(20190712-20190770)
chr5 (242-277)||(3801515-3801550)
chr5 (249-300)||(20188934-20188985)
chr5 (242-300)||(32157065-32157123)
chr5 (336-372)||(18880292-18880328)
chr5 (336-376)||(27906198-27906238)
chr5 (336-376)||(29328143-29328183)
chr5 (242-282)||(30661053-30661093)
[»] chr6 (10 HSPs)
chr6 (19-293)||(8200361-8200647)
chr6 (33-300)||(10346454-10346733)
chr6 (19-181)||(7957375-7957526)
chr6 (295-339)||(8200678-8200722)
chr6 (285-336)||(10346758-10346809)
chr6 (242-300)||(9950888-9950946)
chr6 (242-300)||(10961924-10961982)
chr6 (246-300)||(5640380-5640434)
chr6 (242-300)||(27985018-27985076)
chr6 (336-376)||(8200731-8200771)
[»] chr8 (10 HSPs)
chr8 (96-293)||(453289-453488)
chr8 (19-300)||(11161322-11161584)
chr8 (387-458)||(41933123-41933194)
chr8 (285-339)||(11161609-11161663)
chr8 (19-64)||(453238-453283)
chr8 (287-339)||(453522-453574)
chr8 (242-300)||(34516092-34516150)
chr8 (266-340)||(43384812-43384886)
chr8 (298-340)||(1091777-1091819)
chr8 (336-376)||(453583-453623)
[»] scaffold0224 (1 HSPs)
scaffold0224 (242-300)||(7436-7494)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 46)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 388712 - 389042
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacaga--caaaaaatccaacaaaattcaattagttgtgaaca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||| ||||||||    
T  388712 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagagacaaaaaatcaaacaaaattcaattagctgtgaaca 388811  T
Q  117 aaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc---------ggccatatttgaattnnnnnnnttta 207  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||| ||||||||||||||||||||          |||| |||||||||       ||||    
T  388812 aaattcataatattcttttacttttaaactccaactgctc-tcccttcaagacaaaattgtattcagcgccatttgccacatttgaattaaattttttta 388910  T
Q  208 aaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctcgttaggt 307  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  388911 aaaactaactcaaattgatttatatatataatcgataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcgttaggt 389010  T
Q  308 tcatgaatcaagttcaacggattaaatatcga 339  Q
    ||||||| ||||||||||||||||||||||||    
T  389011 tcatgaaccaagttcaacggattaaatatcga 389042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 43052606 - 43052889
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacaga--caaaaaatccaacaaaattcaattagttgtgaaca 116  Q
    |||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  43052606 ataaattatataaagttaatagttgcataattacgaagaaaaatatctgatacaagtaacagagacaaaaaatccaacaaaattcaattagttgtgaaca 43052705  T
Q  117 aaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggccatatttgaattnnnnnnntttaaaaactaac 216  Q
    |||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||| |||||||||       |||||||||||||    
T  43052706 aaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagccacatttgaattaaaaaaatttaaaaactaac 43052805  T
Q  217 tcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  43052806 tcaaattgatttatatatataatcgataatcgagtcatctcatgaatctaacgagtcgaactatatgtagctcaagttcagctc 43052889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 42071816 - 42072100
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacag--acaaaa-aatccaacaaaattcaattagttgtgaac 115  Q
    |||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||  |||||| |||||||||||||||||||||||||||||    
T  42071816 ataaattatatatagttaaagattgcataagtacgaagaaaaatatctgatacatgtaacagggacaaaaaaatccaacaaaattcaattagttgtgaac 42071915  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggccatatttgaattnnnnnnntttaaaaactaa 215  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| |||| |||||||||       ||||||||||||    
T  42071916 aaaattcataatattcttttacttttaaactccaactgttcttcctttcaagacaaaattgtattcagccacatttgaattaaatttttttaaaaactaa 42072015  T
Q  216 ctcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42072016 ctcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 42072100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 5795349 - 5795064
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca----aaaaatccaacaaaattcaattagttgtgaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    |||||||||||||||||||||||||||||||    
T  5795349 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagagacaaaaaaaatccaacaaaattcaattagttgtgaa 5795250  T
Q  115 caaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggccatatttgaattnnnnnnntttaaaaacta 214  Q
     ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||| |||||||||       |||||||||||    
T  5795249 taaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagccacatttgaattaaatttttttaaaaacta 5795150  T
Q  215 actcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  5795149 actcaaattgatttatatatataatcgataatcgagccatctcatgaacctaacgagttgaactatatgtagctcaagttcagctc 5795064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 15433968 - 15434260
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacaga--caaaaaatccaacaaaattcaattagttgtgaaca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  15433968 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatcttatacaagtaacagagacaaaaaatccaacaaaattcaattagttgtgaaca 15434067  T
Q  117 aaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc---------ggccatatttgaattnnnnnnnttta 207  Q
    |||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||          |||| |||||||||       ||||    
T  15434068 aaattcataatattcttttacttttaaactcccactgctcttcccttcaagacaaaattgtattcagccacatttgccacatttgaattaataaaattta 15434167  T
Q  208 aaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||    
T  15434168 aaaactaactaaaattgatttatatatataatcgataatcgagccatctcatgaagctaacgagtcgaactagatgtagctcaagttcagctc 15434260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 48506212 - 48505916
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacag------acaaaaaatccaacaaaattcaattagttgtg 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||      | ||||||||||||||||||||||||||||||    
T  48506212 ataaattatataaagttaaagattgcataaatacgaagaaaaatatctgatacaagtaacagagacaaaaaaaaaatccaacaaaattcaattagttgtg 48506113  T
Q  113 aacaaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc---------ggccatatttgaattnnnnnnn 203  Q
    |||||||||||||||||||||||||||||||| ||| |||| |||||| ||||||||||||||||||||          |||| |||||||||           
T  48506112 aacaaaattcataatattcttttacttttaaactccaactgttcttcccttcaagacaaaattgtattcagccacatttgccacatttgaattaattttt 48506013  T
Q  204 tttaaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  48506012 tttaaaaactaactcaaattgatttatatatataatcaataatcgagccatctcatgtacctaacgagtcgaactatatgtagctcaagttcagctc 48505916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 3931137 - 3930844
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca---aaaaatccaacaaaattcaattagttgtgaac 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||    
T  3931137 ataaattatataaagttaaagattgcataaatacgaagaaaaatatctgatacaagtaacagagacaaaaaaatccaacaaaattcaattagttgtgaac 3931038  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc---------ggccatatttgaattnnnnnnnttt 206  Q
    ||||||||||||||||||||||||||||| ||| |||  |||||| ||||||||||||||||||||          |||| |||||||||       |||    
T  3931037 aaaattcataatattcttttacttttaaactccaactagtcttcccttcaagacaaaattgtattcagccacatttgccacatttgaattaatttttttt 3930938  T
Q  207 aaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||    
T  3930937 aaaaactaactcaaattgatttatatatataatcaataatcgagccatctcatgtacctaacgagttgaactatatgtagctcaagttcagctc 3930844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 37334024 - 37334295
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacaga--caaaaaatccaacaaaattcaattagttgtgaaca 116  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||                     |    
T  37334024 ataaattatataaagttaaaggttgcataaatacaaagaaaaatatctgatacaagtaacagagacaaaaaatccaac---------------------a 37334102  T
Q  117 aaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggc---------catatttgaattnnnnnnnttta 207  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||| ||         || |||||||||       ||||    
T  37334103 aaattcataatattcttttacttataaactccaactgctcttcccttcaagacaaaattgtattcagcgacatttgccacatttgaattaatttttttta 37334202  T
Q  208 aaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  37334203 aaaactaactcaaattgatttatatatataatcgacaatcgagccatctcatgaacctaatgagtcgaactatatgtagctcaagttcagctc 37334295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 28950143 - 28950018
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaac--agacaaaaaatccaacaaaattcaattagttgtgaaca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| | ||||||    
T  28950143 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagagacaaaaaatccaacaaaattcaattagctatgaaca 28950044  T
Q  117 aaattcataatattcttttactttta 142  Q
    ||||||||||||||||||||||||||    
T  28950043 aaattcataatattcttttactttta 28950018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 7444117 - 7444283
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagacaaaaaatccaacaaaattcaattagttgtgaacaaa 118  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||| |    
T  7444117 ataaattatataaagttaaaggttgcataaatacgaa-aaaaatatctgatacaagtaacagacaaaaaatccaacaaaattcaattagccgagaacata 7444215  T
Q  119 attcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggcca 186  Q
    ||||||||||||||| |||||  ||| ||| | |||||| || || ||||||||||||||||| ||||    
T  7444216 attcataatattcttctacttccaaactccaattgctctccccttaaagacaaaattgtattcagcca 7444283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 79 - 293
Target Start/End: Original strand, 36926785 - 36927009
Alignment:
Q  79 agacaaaaaat-ccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgt 177  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||||||||||| |||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  36926785 agacaaaaaattccaacaaaattctattagctgtgaacaaaattcataatat-cttttacttttaaactccaactgctcttcccttcaagacaaaattgt 36926883  T
