View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4977-Insertion-2 (Length: 960)

Name: NF4977-Insertion-2
Description: NF4977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4977-Insertion-2
NF4977-Insertion-2
[»] chr7 (9 HSPs)
chr7 (7-359)||(4172498-4172854)
chr7 (517-814)||(4172965-4173262)
chr7 (834-960)||(4173616-4173745)
chr7 (452-516)||(4172946-4173010)
chr7 (656-735)||(2545772-2545851)
chr7 (680-804)||(20146221-20146346)
chr7 (834-943)||(24832300-24832412)
chr7 (686-735)||(2547390-2547439)
chr7 (877-960)||(31443493-31443578)
[»] chr5 (9 HSPs)
chr5 (656-810)||(20058300-20058454)
chr5 (656-811)||(20064130-20064285)
chr5 (656-812)||(25951626-25951782)
chr5 (656-808)||(21165501-21165654)
chr5 (684-807)||(23209803-23209926)
chr5 (699-812)||(20713537-20713650)
chr5 (683-812)||(20061169-20061297)
chr5 (834-960)||(20058814-20058943)
chr5 (834-960)||(20064643-20064772)
[»] chr8 (4 HSPs)
chr8 (656-811)||(23539982-23540138)
chr8 (853-960)||(26136302-26136411)
chr8 (682-735)||(10662110-10662163)
chr8 (682-722)||(21302420-21302461)
[»] chr3 (7 HSPs)
chr3 (656-816)||(9033145-9033307)
chr3 (656-769)||(29614037-29614151)
chr3 (653-735)||(15687341-15687423)
chr3 (658-811)||(16242605-16242758)
chr3 (667-774)||(4765364-4765473)
chr3 (669-776)||(24698739-24698847)
chr3 (834-907)||(7148668-7148742)
[»] chr2 (2 HSPs)
chr2 (656-811)||(18929638-18929795)
chr2 (655-742)||(26651314-26651401)
[»] chr6 (6 HSPs)
chr6 (682-808)||(32784391-32784519)
chr6 (698-812)||(1176919-1177033)
chr6 (656-740)||(16177672-16177759)
chr6 (834-907)||(31126341-31126415)
chr6 (666-731)||(31125821-31125886)
chr6 (656-714)||(17525291-17525349)
[»] chr4 (3 HSPs)
chr4 (656-774)||(11362040-11362159)
chr4 (684-735)||(8141178-8141229)
chr4 (686-735)||(9408843-9408892)
[»] scaffold0264 (1 HSPs)
scaffold0264 (666-811)||(21190-21337)
[»] scaffold0555 (1 HSPs)
scaffold0555 (665-811)||(5339-5487)
[»] chr1 (5 HSPs)
chr1 (656-774)||(11013493-11013612)
chr1 (653-735)||(13232411-13232493)
chr1 (682-805)||(20146538-20146663)
chr1 (682-735)||(22619715-22619768)
chr1 (682-764)||(36571347-36571431)
[»] scaffold0161 (1 HSPs)
scaffold0161 (682-775)||(5275-5369)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 359
Target Start/End: Original strand, 4172498 - 4172854
Alignment:
Q  7 aaattttgttttggtgtatttcagaatttgattcagtttatagaccaacacattactcttatttttatattataattgcaacatgtaatgtgatgtaata 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4172498 aaattttgttttggtgtatttcagaatttgattcagtttatagaccaacacattactcttatttttatactataattgcaacatgtaatgtgatgtaata 4172597  T
Q  107 cactacgtgctaattttgtcaacctagagcgacaagatattattatactataattgcacatggaatatactacgaaacc--nnnnnnnnntgtaatataa 204  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||           ||||||||||    
T  4172598 cactacgtactaattttatcaacctagagcgacaagatattattatactataattgcacatggaatatactacgaacccaaaaaaaaacatgtaatataa 4172697  T
Q  205 tacaacaaagttttgtcaacatatagccccctaaattaacaatcaattagagtttgtt--nnnnnnnnnnnnnnnncaattagaagacatgatcgggtac 302  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||    
T  4172698 tacaaaaaagttttgtcaacatatagccccctaaattaacaatcaattagagtttgttcacaaaaaaaaaataaaaaaattagaagacatgatcgggtac 4172797  T
Q  303 tgataactctttatcaagaatgacttattagtgtcttttattgtcatcttagtctta 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4172798 tgataactctttatcaagaatgacttattagtgtcttttattgtcatcttagtctta 4172854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 517 - 814
Target Start/End: Original strand, 4172965 - 4173262
Alignment:
