View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4976_low_7 (Length: 388)

Name: NF4976_low_7
Description: NF4976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4976_low_7
NF4976_low_7
[»] chr3 (7 HSPs)
chr3 (26-121)||(33714855-33714950)
chr3 (26-112)||(33708983-33709069)
chr3 (26-104)||(37587571-37587649)
chr3 (26-110)||(36811038-36811122)
chr3 (26-121)||(37580820-37580915)
chr3 (182-370)||(54346540-54346729)
chr3 (59-104)||(36875615-36875660)
[»] chr7 (3 HSPs)
chr7 (216-370)||(29760083-29760238)
chr7 (182-370)||(8019949-8020138)
chr7 (34-119)||(18724354-18724443)
[»] chr8 (5 HSPs)
chr8 (182-370)||(1635803-1635992)
chr8 (30-115)||(17636407-17636492)
chr8 (30-115)||(18315279-18315364)
chr8 (222-370)||(456600-456749)
chr8 (77-115)||(21235613-21235651)
[»] chr2 (3 HSPs)
chr2 (182-370)||(13186693-13186882)
chr2 (204-371)||(7305309-7305477)
chr2 (37-115)||(32785778-32785856)
[»] chr1 (4 HSPs)
chr1 (182-370)||(23949503-23949692)
chr1 (30-115)||(52082589-52082674)
chr1 (31-115)||(52092786-52092870)
chr1 (204-370)||(23085137-23085305)
[»] chr4 (5 HSPs)
chr4 (204-370)||(34390032-34390199)
chr4 (59-115)||(8187097-8187153)
chr4 (58-115)||(1548430-1548487)
chr4 (30-115)||(8184036-8184121)
chr4 (75-115)||(1519148-1519188)
[»] chr6 (1 HSPs)
chr6 (75-115)||(12102319-12102359)
[»] chr5 (3 HSPs)
chr5 (211-370)||(34080972-34081132)
chr5 (30-114)||(41901542-41901626)
chr5 (30-115)||(32267483-32267568)


Alignment Details
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 33714950 - 33714855
Alignment:
Q  26 agggcaactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagttgatcaa 121  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33714950 agggcaactctttgaaatcgcatacaatgcgccatcatcaattcttgagtttgacaagttcagcacctccagtttggaaacttcaaagttgatcaa 33714855  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 33709069 - 33708983
Alignment:
Q  26 agggcaactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaa 112  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  33709069 agggcaactctttgagattgcatacaatgcaccatcatcaattcttgagtctgacaagttcagcacctccagtttggaaacctcaaa 33708983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 37587649 - 37587571
Alignment:
Q  26 agggcaactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaa 104  Q
    ||||||| |||||||||||||||||||| |   |||||||||||||||||||||||||||||  |||||||||||||||    
T  37587649 agggcaaatctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttggaa 37587571  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 36811122 - 36811038
Alignment:
Q  26 agggcaactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttca 110  Q
    ||||||| |||||||||| ||||||| ||| | || |||||||||||| || |||||||||| |||||||||||||||| |||||    
T  36811122 agggcaaatctttgagattgcatacagtgctctattatcaattcttgaatgggacaagttcaacacctccagtttggaagcttca 36811038  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 37580915 - 37580820
Alignment:
Q  26 agggcaactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagttgatcaa 121  Q
    ||||||| || |||||||| |||||||| |   ||||||||||||||||| |||||||||||  ||||| ||||||||| ||||| ||||||||||    
T  37580915 agggcaaatcattgagatcacatacaatactttatcatcaattcttgagtttgacaagttcaatacctcgagtttggaagcttcatagttgatcaa 37580820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 182 - 370
Target Start/End: Complemental strand, 54346729 - 54346540
Alignment:
Q  182 tccaagcccaagtagaatccctacatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaa 281  Q
    ||||| ||||| || | |||| |||||| |||| |||| ||||||||| ||||||||||||| |  || |||||||| ||| |  |||||  ||||| ||    
T  54346729 tccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaa 54346630  T
Q  282 aaaggccaccacacccaacaat-atactcatatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaac 370  Q
    ||||||| ||||| ||| |||| |  | |||||| |||||||||  |||||||||||| |||||||| || ||| | || ||||||||||    
T  54346629 aaaggccgccacatccagcaataacccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaac 54346540  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 36875615 - 36875660
Alignment:
Q  59 atcatcaattcttgagtgtgacaagttcagcacctccagtttggaa 104  Q
    |||||| |||||||||||||||||||||| ||||||||| ||||||    
T  36875615 atcatcgattcttgagtgtgacaagttcaccacctccagattggaa 36875660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 216 - 370
Target Start/End: Original strand, 29760083 - 29760238
Alignment:
Q  216 gtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaaaaaggccaccacacccaacaat-atactcatatc 314  Q
    |||| ||||||||||||||||||||||| |||||||| ||||| |||||| ||| | |||||||||||||||||||||||   |||||  ||| || |||    
T  29760083 gtaaagcatcacaaactccaatcttcttagcataaccattgatccattttccgtttgtatcacaaaaaaggccaccacacttgacaatcctacccagatc 29760182  T
Q  315 tttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaac 370  Q
    |||||||| |  |||| ||||||||||||||||  | ||| |||||||||||||||    
T  29760183 tttgcaagaaccatcattattaagtttgatccattcttctcgcggtcgcttccaac 29760238  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 182 - 370
Target Start/End: Original strand, 8019949 - 8020138
Alignment:
Q  182 tccaagcccaagtagaatccctacatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaa 281  Q
    ||||| ||||| || | |||| |||||| |||| |||| ||||||||| ||||||||||||| |  || |||||||| ||| |  |||||  ||||| ||    