Q  178 attcggccatatttg---------aattnnnnnnntttaaaa-actaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaa 267  Q
    ||||  ||| |||||         ||||       ||||||| ||||||||||||||||||||||||||||||||||||| ||  ||||||||| |||||    
T  36926884 attcaaccacatttgtcacatttgaattaattttttttaaaaaactaactcaaattgatttatatatataatcaataatcaagcaatctcatgagcctaa 36926983  T
Q  268 cgagtcgaactatatgtagctcaagt 293  Q
    ||||||||||||||||||||||||||    
T  36926984 cgagtcgaactatatgtagctcaagt 36927009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 45174913 - 45175083
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacaga---caaaaaatccaacaaaattcaattagttgtgaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    ||||||||||||||||||||| ||| || ||||    
T  45174913 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaatagagacaaaaaaatccaacaaaattcaagtagctgagaac 45175012  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggcca 186  Q
    |||||||||||||||||| ||||| |||| ||| | |||||| || || ||||||||||||||||| ||||    
T  45175013 aaaattcataatattcttctacttctaaactccaattgctctcccctttaagacaaaattgtattcagcca 45175083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 125 - 300
Target Start/End: Original strand, 26216106 - 26216289
Alignment:
Q  125 aatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggc---------catatttgaattnnnnnnnttt-aaaaacta 214  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||         || |||||||||       ||| ||||||||    
T  26216106 aatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagcgacatttgccacatttgaattaatttttttttaaaaacta 26216205  T
Q  215 actcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||  ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26216206 actcaaattgatttata--tataatcgataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 26216289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 207 - 300
Target Start/End: Complemental strand, 28949979 - 28949886
Alignment:
Q  207 aaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  28949979 aaaaactacctcaaattgatttatatatataatcgataatcgagtcatttcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 28949886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 5776349 - 5776258
Alignment:
Q  209 aaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  5776349 aaactaactcaaattgatttttatatataatcgataatcgagtcatctcatgaaccgaacgagtcgaactatatgtagctcaagttcagctc 5776258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 5776415 - 5776355
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaaca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5776415 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaaca 5776355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 26216045 - 26216105
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaaca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26216045 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaaca 26216105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 376
Target Start/End: Complemental strand, 48505891 - 48505795
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaata-----tcgaactataatcgagttggttcagttcattatcagcccta 376  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||| |||     ||||||||||||||||||||||| ||||||| |||||||||    
T  48505891 agctcaagtccagctcattaggttcatgaaccaagttcaacggattagatattgagtcgaactataatcgagttggttcggttcattgtcagcccta 48505795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 285 - 377
Target Start/End: Original strand, 26216314 - 26216411
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatat-----cgaactataatcgagttggttcagttcattatcagccctac 377  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||     |||||||||||| ||||||||| |||||||  |||||||||    
T  26216314 agctcaagtccagctcgttaggttcataaaccaagttcaacggattaaatatcgtgacgaactataatcaagttggttcggttcattgccagccctac 26216411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 37334320 - 37334375
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcgaa 340  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37334320 agctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgaa 37334375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 42072125 - 42072180
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcgaa 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42072125 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattagatatcgaa 42072180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 5776233 - 5776179
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5776233 agctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcga 5776179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 666046 - 665975
Alignment:
Q  229 atatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||| | ||||||||| |||||||||||||||||||||||| ||||||||||||||| | ||||||    
T  666046 atatatataaacgataatcgagccatctcatgaacctaacgagtcgagctatatgtagctcaaattcagctc 665975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 45176204 - 45176255
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagt 293  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45176204 ataatcgagtcatctcatgaacctaacgagtcgaattatatgtagctcaagt 45176255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 5795039 - 5794985
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  5795039 agctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcga 5794985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 43052915 - 43052968
Alignment:
Q  286 gctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  43052915 gctcaagtccagctcattaggttcatgaaccaagttcaacggattaaatatcga 43052968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 28949862 - 28949807
Alignment:
Q  284 tagctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||| |||||||    
T  28949862 tagctcaattccagctcgttaggttcatgaaccaagttcaacggattagatatcga 28949807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 284 - 339
Target Start/End: Original strand, 36927040 - 36927095
Alignment:
Q  284 tagctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||    
T  36927040 tagctcaagtccaactcgttaggttcatgaaccaagttcaacggattagatatcga 36927095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 665950 - 665896
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||||| ||| || |||||||||||||||||    
T  665950 agctcaagtccagctcgttaggttcatgaaccaaatttaacggattaaatatcga 665896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 3930819 - 3930765
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||| | |||||||||||||||| |||||||    
T  3930819 agctcaagtccagctcgttaggttcatggaccaagttcaacggattagatatcga 3930765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 3942135 - 3942193
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||| |||||| |||||| ||||||| || |||||||||| ||||||    
T  3942135 ataatcgagtcatctcgtgaaccaaacgagccgaactacatatagctcaagttcagctc 3942193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 45176287 - 45176341
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||| |||| ||||||||| |||||||||| ||||||||||||||||| ||||||    
T  45176287 agctaaagttcagctcgtttggttcatgaaccaagttcaacggattaattatcga 45176341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 45176129 - 45176162
Alignment:
Q  204 tttaaaaactaactcaaattgatttatatatata 237  Q
    ||||||||||||||||||||||||||||||||||    
T  45176129 tttaaaaactaactcaaattgatttatatatata 45176162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 27231725 - 27231674
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagt 293  Q
    ||||||||||||||||||||||| |||||||| ||||| || ||||| ||||    
T  27231725 ataatcgagtcatctcatgaaccaaacgagtcaaactacatatagcttaagt 27231674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 33935550 - 33935605
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcgaa 340  Q
    ||||||||| ||||||||| |||||||||| |||||||||||  |||| |||||||    
T  33935550 agctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattatcgaa 33935605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 222425 - 222354
Alignment:
Q  227 ttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||  || ||||||| | |||||||||| | |||||||||||||||  ||||||||| ||||||    
T  222425 ttatatatataat--attatcgagttaactcatgaaccaaccgagtcgaactatataaagctcaagttcagctc 222354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 379
Target Start/End: Original strand, 3942282 - 3942324
Alignment:
Q  337 cgaactataatcgagttggttcagttcattatcagccctactc 379  Q
    |||||| ||||||||||||||| ||||||| ||||||||||||    
T  3942282 cgaactttaatcgagttggttcggttcattgtcagccctactc 3942324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 20400955 - 20401013
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||| ||| || ||||| |||| |||||||||||||||||||| ||||||| ||||||    
T  20400955 ataattgagccaactcattaaccaaacgagtcgaactatatgtaactcaagttcagctc 20401013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 15434285 - 15434314
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaa 314  Q
    ||||||||||||||||||||||||||||||    
T  15434285 agctcaagtccagctcgttaggttcatgaa 15434314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 44422004 - 44421963
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacg 326  Q
    ||||||||| ||||||||| |||||||||| |||||||||||    
T  44422004 agctcaagttcagctcgtttggttcatgaaccaagttcaacg 44421963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 44422100 - 44422030
Alignment:
Q  228 tatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||  || |||||| || |||||||||| | |||||||||||||||  ||||||||| ||||||    
T  44422100 tatatatataat--attatcgagccaactcatgaaccaaccgagtcgaactatataaagctcaagttcagctc 44422030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 378
Target Start/End: Original strand, 15434312 - 15434352
Alignment:
Q  338 gaactataatcgagttggttcagttcattatcagccctact 378  Q
    ||||||||||||||||||||| |||||||  ||||||||||    