Q  517 ccagataattctttccattttatttgcattatttgttaagcttaataggttgatcatagttgagtggaaaagtacaataagtcactaagagcaactttgg 616  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  4172965 ccagataattctttccattttatttgcatcatttgttaagcttaataggttgatcatagttgagtggaaaagtacaataagtcactgagagcaacttttg 4173064  T
Q  617 ttatctttgtctggcgatcgtccgacgacgatttgtaactgttagctagtattttcacctaccttatttaatgtggtcaatattagttgacttttacttt 716  Q
    |||||||||| ||||| ||| | ||| |||||||||||||||||||| |||||||||||| |||||||||||||| |||| |||||||||||| || |||    
T  4173065 ttatctttgtttggcggtcgcctgaccacgatttgtaactgttagctggtattttcacctgccttatttaatgtgttcaacattagttgacttataattt 4173164  T
Q  717 tgcaggtatcaaagtctttccttcaatcaaaagagttcgacgagatgttggacctagcgtaaagagtctcgaaacattgaagttcgacaagatacata 814  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||    
T  4173165 tgcaggtatcaaagtatttccttcaatcaaaagagttcgacgagatgttggacctagcgtaaagagtcttgaagcattgaagttcaacaagatacata 4173262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 834 - 960
Target Start/End: Original strand, 4173616 - 4173745
Alignment:
Q  834 taatgcattaaaacctgtcaaa-gacgccacatagtctagtcttgttctttaagcaacctacgaactcgacgaac-aacaccaatagaatgcgc-acatg 930  Q
    |||||||||||||||||||||| |||||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||  |||||| | |||||    
T  4173616 taatgcattaaaacctgtcaaaagacgccacatggtctagtctcgttcgttaagcaacctacgaactcgacgaacaaacaccaaacgaatgcacaacatg 4173715  T
Q  931 tcataggatctctggcttggtccttcttgt 960  Q
    |  |||||||||||| ||||||||||||||    
T  4173716 tactaggatctctggattggtccttcttgt 4173745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 452 - 516
Target Start/End: Original strand, 4172946 - 4173010
Alignment:
Q  452 ggtaataatttctccctaaccagataattctttccattttatttgcatcatttgttaagcttaat 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4172946 ggtaataatttctccctaaccagataattctttccattttatttgcatcatttgttaagcttaat 4173010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 656 - 735
Target Start/End: Complemental strand, 2545851 - 2545772
Alignment:
Q  656 tgttagctagtattttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtcttt 735  Q
    |||||||| ||| |||||||  ||| ||||||||||||||| |||| |||||||||||| ||||||| ||| ||||||||    
T  2545851 tgttagctggtaatttcaccagcctcatttaatgtggtcaacattacttgacttttactcttgcaggaatcgaagtcttt 2545772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 804
Target Start/End: Complemental strand, 20146346 - 20146221
Alignment:
Q  680 ttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttccttcaatcaaaagag-ttcgacgagatgttggacctagcgtaa 778  Q
    |||| |||||||||||| ||||||||||||||||| ||  ||| ||| |||  ||||||||  | ||| ||| ||| |||||||||||||  |||| |||    
T  20146346 ttatgtaatgtggtcaacattagttgacttttactgttaaaggaatcgaagcttttccttctgttaaaggagtttcaacgagatgttggagttagcataa 20146247  T
Q  779 agagtctcgaaacattgaagttcgac 804  Q
    | ||||| ||| | ||||||||||||    
T  20146246 aaagtcttgaagccttgaagttcgac 20146221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 834 - 943
Target Start/End: Complemental strand, 24832412 - 24832300
Alignment:
Q  834 taatgcattaaaacctgtc-aaagacgccacatagtctagtcttgttctttaagcaacctacgaactcgacgaac-aacaccaatagaatgcgc-acatg 930  Q
    |||||||||||||| |||| ||||||||||||  |||| |||  |||| |||| |||||||||||||||| ||||  ||||||| | ||||| | |||||    
T  24832412 taatgcattaaaacttgtcgaaagacgccacacggtctcgtcccgttcgttaaacaacctacgaactcgatgaacgcacaccaacaaaatgcacaacatg 24832313  T
Q  931 tcataggatctct 943  Q
    || ||||||||||    
T  24832312 tcctaggatctct 24832300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 735