T  8019949 tccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaa 8020048  T
Q  282 aaaggccaccacacccaacaat-atactcatatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaac 370  Q
    ||||||| ||||| |||||||| |  | |||||| |||||||||  |||||||||||| |||||||| || ||| | || ||||||||||    
T  8020049 aaaggccgccacatccaacaataacccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaac 8020138  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 18724443 - 18724354
Alignment:
Q  34 tctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagtt----cagcacctccagtttggaaacttcaaagttgatc 119  Q
    |||||||||||||||||| | |   |||||||||||||||||||||||||||    || |||||| ||||||||| ||||||||||||||    
T  18724443 tctttgagatcgcatacagtactttatcatcaattcttgagtgtgacaagttcaaccaacacctctagtttggaagcttcaaagttgatc 18724354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 370
Target Start/End: Complemental strand, 1635992 - 1635803
Alignment:
Q  182 tccaagcccaagtagaatccctacatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaa 281  Q
    ||||| ||||| || | |||| |||||| |||| |||| ||||||||| ||||||||||||| |  || |||||||| |||||  |||||  ||||| ||    
T  1635992 tccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatttaccgtctgaatcacgaa 1635893  T
Q  282 aaaggccaccacacccaacaatatactc-atatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaac 370  Q
    ||||||| ||||| ||| |||||  | | ||||| |||||||||  |||||||||||| |||||||| || ||||| || ||||||||||    
T  1635892 aaaggccgccacatccagcaataacccctatatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttccaac 1635803  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 17636492 - 17636407
Alignment:
Q  30 caactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 115  Q
    ||||||||||||||| ||||||||||  |||| |||| || ||  ||||||||||||| |||||||| ||||| ||||||||||||    
T  17636492 caactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagtt 17636407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 18315364 - 18315279
Alignment:
Q  30 caactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 115  Q
    ||||||||||||||| |||| | |||  ||||||||| | |||  ||||||||||||| |||||||||||||| ||||| ||||||    
T  18315364 caactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagtt 18315279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 370
Target Start/End: Original strand, 456600 - 456749
Alignment:
Q  222 catcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaaaaaggccaccacacccaacaat-atactcatatctttgca 320  Q
    |||||||||||||||||||||| |  || |||||||| ||| |  |||||  ||||| ||||||||| ||||| ||| |||| |  | |||||| |||||    
T  456600 catcacaaactccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgccacatccagcaataacccccatatccttgca 456699  T
Q  321 agcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaac 370  Q
    ||||  ||||||||||||  ||||||| || ||| | || ||||||||||    
T  456700 agcaccatcactattaagcctgatccaaccctctcgaggccgcttccaac 456749  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 21235613 - 21235651
Alignment:
Q  77 tgacaagttcagcacctccagtttggaaacttcaaagtt 115  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  21235613 tgacaagttcaacacctccagtttgggaacttcaaagtt 21235651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 182 - 370
Target Start/End: Complemental strand, 13186882 - 13186693
Alignment:
Q  182 tccaagcccaagtagaatccctacatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaa 281  Q
    ||||| ||||| || | |||| |||||| |||| |||| ||||||||| ||||||||||||| |  || |||||||| ||| |  |||||| ||||| ||    
T  13186882 tccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctaaatcacgaa 13186783  T
Q  282 aaaggccaccacacccaacaat-atactcatatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaac 370  Q
    ||||||| ||||| ||| |||| |  | |||||| |||||||||  |||||||||||| |||||| | || ||| | || ||||||||||    
T  13186782 aaaggccgccacatccagcaataacccccatatccttgcaagcaccatcactattaagcttgatcaaaccttctcgaggccgcttccaac 13186693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 371
Target Start/End: Original strand, 7305309 - 7305477
Alignment:
Q  204 acatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaaaaaggccaccacacccaacaat 303  Q
    |||||| |||| |||| ||||||||| |||||||||| || |  ||  ||||||| ||| |  |||||  ||||  ||||||||||||||| ||| ||||    
T  7305309 acatctcagcatgtaaggcatcacaagctccaatctttttagtgtagtctttgatccatctaccgtctgaatcatgaaaaaggccaccacatccagcaat 7305408  T
Q  304 atactc--atatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaact 371  Q
    | ||||  ||||| |||||||||  |||||||||||| |||||||| || ||||| || |||| ||||||    
T  7305409 a-actcccatatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgctaccaact 7305477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 32785856 - 32785778
Alignment:
Q  37 ttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 115  Q
    |||||||| |||| | |||  |||||||||||||||  ||||||||||||| |||||| ||||||| | ||| ||||||    
T  32785856 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagtt 32785778  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 182 - 370
Target Start/End: Complemental strand, 23949692 - 23949503
Alignment:
Q  182 tccaagcccaagtagaatccctacatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaa 281  Q
    ||||| ||||| || | |||| |||||| |||| |||| ||||||||| ||||||||||||| |  || |||||||| ||| |  |||||  ||||| ||    