T  15434312 gaactataatcgagttggttcggttcattgccagccctact 15434352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 21760623 - 21760583
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagcccta 376  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  21760623 tcgaactattttcgagttggttcggttcattatcagcccta 21760583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 33898988 - 33898944
Alignment:
Q  332 aatatcgaactataatcgagttggttcagttcattatcagcccta 376  Q
    |||||||||||||  |||||||||||| ||||||| |||||||||    
T  33898988 aatatcgaactattttcgagttggttcggttcattgtcagcccta 33898944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 37334383 - 37334423
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagcccta 376  Q
    ||||||||||||||||||||||| ||||||| ||| |||||    
T  37334383 tcgaactataatcgagttggttcggttcattgtcaacccta 37334423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 44994150 - 44994110
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatat 282  Q
    ||||||||||||||||||||||  || ||||||||||||||    
T  44994150 ataatcgagtcatctcatgaacaaaatgagtcgaactatat 44994110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 44791655 - 44791371
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca---aaaaatccaacaaaattcaattagttgtgaac 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |   ||||||||||||||||| ||||||||||||||    
T  44791655 ataaattatataaagttaaagattgcataaatacgaagaaaaatatctgatgcaagtaacagagacaaaaaaatccaacaaaatttaattagttgtgaac 44791556  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggccatatttgaattnnnnnnntttaaaaactaa 215  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||| |||||||||       ||||||||||||    
T  44791555 aaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagccacatttgaattaattttttttaaaaactaa 44791456  T
Q  216 ctcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  44791455 ctcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaaattcagctc 44791371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 53369407 - 53369700
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca---aaaaatccaacaaaattcaattagttgtgaac 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |   |||||||||||||||||||||||| |||||||    
T  53369407 ataaattatataaagttaaaggttgcataaatacgaaaaaaaatatctgatacaagtaacagagacaaaaaaatccaacaaaattcaattagctgtgaac 53369506  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc---------ggccatatttgaattnnnnnnnttt 206  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||          |||| |||||||||       |||    
T  53369507 aaaattcataatattcttttacttttaaactccaactgctcttcctttcaagacaaaattgtattcaaccacatttgccacatttgaattaatttttttt 53369606  T
Q  207 aaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53369607 aaaaactaactcaaattgatttatatatataatcgataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 53369700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 45674559 - 45674840
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacaga--caaaaaa-----tccaacaaaattcaattagttgt 111  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  |||||||     |||||||||||||||||||||||    
T  45674559 ataaattatataaagttaaaggttgcataaatacaaagaaaaatatctgatacaagtaatagagacaaaaaaaaacatccaacaaaattcaattagttgt 45674658  T
Q  112 gaacaaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggccatatttgaattnnnnnnntttaaaaa 211  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||  ||| ||| |||||       ||||||||    
T  45674659 gaacaaaattcataatattcttttacttttaaactccaattgctcttcccttcaagacaaaattgtattcaaccacattagaattaattttttttaaaaa 45674758  T
Q  212 ctaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagt 293  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45674759 ctaactcaaattgatttatatatataatcgataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagt 45674840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 49820705 - 49820994
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca--aaaaatccaacaaaattcaattagttgtgaaca 116  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |  |||||| ||||||||||||||||||||||||||    
T  49820705 ataaattatataaagttaaaggttgcataa-tacgaagaaaaatatctcatacaagtaacagagataaaaaattcaacaaaattcaattagttgtgaaca 49820803  T
Q  117 aaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggc---------catatttgaattnnnnnnnttta 207  Q
    |||||||||||||||||||||||||||| | | ||||||||||| |||||||||||||||||||| ||         || |||||||||       ||||    
T  49820804 aaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagccacatttgtcacatttgaattaaattttttta 49820903  T
Q  208 aaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||  ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49820904 aaaactaactcaaattgatt--tatatataatcgataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 49820994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 12789973 - 12789680
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca---aaaaatccaacaaaattcaattagttgtgaac 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||    
T  12789973 ataaattatataaagttaaagattgcataaatacgaagaaaaatatctgatacaagtaacagagacaaaaaaatccaacaaaattcaattagttgtgaac 12789874  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc---------ggccatatttgaattnnnnnnnttt 206  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| | ||||||||||||||||||||          |||| ||||||| |       ||     
T  12789873 aaaattcataatattcttttacttttaaactccaactgctctttccttcaagacaaaattgtattcagccacatttgccacatttgaaataattttttta 12789774  T
Q  207 aaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||   |||||| ||| |||||||||||||||||||| ||||||    
T  12789773 aaaaactaactcaaattgatttatatatataatcaataatcgagccatctcattttcctaactagttgaactatatgtagctcaagttcagctc 12789680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 19850451 - 19850612
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagacaaaaaatccaacaaaattcaattagttgtgaacaaa 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  19850451 ataaattatataaagttaaaggttgtataaatacgaagaaaaatatctgatacaagtaacagagacaaaatccaacaaaattcaattagttgtgaacaaa 19850550  T
Q  119 attcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtatt 180  Q
    |||||||||||||||||||||||||| ||| ||||||||||| ||||||| |||||||||||    
T  19850551 attcataatattcttttacttttaaactccaactgctcttcccttcaagagaaaattgtatt 19850612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 50605766 - 50606020
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagacaaaaaatccaacaaaattcaattagttgtgaacaaa 118  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||| | ||||       |||| |||           ||||    
T  50605766 ataaattatataaagttaaaa-ttgcataaatacgaagaaaaatatctgatacaagtaatagagacaaaa-------aaatccaa-----------caaa 50605846  T
Q  119 attcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggccatatttgaattnnnnnnntttaaaaactaactc 218  Q
    ||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||| |||||||||        ||||||||||||||    
T  50605847 attcacaatattcttttacttttaaattccaattgctcttccattcaagacaaaattgtattcagccacatttgaatt--------ttaaaaactaactc 50605938  T
Q  219 aaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  50605939 aaattgatttatatatataatcaataatcgagccatctcataaacctaacgagtcgaactatatgtagctcaagttcagctc 50606020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 48977328 - 48977434
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaac--agacaaaaaatccaacaaaattcaattagttgtgaaca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  48977328 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatttgatacaagtaacaaagacaaaaaatccaacaaaattcaattagctgtgaaca 48977427  T
Q  117 aaattca 123  Q
    |||||||    
T  48977428 aaattca 48977434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 204 - 300
Target Start/End: Original strand, 19852894 - 19852990
Alignment:
Q  204 tttaaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19852894 tttaaaaactaactcaaattgatttatatatataatcgataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 19852990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 204 - 300
Target Start/End: Original strand, 53369788 - 53369884
Alignment:
Q  204 tttaaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53369788 tttaaaaactaactcaaattgatttatatatataatcgataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 53369884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 205 - 300
Target Start/End: Original strand, 48977493 - 48977588
Alignment:
Q  205 ttaaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||| |||||||||||||||||||||||||||| ||||||    
T  48977493 ttaaaaactaactcaaattgatttatatatataatcgataatcgagctatctcatgaaccgaacgagtcgaactatatgtagctcaagttcagctc 48977588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 219 - 300
Target Start/End: Original strand, 21441512 - 21441593
Alignment:
Q  219 aaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21441512 aaattgatttatatatataatcaataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 21441593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 53369909 - 53369963
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53369909 agctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcga 53369963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 19853015 - 19853069
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  19853015 agctcaagtccatctcgttaggttcatgaaccaagttcaacggattaaatatcga 19853069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 21441618 - 21441672
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  21441618 agctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcga 21441672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 49821019 - 49821073
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  49821019 agcttaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcga 49821073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 50606045 - 50606099
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  50606045 agctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcga 50606099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 326