Target Start/End: Complemental strand, 2547439 - 2547390
Alignment:
Q  686 aatgtggtcaatattagttgacttttacttttgcaggtatcaaagtcttt 735  Q
    |||||| |||| ||||||||||||||||| ||||| | ||||||||||||    
T  2547439 aatgtgctcaacattagttgacttttactcttgcatgaatcaaagtcttt 2547390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 877 - 960
Target Start/End: Original strand, 31443493 - 31443578
Alignment:
Q  877 gttctttaagcaacctacgaactcgacgaac-aacaccaatagaatgcgc-acatgtcataggatctctggcttggtccttcttgt 960  Q
    |||| ||||||||||||||||||||| ||||  ||| ||| | ||||| | ||||||| |||||||||||  ||||||||||||||    
T  31443493 gttcgttaagcaacctacgaactcgatgaacgcacaacaacaaaatgcacaacatgtcctaggatctctgatttggtccttcttgt 31443578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 4e-53; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 656 - 810
Target Start/End: Original strand, 20058300 - 20058454
Alignment:
Q  656 tgttagctagtattttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttccttcaatcaaaagagttcg 755  Q
    ||||||||  ||||||||||  ||| |||||||||||||| |||||||||||||||||| ||||||| ||| |||||||| |||||||||||||||||||    
T  20058300 tgttagctgatattttcaccagcctcatttaatgtggtcagtattagttgacttttactcttgcaggaatcgaagtcttttcttcaatcaaaagagttcg 20058399  T
Q  756 acgagatgttggacctagcgtaaagagtctcgaaacattgaagttcgacaagata 810  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  20058400 acgagatgttggacctagcgtaaagagtcttgaagcattgaagttcgacaagata 20058454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 656 - 811
Target Start/End: Original strand, 20064130 - 20064285
Alignment:
Q  656 tgttagctagtattttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttccttcaatcaaaagagttcg 755  Q
    ||||||||  ||||||||||  |||  |||||||||||||| || |||||||||||||| ||||||| ||| |||||||| |||||||||||||||||||    
T  20064130 tgttagctgttattttcaccagcctcgtttaatgtggtcaacatcagttgacttttactcttgcaggaatcgaagtcttttcttcaatcaaaagagttcg 20064229  T
Q  756 acgagatgttggacctagcgtaaagagtctcgaaacattgaagttcgacaagatac 811  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||    
T  20064230 acgagatgttggacctagcgtaaaaagtctcgaagcattgaagttcgataagatac 20064285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 656 - 812
Target Start/End: Complemental strand, 25951782 - 25951626
Alignment:
Q  656 tgttagctagtattttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttccttcaatcaaaagagttcg 755  Q
    |||||||| |||||||||||  ||| ||||||||||||||| ||||||||||||||||| ||||| | |||||||||||| ||  ||||||| ||||||     
T  25951782 tgttagctggtattttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgcacgaatcaaagtcttttctctaatcaaaggagttca 25951683  T
Q  756 acgagatgttggacctagcgtaaagagtctcgaaacattgaagttcgacaagataca 812  Q
    |||| ||||||||  |||||| |||||| ||||| ||||||||||||||||||||||    
T  25951682 acgaaatgttggatttagcgtgaagagtttcgaagcattgaagttcgacaagataca 25951626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 656 - 808
Target Start/End: Complemental strand, 21165654 - 21165501
Alignment:
Q  656 tgttagctagtattttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttccttcaatcaaaagagttcg 755  Q
    |||||||||||||||| |||  ||| | ||||||||||||| ||||||||||||||||| ||||||| | | |||||||||||||||||||| |||||||    
T  21165654 tgttagctagtatttttaccagcctcacttaatgtggtcaacattagttgacttttactcttgcaggaagcgaagtctttccttcaatcaaaggagttcg 21165555  T
Q  756 acgagatgtt-ggacctagcgtaaagagtctcgaaacattgaagttcgacaaga 808  Q
    || ||| ||| || | ||| |||||||||||||||||||| | |||| ||||||    
T  21165554 acaagaagttggggcttagtgtaaagagtctcgaaacattaaggttcaacaaga 21165501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 684 - 807