T  23949692 tccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaa 23949593  T
Q  282 aaaggccaccacacccaacaat-atactcatatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaac 370  Q
    ||||||| ||||| ||| |||| |  | |||||| |||||||||  |||||||||||| |||||||| || ||| | || ||||||||||    
T  23949592 aaaggccgccacatccagcaataacccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaac 23949503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 52082589 - 52082674
Alignment:
Q  30 caactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 115  Q
    ||||||||||||||| |||||||||   ||||||||||| |||  | ||||||||||| |||||||| ||||||||||| ||||||    
T  52082589 caactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagtt 52082674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 52092786 - 52092870
Alignment:
Q  31 aactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 115  Q
    |||||||||||||| ||||||||| | ||||||||||| |||  | || |||||||| |||||||| ||||||||||| ||||||    
T  52092786 aactctttgagatcacatacaatgtgtcatcatcaatttttgtctttgccaagttcaacacctccaatttggaaacttgaaagtt 52092870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 370
Target Start/End: Original strand, 23085137 - 23085305
Alignment:
Q  204 acatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaaaaaggccaccacacccaacaat 303  Q
    |||||| |||| |||| ||||||||| ||||||||||||| |  || |||||||| ||| |  |||||  ||||| ||||||||| || || ||| ||||    
T  23085137 acatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgcctcatccagcaat 23085236  T
Q  304 atactc--atatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaac 370  Q
    |  | |  ||||| |||||||||  |||||||||||| |||||||| || ||||| || ||||||||||    
T  23085237 aaccccccatatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttccaac 23085305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 370
Target Start/End: Original strand, 34390032 - 34390199
Alignment:
Q  204 acatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaaaaaggccaccacacccaacaat 303  Q
    |||||| |||| |||| ||||||||| ||||||||||||| | ||| |||||||| ||| |  ||| |  ||||| ||||||||| ||||| ||| ||||    
T  34390032 acatctcagcatgtaaggcatcacaagctccaatcttcttagtatagcctttgatccatctaccgtttgaatcacgaaaaaggccgccacatccagcaat 34390131  T
Q  304 -atactcatatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaac 370  Q
     |  | |||||| |||||||||  |||||||||||| |||||||| || ||| | || ||||||||||    
T  34390132 aacccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaac 34390199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 8187153 - 8187097
Alignment:
Q  59 atcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 115  Q
    |||||||| |||||  ||||||||||||| ||||||||||||||||| |||||||||    
T  8187153 atcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagtt 8187097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 1548487 - 1548430
Alignment:
Q  58 catcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 115  Q
    |||||||||| ||||  ||||||||||||| |||||||||||||| || |||||||||    
T  1548487 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagtt 1548430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 8184121 - 8184036
Alignment:
Q  30 caactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 115  Q
    |||||||||||||| ||||| | |||   |||||||| |||||  ||||||||||||| |||||| ||||| | ||||||||||||    
T  8184121 caactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagtt 8184036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 1519188 - 1519148
Alignment:
Q  75 tgtgacaagttcagcacctccagtttggaaacttcaaagtt 115  Q
    ||||||||||||| |||||| ||||||| ||||||||||||    
T  1519188 tgtgacaagttcaacacctctagtttgggaacttcaaagtt 1519148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 12102319 - 12102359
Alignment:
Q  75 tgtgacaagttcagcacctccagtttggaaacttcaaagtt 115  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  12102319 tgtgacaagttcaacacctccagtttgggaacttcaaagtt 12102359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 370
Target Start/End: Original strand, 34080972 - 34081132
Alignment:
Q  211 agcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaaaaaggccaccacacccaacaatatactc- 309  Q
    |||| |||| ||||||||| ||||||||||||| |  || |||||||| ||| |  |||||  ||||| |||||| || ||||| ||| |||||  | |     
T  34080972 agcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagaccgccacatccagcaataaccccc 34081071  T
Q  310 atatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaac 370  Q
    ||||| |||||||||  |||||||||||| |||||||| || ||| | || ||||||||||    
T  34081072 atatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaac 34081132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 41901626 - 41901542
Alignment:
Q  30 caactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagt 114  Q
    |||||||||||||||  ||| | |||  ||||||||| | |||  | ||||||||||| |||||||||||||| |||||||||||    
T  41901626 caactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 32267483 - 32267568
Alignment:
Q  30 caactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 115  Q
    |||||||||||||||  ||| | |||  ||||||||| | |||  |||||||||||||  ||||||| ||||| ||||||||||||    
T  32267483 caactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagtt 32267568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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