Target Start/End: Original strand, 38791676 - 38791770
Alignment:
Q  232 tatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctcgttaggttcatgaatcaagttcaacg 326  Q
    ||||| ||| || ||||||||| |||||||||| | |||||| ||||||||  ||||||||| |||||| || |||||||||| |||||||||||    
T  38791676 tatattatcgattatcgagtcagctcatgaaccaaccgagtcaaactatatacagctcaagttcagctcatttggttcatgaaccaagttcaacg 38791770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 45674872 - 45674926
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||| |||||||    
T  45674872 agctcaagtccagctcgttaggttcatgaaccaagttcgacggattagatatcga 45674926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 44791343 - 44791292
Alignment:
Q  288 tcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||| |||||||||||||||||||| |||||||||||||||| |||||||    
T  44791343 tcaagtgcagctcgttaggttcatgaaccaagttcaacggattagatatcga 44791292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 12789655 - 12789601
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||| |||||||    
T  12789655 agctcaagttcagctcgttaggttcataaaccaagttcaacggattagatatcga 12789601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 9469731 - 9469789
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||||||||||| |||||| || | ||| |||||| ||||||    
T  9469731 ataatcgagtcatctcatgaacctaacgaatcgaaccatctatagttcaagttcagctc 9469789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 48977613 - 48977667
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||| ||||||||| |||||||||||||  |||||||||| ||||||||||||    
T  48977613 agctcatgtccagctcattaggttcatgaacgaagttcaacgaattaaatatcga 48977667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 376
Target Start/End: Original strand, 36543882 - 36543921
Alignment:
Q  337 cgaactataatcgagttggttcagttcattatcagcccta 376  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  36543882 cgaactatattcgagttggttcagttcattgtcagcccta 36543921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 36543735 - 36543793
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||||||||| | |||||| || | ||| |||||| ||||||    
T  36543735 ataatcgagtcatctcatgaacctaacaaatcgaaccatctatagttcaagttcagctc 36543793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 43812243 - 43812185
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||| |||||  |||||||||||||| || ||| |||||| ||||||    
T  43812243 ataatcgagtcatctcgtgaactaaacgagtcgaactacatctagttcaagttcagctc 43812185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 49378168 - 49378098
Alignment:
Q  122 cataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggccatatttg 192  Q
    |||||||||||| |||||  ||| ||| | ||||||||| || ||||||||||||||||| |||| |||||    
T  49378168 cataatattcttctacttccaaactccaattgctcttcccttaaagacaaaattgtattcagccacatttg 49378098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 378
Target Start/End: Complemental strand, 51407989 - 51407947
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagccctact 378  Q
    |||||||||  |||||||||||||||||||| |||||||||||    
T  51407989 tcgaactattttcgagttggttcagttcattgtcagccctact 51407947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 22184540 - 22184581
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacg 326  Q
    ||||||||| ||||||||| |||||||||| |||||||||||    
T  22184540 agctcaagttcagctcgtttggttcatgaaccaagttcaacg 22184581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 32397899 - 32397826
Alignment:
Q  228 tatatatata-atcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||| || ||||||||||||||||| |||| | |||||||||| ||| || ||| |||||| ||||||    
T  32397899 tatatatatatataaataatcgagtcatctcgtgaatcaaacgagtcgagctacatatagttcaagttcagctc 32397826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 45674935 - 45674976
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagccctac 377  Q
    ||||||||||||||||||||||| |||||||  |||||||||    
T  45674935 tcgaactataatcgagttggttcggttcattgccagccctac 45674976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 11055409 - 11055361
Alignment:
Q  245 atcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagt 293  Q
    ||||||||| |||||||||| | |||||||||||||||  |||||||||    
T  11055409 atcgagtcagctcatgaaccaatcgagtcgaactatatacagctcaagt 11055361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 21441681 - 21441721
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagcccta 376  Q
    ||||||||||||||||||||||| ||||||| ||| |||||    
T  21441681 tcgaactataatcgagttggttcggttcattgtcaacccta 21441721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 380
Target Start/End: Complemental strand, 28265713 - 28265669
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagccctactca 380  Q
    |||||||||  ||||||||||||||||||||  ||||||||||||    
T  28265713 tcgaactattttcgagttggttcagttcattgccagccctactca 28265669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 53369972 - 53370012
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagcccta 376  Q
    ||||||||||||||||||||||| |||||||  ||||||||    
T  53369972 tcgaactataatcgagttggttcggttcattgccagcccta 53370012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 32688897 - 32689181
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca---aaaaatccaacaaaattcaattagttgtgaac 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |   |||||| |||||||||||||||||||||||||    
T  32688897 ataaattatataaagttaaagattgcataaatacgaagaaaaatatctgatacaagtaacagagacaaaaaaattcaacaaaattcaattagttgtgaac 32688996  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggccatatttgaattnnnnnnntttaaaaactaa 215  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||| |||||||||       ||||||||||||    
T  32688997 aaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagccacatttgaattaaaaaattttaaaaactaa 32689096  T
Q  216 ctcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  32689097 ctcaaattgatttatatatataatcaataattgagtcatctcatgaacttaacgagtcgaactatatgtagctcaagttcagctc 32689181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 41609606 - 41609900
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca---aaaaatccaacaaaattcaattagttgtgaac 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||| |||||||    
T  41609606 ataaattatataaagttaaatgttgcataaatacgaagaaaaatatctgatacaagtaacagagacaaaaaaatccaacaaaattcaattagctgtgaac 41609705  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggcca---------tatttgaattnnnnnnnttt 206  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||          |||||||||       |||    
T  41609706 aaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagccacatttgcctcatttgaattaatttttttt 41609805  T
Q  207 -aaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
     |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  41609806 aaaaaactaactcaaattgatttatatatataatcgataatcgagtcatctcatgaacccaacgagtcgaactatatgtagctcaagttcagctc 41609900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 23206729 - 23206435
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca---aaaaatccaacaaaattcaattagttgtgaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||| |||||| |||||||    
T  23206729 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagagacaaaaaaatccaacaaaatttaattagctgtgaac 23206630  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtatt---cg------gccatatttgaatt-nnnnnnntt 205  Q
    ||||||||||||||||||||||||||||| ||| |||| | || | |||||||||||||||||||   ||      |||| |||||||||        ||    
T  23206629 aaaattcataatattcttttacttttaaactccaactgttttttccttcaagacaaaattgtattaagcgacatttgccacatttgaattaatttttttt 23206530  T
Q  206 taaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||  ||||||||||||||||||| |||| ||||||    
T  23206529 taaaaactaactcaaattgatttatatatataatcgataattgagtcatctcatgaacctaataagtcgaactatatgtagcttaagttcagctc 23206435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 39134082 - 39134244
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagacaaaaaatccaacaaaattcaattagttgtgaacaaa 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||| |    
T  39134082 ataaattatataaagttaacggttgcataaatacgaagaaaaatatctgatacaagtaacagacaaaaaatccaacaaaattcaattaactgataacata 39134181  T
Q  119 attcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc 181  Q
    ||||||||||||||| |||||  ||| ||| | |||||| |  |||||||| |||||||||||    
T  39134182 attcataatattcttctacttccaaactccaattgctctcctcttcaagacgaaattgtattc 39134244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 41609925 - 41609979
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41609925 agctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcga 41609979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 376
Target Start/End: Original strand, 32689206 - 32689309
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga------------actataatcgagttggttcagttcattatcagc 372  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||            ||||||||||||||||||| ||||||| |||||    
T  32689206 agctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgtcagc 32689305  T
Q  373 ccta 376  Q
    ||||    
T  32689306 ccta 32689309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 23206411 - 23206359
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatc 337  Q
    ||||||||||||||||||||||||||||||  ||||||||| |||||||||||    
T  23206411 agctcaagtccagctcgttaggttcatgaacaaagttcaacagattaaatatc 23206359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 39469570 - 39469524
Alignment:
Q  337 cgaactataatcgagttggttcagttcattatcagccctactcatta 383  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||    
T  39469570 cgaactatattcgagttggttcagttcattatcagccctacttatta 39469524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 45714679 - 45714737
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||| |||||| |||||||||||||| || ||| |||||| ||||||    
T  45714679 ataatcgagtcatctcgtgaaccaaacgagtcgaactacatatagttcaagttcagctc 45714737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 44574479 - 44574531
Alignment:
Q  241 aataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagt 293  Q
    ||||||||||  | |||||||||| |||||| |||||||||||||||||||||    
T  44574479 aataatcgagctaactcatgaaccaaacgagccgaactatatgtagctcaagt 44574531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 326
Target Start/End: Original strand, 33896797 - 33896868
Alignment:
Q  255 ctcatgaacctaacgagtcgaactatatgtagctcaagtccagctcgttaggttcatgaatcaagttcaacg 326  Q
    |||||||||  ||||||||||||||||| || ||||||| |||||| || ||||||  |||||| |||||||    
T  33896797 ctcatgaactaaacgagtcgaactatatataactcaagttcagctcatttggttcacaaatcaaattcaacg 33896868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 39135308 - 39135343
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaac 277  Q
    ||||||||||||||||||||||||||||| ||||||    
T  39135308 ataatcgagtcatctcatgaacctaacgaatcgaac 39135343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 52199466 - 52199513
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaa 332  Q
    ||||||||| ||||||||| |||||||||| ||||||||||| |||||    
T  52199466 agctcaagttcagctcgtttggttcatgaaccaagttcaacgaattaa 52199513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 54393629 - 54393578
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagt 293  Q
    |||||||||||||||| |||||| |||||||||||||| || ||| ||||||    
T  54393629 ataatcgagtcatctcgtgaaccaaacgagtcgaactacatatagttcaagt 54393578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 52934769 - 52934817
Alignment:
Q  245 atcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagt 293  Q
    ||||||||| |||||||||| | ||||||||||||||| ||| ||||||    
T  52934769 atcgagtcagctcatgaaccaatcgagtcgaactatatatagatcaagt 52934817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 34064432 - 34064717
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca----aaaaatccaacaaaattcaattagttgtgaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |    |||||||||||||||||||||||||||||||    
T  34064432 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatcagatacgagtaacagagacaaaaaaaatccaacaaaattcaattagttgtgaa 34064531  T
Q  115 caaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggccatatttgaattnnnnnnntttaaaaacta 214  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||| |||||||||       |||||||||||    
T  34064532 caaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagccacatttgaattaattttttttaaaaacta 34064631  T
Q  215 actcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34064632 actcaaattgatttatatatataatcgataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 34064717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 36538375 - 36538661
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca---aaaaatccaacaaaattcaattagttgtgaac 115  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |   ||||||||||||||||||||||| ||||||||    
T  36538375 ataaattatataaagttaaagattgcataaatatgaagaaaaatatctgatacaagtaacagagacaaaaaaatccaacaaaattcaattaattgtgaac 36538474  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggc---------catatttgaattnnnnnnnttt 206  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||         || |||||||||       |||    
T  36538475 aaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagccacatttgtcacatttgaattaatttttttt 36538574  T
Q  207 aaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagt 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36538575 aaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagt 36538661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 41958862 - 41959143
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca---aaaaatccaacaaaattcaattagttgtgaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||| |||||||    
T  41958862 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagagacaaaaaaatccaacaaaattcaattagctgtgaac 41958961  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc---------ggccatatttgaattnnnnnnnttt 206  Q
    ||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||          |||| |||||||||       |||    
T  41958962 aaaattcataatattcttttaattttaaactccaactgctcttcccttcaagacaaaattgtattcagccacatttgccacatttgaattaaattttttt 41959061  T
Q  207 aaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagct 288  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||    
T  41959062 aaaaactaactcaaattgatttatatatataatcgataatcgagccatctcattaacctaacgagtcgaactatatgtagct 41959143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 26436095 - 26436366
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacaga--caaaaaatccaacaaaattcaattagttgtgaaca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  26436095 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatatgatacaagtaacagagacaaaaaatccaacaaaattcaattagctgtgaaca 26436194  T
Q  117 aaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggccatatttgaattnnnnnnntttaaaaactaac 216  Q
    |||||||||||||||||||||||||| | ||| ||||||||||| |||||||||||||||||||| |||| |||||||||       |||              
T  26436195 aaattcataatattcttttacttttatactccaactgctcttcccttcaagacaaaattgtattcagccacatttgaattaatttttttt---------- 26436284  T
Q  217 tcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
      |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26436285 --aaattgatttatatatataatcgataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 26436366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 33831176 - 33831439
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagacaaaaaatccaacaaaattcaattagttgtgaacaaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||       |||| |||           ||||    
T  33831176 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctaatacaagtaacagagacaaaa-------aaatccaa-----------caaa 33831257  T
Q  119 attcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggccatatttgaattnnnnnnntttaaaaactaactc 218  Q
    ||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||| |||||||||       |||||||||||||||    
T  33831258 atttataatattcttttacttttaaactccaactgctcttccattcaagacaaaattgtattcagccacatttgaattaaatttttttaaaaactaactc 33831357  T
Q  219 aaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33831358 aaattgatttatatatataatcgataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 33831439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 27633463 - 27633635
Alignment:
Q  23 attatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca---aaaaatccaacaaaattcaattagttgtgaacaaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |   |||||||||||||||||||||||| |||||||||||    
T  27633463 attatataaagttaaaggttgcataaatacgaagaaaaatattagatacaagtaacagagacaaaaaaatccaacaaaattcaattagctgtgaacaaaa 27633562  T
Q  120 ttcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggccatatttg 192  Q
    ||||||||||| |||||||| |||| ||| | || | |||| |||||||||||||||||||| |||| |||||    
T  27633563 ttcataatattattttacttctaaactccaattgttattcccttcaagacaaaattgtattcagccacatttg 27633635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 20986394 - 20986506
Alignment:
Q  27 tataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagacaaaaaatccaacaaaattcaattagttgtgaacaaaattcataa 126  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||    
T  20986394 tataaagttaaaggttgcataaatacgaaaaaaaatatctgatacaagtaacagacaaaaaatccaacaaaattcaattagccgagaacataattcataa 20986493  T
Q  127 tattcttttactt 139  Q
    ||||||| |||||    
T  20986494 tattcttctactt 20986506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 27634585 - 27634683
Alignment:
Q  208 aaaactaactcaaattgatttata------tatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||||||      ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  27634585 aaaactaactcaaattgatttatatatatatatataatcaataatggagtcatctcatgaacctaacgagtcaaactatatgtagctcaagttcagctc 27634683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 41959180 - 41959234
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41959180 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattagatatcga 41959234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 27634708 - 27634762
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  27634708 agctcaagtccagctcgttaggttcatgaactaagttcaacggattaaatatcga 27634762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 33164083 - 33164029
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  33164083 agctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcga 33164029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 33831459 - 33831507
Alignment:
Q  252 catctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33831459 catctcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 33831507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 26436391 - 26436445
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||| || |||||||||||||||||||| ||||||||||||||||||||||||    
T  26436391 agctcacgttcagctcgttaggttcatgaaccaagttcaacggattaaatatcga 26436445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 33831532 - 33831586
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  33831532 agctcaagtccagctcgttaggttcatgaaccaaattcaacggattagatatcga 33831586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 36538693 - 36538747
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||| |||||||    
T  36538693 agctcaagtccaactcgttaggttcatgaaccaagttcaacggattagatatcga 36538747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 34064742 - 34064793
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatat 336  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  34064742 agctcaagtccagctcgttaggttcatgaactaagttcaacggattagatat 34064793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 39690124 - 39690175
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagt 293  Q
    ||||||||||||||||||||||| |||||||||||||| || ||||||||||    
T  39690124 ataatcgagtcatctcatgaaccaaacgagtcgaactacatatagctcaagt 39690175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 34116359 - 34116301
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||| |||||||| |||||||||||||| || |||||||||| ||||||    
T  34116359 ataatcgagtcatcacatgaaccaaacgagtcgaactacatatagctcaagttcagctc 34116301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 27902624 - 27902573
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagt 293  Q
    |||||||||| ||||| |||||| |||||||||||||| || ||||||||||    
T  27902624 ataatcgagttatctcgtgaaccaaacgagtcgaactacatatagctcaagt 27902573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 44740587 - 44740545
Alignment:
Q  284 tagctcaagtccagctcgttaggttcatgaatcaagttcaacg 326  Q
    |||||||||| ||||||||| |||||||||| |||||||||||    
T  44740587 tagctcaagttcagctcgtttggttcatgaaccaagttcaacg 44740545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 27634771 - 27634811
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagcccta 376  Q
    ||||||||||||||||||||||| |||||||  ||||||||    
T  27634771 tcgaactataatcgagttggttcggttcattgccagcccta 27634811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 33831595 - 33831635
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagcccta 376  Q
    ||||||||||||||||||||||| |||||||  ||||||||    
T  33831595 tcgaactataatcgagttggttcggttcattgccagcccta 33831635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 36538756 - 36538796
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagcccta 376  Q
    ||||||||||||||||||||||  ||||||| |||||||||    
T  36538756 tcgaactataatcgagttggtttggttcattgtcagcccta 36538796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 41959243 - 41959283
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagcccta 376  Q
    ||||||||||||||||||| ||| ||||||| |||||||||    
T  41959243 tcgaactataatcgagttgattcggttcattgtcagcccta 41959283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 37441605 - 37441314
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca-aaaaatccaacaaaattcaattagttgtgaacaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||    
T  37441605 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagagacaaaaatccaacaaaattcaattagctgtgaacaa 37441506  T
Q  118 aattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc---------ggccatatttgaattnnnnnnntttaa 208  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||          |||| |||||||||       |||||    
T  37441505 aattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagccacatttgccacatttgaattaaatttttttaa 37441406  T
Q  209 aaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  37441405 aaactaactcaaattgatttatatatataatcgataatcgagacatctcattaacctaacgagtcgaactatatgtagctcaagttcagctc 37441314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 47603283 - 47602990
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca---aaaaatccaacaaaattcaattagttgtgaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||| |||||||    
T  47603283 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagagacaaaaaaatccaacaaaattcaattagctgtgaac 47603184  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc---------ggccatatttgaattnnnnnnnttt 206  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||          |||| |||||||||       |||    
T  47603183 aaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcaaccacatttgccacatttgaattaaattttttt 47603084  T
Q  207 aaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47603083 aaaaactaactcaaattgatttatatatataatcgataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 47602990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 35309332 - 35309661
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacaga--caaaaaatccaacaaaattcaattagttgtgaaca 116  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||  |||||||| ||||||||||||||||| ||||||||    
T  35309332 ataaattatataaagttaaaggttgcataaatacgaaggaaaatatttcatacaagtaacagagacaaaaaattcaacaaaattcaattagctgtgaaca 35309431  T
Q  117 aaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc---------ggccatatttgaattnnnnnnnttta 207  Q
    |||||||||||||||||||||||||||| | | ||||||||||| || |||||||||||| ||||          |||| |||||||||       ||||    
T  35309432 aaattcataatattcttttacttttaaacttcaactgctcttccctttaagacaaaattgaattcagccacatttgccacatttgaattaaaaaatttta 35309531  T
Q  208 aaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctcgttaggt 307  Q
    ||||||||||||||||||||  ||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  35309532 aaaactaactcaaattgatt--tatatataatcgataagcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcgtgaggt 35309629  T
Q  308 tcatgaatcaagttcaacggattaaatatcga 339  Q
    ||||||| ||||||||||||||||||||||||    
T  35309630 tcatgaaccaagttcaacggattaaatatcga 35309661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 36418821 - 36419113
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacaga--caaaaaatccaacaaaattcaattagttgtgaaca 116  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||| ||||||||    
T  36418821 ataaattatataaagttaaaggttgcataattacgaagaaaaatatctgatacaagtaacagagacaaaaaatcaaacaaaattcaattagctgtgaaca 36418920  T
Q  117 aaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc---------ggccatatttgaattnnnnnnnttta 207  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||||||          |||| |||||||||       ||||    
T  36418921 aaattcataatattattttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagccacatttgccacatttgaattaaaaaaattta 36419020  T
Q  208 aaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36419021 aaaactaattcaaattgatttatatatataatcgataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 36419113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 157 - 300
Target Start/End: Original strand, 32179726 - 32179870
Alignment:
Q  157 ttcctttcaagacaaaattgtattcggccatatttgaattnnnnnnn-tttaaaaactaactcaaattgatttatatatataatcaataatcgagtcatc 255  Q
    |||| ||||||||||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  32179726 ttcccttcaagacaaaattgtattcggccacatttgaattaaaaaaaatttaaaaactaactcaaattgatttatatatataatcgataattgagtcatc 32179825  T
Q  256 tcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||    
T  32179826 tcatgaaccgaacgagtcgaactatatgtagctcaagttcagctc 32179870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 204 - 300
Target Start/End: Complemental strand, 24470041 - 24469945
Alignment:
Q  204 tttaaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24470041 tttaaaaactaactcaaattgatttatatatataatcgataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 24469945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 32179618 - 32179724
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaac--agacaaaaaatccaacaaaattcaattagttgtgaaca 116  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||| || ||||||||    
T  32179618 ataaattatataaagttaaaggttgcataaatacgaaaaaaaatatctgatacaagtaacaaagacaaaaaatccaacaaaattcaataagctgtgaaca 32179717  T
Q  117 aaattca 123  Q
    |||||||    
T  32179718 aaattca 32179724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 285 - 379
Target Start/End: Complemental strand, 47602965 - 47602859
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaata------------tcgaactataatcgagttggttcagttcattatcagc 372  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||            ||||||||||||||||||||||| ||||||| |||||    
T  47602965 agctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgtcagc 47602866  T
Q  373 cctactc 379  Q
    |||||||    
T  47602865 cctactc 47602859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 24469920 - 24469866
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24469920 agctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcga 24469866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 7702872 - 7702926
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  7702872 agctcaagtccagctcgttagcttcatgaaccaagttcaacggattaaatatcga 7702926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 37441289 - 37441235
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  37441289 agctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcga 37441235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 214 - 300
Target Start/End: Original strand, 7702760 - 7702847
Alignment:
Q  214 aactcaaattgatt-tatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||| || |||||||||||||||||||||||  |||||||||||||||||||| ||| |||  |||||| |||| ||||||    
T  7702760 aactcaaattgtttatatatatataatcaataatcgagctatctcatgaacctaacgagtagaattatgcgtagcttaagttcagctc 7702847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 32179895 - 32179949
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||    
T  32179895 agctcaagtccagctcattaggtttatgaaccaagttcaacggattaaatatcga 32179949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 36419139 - 36419192
Alignment:
Q  286 gctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  36419139 gctcaagtccagctcattaggttcatgaaccaagttcgacggattaaatatcga 36419192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 46265130 - 46265072
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||||| |||||||||| |||||| ||| |||||| ||||||    
T  46265130 ataatcgagtcatctcatgaaccaaacgagtcgacctatatatagttcaagttcagctc 46265072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 7596347 - 7596405
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||| | |||||||||||||| || ||| |||||| ||||||    
T  7596347 ataatcgagtcatctcatgaatcaaacgagtcgaactacatatagttcaagttcagctc 7596405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 23916764 - 23916822
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||| |||||| |||||||||||||| || | |||||||| ||||||    
T  23916764 ataatcgagtcatctcgtgaaccaaacgagtcgaactacatattgctcaagttcagctc 23916822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 42916300 - 42916242
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||||| |||||||||| |||||| | | |||||| ||||||    
T  42916300 ataatcgagtcatctcatgaaccaaacgagtcgacctatatatggttcaagttcagctc 42916242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 15662903 - 15662954
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagt 293  Q
    ||||||||||||||||||||||| || ||||||||||| || ||||| ||||    
T  15662903 ataatcgagtcatctcatgaaccaaaagagtcgaactacatatagcttaagt 15662954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 35810672 - 35810723
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagt 293  Q
    |||||||||||||||| |||||| |||||||||||||| || ||| ||||||    
T  35810672 ataatcgagtcatctcgtgaaccaaacgagtcgaactacatatagttcaagt 35810723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 40002848 - 40002899
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagt 293  Q
    |||||||||||||||| |||| | |||||||||||||| || ||||||||||    
T  40002848 ataatcgagtcatctcgtgaatcaaacgagtcgaactacatatagctcaagt 40002899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 7702935 - 7702976
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagccctac 377  Q
    ||||||||||||||||||||||| |||||||  |||||||||    
T  7702935 tcgaactataatcgagttggttcggttcattgccagccctac 7702976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 378
Target Start/End: Original strand, 42937175 - 42937216
Alignment:
Q  337 cgaactataatcgagttggttcagttcattatcagccctact 378  Q
    |||||| |||||||||||||||||||||||  ||||||||||    
T  42937175 cgaactctaatcgagttggttcagttcattgccagccctact 42937216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 15306450 - 15306498
Alignment:
Q  245 atcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagt 293  Q
    ||||||||| |||||||||| | |||||||||||||||  |||||||||    
T  15306450 atcgagtcagctcatgaaccaatcgagtcgaactatatacagctcaagt 15306498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 24470113 - 24470073
Alignment:
Q  141 taaattccgactgctcttcctttcaagacaaaattgtattc 181  Q
    |||| ||| ||||||||||| ||||||||||||||||||||    
T  24470113 taaactccaactgctcttcccttcaagacaaaattgtattc 24470073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 32179958 - 32179998
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagcccta 376  Q
    ||||||||||||||||||||||| |||||||  ||||||||    
T  32179958 tcgaactataatcgagttggttcggttcattgccagcccta 32179998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 36419201 - 36419241
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagcccta 376  Q
    ||||||||||||||||||||||| |||||||  ||||||||    
T  36419201 tcgaactataatcgagttggttcggttcattgccagcccta 36419241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 183; Significance: 8e-99; HSPs: 3)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 19015 - 19308
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca---aaaaatccaacaaaattcaattagttgtgaac 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||| ||||||||||||||    
T  19015 ataaattatataaagttaaagattgcataaatacgaagaaaaatatctgatacaagtaacagagacaaaaaaatccaacaaaatttaattagttgtgaac 19114  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc---------ggccatatttgaattnnnnnnnttt 206  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||          |||| |||||||||       |||    
T  19115 aaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagccacatttgccacatttgaattaaaaaatttt 19214  T
Q  207 aaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  19215 aaaaactaactcaaattgatttatatatataatcaataatcgagccatctcatgaacctaacgagtcgaattatatgtagctcaagttcagctc 19308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 19333 - 19387
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||| |||||||    
T  19333 agctcaagtccagctcgttaggttcatgaaccaagttcaaaggattagatatcga 19387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 19396 - 19436
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagcccta 376  Q
    ||||||||||||||||||||||| |||||||  ||||||||    
T  19396 tcgaactataatcgagttggttcggttcattgccagcccta 19436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 8e-96; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 22921769 - 22922053
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca---aaaaatccaacaaaattcaattagttgtgaac 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||    
T  22921769 ataaattatataaagttaaagattgcataaatacgaagaaaaatatctgatacaagtaacagagacaaaaaaatccaacaaaattcaattagttgtgaac 22921868  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggc---------catatttgaattnnnnnnnttt 206  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |||||| ||         || |||||||||       |||    
T  22921869 aaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaatcgtattcagccacatttgtcacatttgaattaatttttttt 22921968  T
Q  207 aaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaa 291  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  22921969 aaaaactaactcaaattgatttatatatataatcaataatcgagccatctcatgaacctaacgagtctaactatatgtagctcaa 22922053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 18879913 - 18880204
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca---aaaaatccaacaaaattcaattagttgtgaac 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||    
T  18879913 ataaattatataaagttaaagattgcataaatacgaagaaaaatatctgatacaagtaacagagacaaaaaaatccaacaaaattcaattagttgtgaac 18880012  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc---------ggccatatttgaattnnnnnnnttt 206  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||          |||| |||||||||       |||    
T  18880013 aaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcaaccacatttgccacatttgaatt-aaatttttt 18880111  T
Q  207 aaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||    
T  18880112 aaaaact-actcaaattgatttatatatataatcaataatcgagccatctcatgtacctaacgagttgaactatatgtagctcaagttcagctc 18880204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 27905816 - 27906110
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca---aaaaatccaacaaaattcaattagttgtgaac 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||| |||||||    
T  27905816 ataaattatataaagttaaagattgcataaatacgaagaaaaatatctgatacaagtaacagagacaaaaaaatccaacaaaattcaattagctgtgaac 27905915  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc---------ggccatatttgaatt-nnnnnnntt 205  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||||||||||||||          |||| |||||||||        ||    
T  27905916 aaaattcataatattcttttacttttaaactccaactgctcttctcttcaagacaaaattgtattcagccacatttgccacatttgaattattttttttt 27906015  T
Q  206 taaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  27906016 taaaaactaactcaaattgatttatatatataatcaataatcgagccatctcatgagcctaacaagtcgaactatatgtagctcaagttcagctc 27906110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 29327752 - 29328037
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca---aaaaatccaacaaaattcaattagttgtgaac 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||| |||||||    
T  29327752 ataaattatataaagttaaaggttacataaatacgaagaaaaatatctgatacaagtaacagagacaaaaaaatccaacaaaattcaattagctgtgaac 29327851  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc---------ggccatatttgaatt-nnnnnnntt 205  Q
    ||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||          |||| |||||||||        ||    
T  29327852 aaaattcataatattcttttacttttaaactccaattgctcttcccttcaagacaaaattgtattcaatcacatttgccacatttgaattaaattttttt 29327951  T
Q  206 taaaaactaactcaaattgatt------tatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgta 285  Q
    ||||||||||||||||||||||      |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  29327952 taaaaactaactcaaattgatttatatatatatatatattcgataatcgagtcatctcatgaacctaacgagtcgaactatatgta 29328037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 3805222 - 3805058
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaaga---aaaatatctgatacaagtaacagacaaaaaatccaacaaaattcaattagttgtgaac 115  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||           |||||||||||||||||| ||||||||| |  |||    
T  3805222 ataaattatataaagttaaaggttgcataaatacgaagaaaaaaaatatctgat-----------acaaaaaatccaacaaaactcaattagtcgataac 3805134  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggccatattt 191  Q
    | ||| ||||||||| || |||||  ||| ||| | |||||| || || ||||||||||||||||| |||| ||||    
T  3805133 agaatgcataatatttttctacttccaaactccaattgctctccccttaaagacaaaattgtattcagccacattt 3805058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 27906135 - 27906189
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  27906135 agctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcga 27906189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 29328081 - 29328134
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29328081 agctcaagtccagct-gttaggttcatgaatcaagttcaacggattaaatatcga 29328134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 18880229 - 18880283
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  18880229 agcttaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcga 18880283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 20190770 - 20190712
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||||| ||||| |||||||| || |||||||||| ||||||    
T  20190770 ataatcgagtcatctcatgaaccaaacgattcgaactacatatagctcaagttcagctc 20190712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 3801550 - 3801515
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaac 277  Q
    ||||||||||||||||||||||||||||| ||||||    
T  3801550 ataatcgagtcatctcatgaacctaacgaatcgaac 3801515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 20188934 - 20188985
Alignment:
Q  249 agtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||| |||||| |||||||||||||| || |||||||||| ||||||    
T  20188934 agtcatctcgtgaaccaaacgagtcgaactacatatagctcaagttcagctc 20188985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 32157123 - 32157065
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||| |||||| |||||| || | ||| |||||| ||||||    
T  32157123 ataatcgagtcatctcatgaacttaacgaatcgaaccatctatagttcaagttcagctc 32157065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 18880292 - 18880328
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagc 372  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  18880292 tcgaactataatcgagttggttcggttcattgtcagc 18880328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 27906198 - 27906238
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagcccta 376  Q
    ||||||||||||||||||||||| |||||||  ||||||||    
T  27906198 tcgaactataatcgagttggttcggttcattgccagcccta 27906238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 29328143 - 29328183
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagcccta 376  Q
    |||||||||||||||||| |||| ||||||| |||||||||    
T  29328143 tcgaactataatcgagtttgttcggttcattgtcagcccta 29328183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 30661093 - 30661053
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatat 282  Q
    ||||||||||||  ||||||||| |||||||||||||||||    
T  30661093 ataatcgagtcagttcatgaaccaaacgagtcgaactatat 30661053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 8200361 - 8200647
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagaca---aaaaatccaacaaaattcaattagttgtgaac 115  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |   |||||||||||||| ||||||||| |||||||    
T  8200361 ataaattatataaagttaaaggttgcataaacacgaagaaaaatatctgatacaagtaacagagagaaaaaaatccaacaaagttcaattagctgtgaac 8200460  T
Q  116 aaaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc---------ggccatatttgaattnnnnnnnttt 206  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||          |||| |||||||||       |||    
T  8200461 aaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcaaccacatttgccacatttgaattaatttttttt 8200560  T
Q  207 aaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagt 293  Q
    | |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8200561 ataaactaactcaaattgatttatatatataatcgataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagt 8200647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 33 - 300
Target Start/End: Original strand, 10346454 - 10346733
Alignment:
Q  33 gttaaaggttgcataaatacgaagaaaaatatctgatacaagtaaca--gacaaaa-aatccaacaaaattcaattagttgtgaacaaaattcataatat 129  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10346454 gttaaagattgcataaatacgaagaaaaatatctgatacaagtaacaaagacaaaaaaatccaacaaaattcaattagttgtgaacaaaattcataatat 10346553  T
Q  130 tcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc---------ggccatatttgaattnnnnnnntttaaaaactaactcaa 220  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||          |||| |||||||||       |||||||| ||||||||    
T  10346554 tcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagccacatttgccacatttgaattaaaaaattttaaaaaataactcaa 10346653  T
Q  221 attgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||    
T  10346654 attgatttatatatataatcaataatcgagtcatctcatgaacttaacgagtcgaactatatgtaactcaagttcagctc 10346733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 7957375 - 7957526
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacagacaaaaaatccaacaaaattcaattagttgtgaacaaa 118  Q
    ||||||||||||||||||||||||| ||||||||||| |||| ||||||||           |||||||||||||||||| ||||||||||| ||||| |    
T  7957375 ataaattatataaagttaaaggttgtataaatacgaaaaaaattatctgat-----------acaaaaaatccaacaaaactcaattagttgagaacaga 7957463  T
Q  119 attcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattc 181  Q
    || |||||||||||| |||||  ||| ||| | |||||| |  || ||||| |||||||||||    
T  7957464 atgcataatattcttctacttccaaactccaattgctctcctctttaagactaaattgtattc 7957526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 8200678 - 8200722
Alignment:
Q  295 cagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8200678 cagctcgttaggttcatgaatcaagttcaacggattaaatatcga 8200722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 10346758 - 10346809
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatat 336  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  10346758 agctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatat 10346809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 9950946 - 9950888
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||| |||||| ||||||| |||||| || |||||||||| ||||||    
T  9950946 ataatcgagtcatctcgtgaaccaaacgagttgaactacatatagctcaagttcagctc 9950888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 10961982 - 10961924
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||| |||||| |||||||||||||| || ||| |||||| ||||||    
T  10961982 ataatcgagtcatctcgtgaaccaaacgagtcgaactacatatagttcaagttcagctc 10961924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 5640434 - 5640380
Alignment:
Q  246 tcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||  |||||| ||||||||||||||||| ||| |||||| ||||||    
T  5640434 tcgagtcatcttgtgaaccaaacgagtcgaactatatatagttcaagttcagctc 5640380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 27985076 - 27985018
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||| |||||  |||||||||||||| || ||| |||||| ||||||    
T  27985076 ataatcgagtcatctcgtgaactaaacgagtcgaactacatctagttcaagttcagctc 27985018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 8200731 - 8200771
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagcccta 376  Q
    ||||||||||||||||||||||  ||||||| |||||||||    
T  8200731 tcgaactataatcgagttggtttggttcattgtcagcccta 8200771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 9e-71; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 96 - 293
Target Start/End: Original strand, 453289 - 453488
Alignment:
Q  96 aaattcaattagttgtgaacaaaattcataatattcttttacttttaaattccgactgctct--tcctttcaagacaaaattgtattcggccatatttga 193  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||  ||| |||||||||||||||||||| |||| ||||||    
T  453289 aaattcaattagttatgaacaaaattcataatattcttttacttttaaactccaactgctctcttcccttcaagacaaaattgtattcagccacatttga 453388  T
Q  194 attnnnnnnntttaaaaactaactcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagt 293  Q
    |||       ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  453389 attaattttttttaaaaactaactcaaattgatttatatatataatcgataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagt 453488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 11161322 - 11161584
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacaagtaacaga--caaaaaatccaacaaaattcaattagttgtgaaca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||  |||||||||||||                     |    
T  11161322 ataaattatataaagttaaaggttgcataaatacgaagaaaaatatctgatacatgtagcagagacaaaaaatccaac---------------------a 11161400  T
Q  117 aaattcataatattcttttacttttaaattccgactgctcttcctttcaagacaaaattgtattcggccatatttgaattnnnnnnntttaaaaactaac 216  Q
    |||||||||||||| ||||||||||||| | | ||||||||||| |||||||||||||||||||| |||| |||||||||       |||||||||||||    
T  11161401 aaattcataatattattttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagccacatttgaattaaacaaatttaaaaactaac 11161500  T
Q  217 tcaaattgatttatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11161501 tcaaattgatttatatatataatccataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 11161584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 387 - 458
Target Start/End: Original strand, 41933123 - 41933194
Alignment:
Q  387 tatttttatatgctatgccatttgatattttatgaaactctagcgtccgcatttgttttgttattctctctg 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41933123 tatttttatatgctatgccatttgatattttatgaaactctagcgtccgcatttgttttgttattctctctg 41933194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 11161609 - 11161663
Alignment:
Q  285 agctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11161609 agctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcga 11161663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 453238 - 453283
Alignment:
Q  19 ataaattatataaagttaaaggttgcataaatacgaagaaaaatat 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  453238 ataaattatataaagttaaaggttgcataaatacgaagaaaaatat 453283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 453522 - 453574
Alignment:
Q  287 ctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcga 339  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  453522 ctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcga 453574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 34516092 - 34516150
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    |||||||||||||||| |||||| |||||||||||||| || ||| |||||| ||||||    
T  34516092 ataatcgagtcatctcgtgaaccaaacgagtcgaactacatatagttcaagttcagctc 34516150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 43384812 - 43384886
Alignment:
Q  266 aacgagtcgaactatatgtagctcaagtccagctcgttaggttcatgaatcaagttcaacggattaaatatcgaa 340  Q
    ||||||||||||||||  |||||||||| || ||| || |||||||||| ||| ||||||| ||||| |||||||    
T  43384812 aacgagtcgaactatacatagctcaagttcaactcatttggttcatgaaccaacttcaacgaattaattatcgaa 43384886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 1091777 - 1091819
Alignment:
Q  298 ctcgttaggttcatgaatcaagttcaacggattaaatatcgaa 340  Q
    |||||| |||||||||||||||||||||| ||||| |||||||    
T  1091777 ctcgtttggttcatgaatcaagttcaacgaattaattatcgaa 1091819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 453583 - 453623
Alignment:
Q  336 tcgaactataatcgagttggttcagttcattatcagcccta 376  Q
    ||||||||||||||||||||||| |||||||  ||||||||    
T  453583 tcgaactataatcgagttggttcggttcattgccagcccta 453623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 7494 - 7436
Alignment:
Q  242 ataatcgagtcatctcatgaacctaacgagtcgaactatatgtagctcaagtccagctc 300  Q
    ||||||||||||||||||||||| |||||||||| |||||| | | |||||| ||||||    
T  7494 ataatcgagtcatctcatgaaccaaacgagtcgacctatatatggttcaagttcagctc 7436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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