Target Start/End: Original strand, 23209803 - 23209926
Alignment:
Q  684 ttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttccttcaatcaaaagagttcgacgagatgttggacctagcgtaaagagt 783  Q
    ||||||||||||| | ||||||||||||||| ||||||| ||| |||| ||| |||||| |||| ||||||||||||||||||||  ||||||| |||||    
T  23209803 ttaatgtggtcaacaatagttgacttttactcttgcaggaatcgaagtattttcttcaaacaaaggagttcgacgagatgttggatttagcgtagagagt 23209902  T
Q  784 ctcgaaacattgaagttcgacaag 807  Q
    ||| || |||||||||||||||||    
T  23209903 ctcaaagcattgaagttcgacaag 23209926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 699 - 812
Target Start/End: Complemental strand, 20713650 - 20713537
Alignment:
Q  699 ttagttgacttttacttttgcaggtatcaaagtctttccttcaatcaaaagagttcgacgagatgttggacctagcgtaaagagtctcgaaacattgaag 798  Q
    |||||||||||||| | ||||||| |||||||||||| ||||||||||| |||||||||||||| |||||| |||||| || |||||  || | |||| |    
T  20713650 ttagttgacttttattcttgcaggaatcaaagtcttttcttcaatcaaaggagttcgacgagatattggacttagcgttaaaagtcttaaagctttgagg 20713551  T
Q  799 ttcgacaagataca 812  Q
    ||||||||||||||    
T  20713550 ttcgacaagataca 20713537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 683 - 812
Target Start/End: Complemental strand, 20061297 - 20061169
Alignment:
Q  683 tttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttccttcaatcaaaagagttcgacgagatgttggacctagcgtaaagag 782  Q
    |||||| ||||||  ||||||||||||||||| ||||||| ||| |||| |||| |||||| ||| | ||||||||||||||||||| ||||||||||||    
T  20061297 tttaatatggtcaccattagttgacttttactcttgcaggaatcgaagtttttc-ttcaatgaaaggtgttcgacgagatgttggacttagcgtaaagag 20061199  T
Q  783 tctcgaaacattgaagttcgacaagataca 812  Q
    | |  || ||||||| || |||| ||||||    
T  20061198 tataaaagcattgaaatttgacatgataca 20061169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 834 - 960
Target Start/End: Original strand, 20058814 - 20058943
Alignment:
Q  834 taatgcattaaaacctgtc-aaagacgccacatagtctagtcttgttctttaagcaacctacgaactcgacgaac-aacaccaatagaatgcgc-acatg 930  Q
    ||||||||||||||||||| ||| ||||||||  |||| |||  |||| ||||| ||||||||||||||| ||||  ||| ||| | ||||| | |||||    
T  20058814 taatgcattaaaacctgtcgaaacacgccacacggtctcgtcccgttcgttaagaaacctacgaactcgatgaacgcacaacaacaaaatgcacaacatg 20058913  T
Q  931 tcataggatctctggcttggtccttcttgt 960  Q
    ||||||||||||||| ||||||||| ||||    
T  20058914 tcataggatctctggtttggtcctttttgt 20058943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 834 - 960
Target Start/End: Original strand, 20064643 - 20064772
Alignment:
Q  834 taatgcattaaaacctgtca-aagacgccacatagtctagtcttgttctttaagcaacctacgaactcgacgaac-aacaccaatagaatgcgc-acatg 930  Q
    |||||||||||||||||||  ||| |||||||  |||| ||| | ||| ||||||||||||||||||||| ||||  ||| ||||| ||||| | |||||    
T  20064643 taatgcattaaaacctgtcgtaagtcgccacacggtctcgtcctattcgttaagcaacctacgaactcgatgaacgcacaacaataaaatgcacaacatg 20064742  T
Q  931 tcataggatctctggcttggtccttcttgt 960  Q
    || ||| || ||||| || |||||||||||    
T  20064743 tcctagaatatctggttttgtccttcttgt 20064772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 8e-33; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 656 - 811
Target Start/End: Original strand, 23539982 - 23540138
Alignment:
Q  656 tgttagctagtattttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttccttcaatcaaaagag-ttc 754  Q
    |||||||| ||||| |||||  ||| ||||||||||||||||||||||||||||||||| ||||||   |  |||||||| ||||||||||| ||| |||    
T  23539982 tgttagctcgtattgtcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagtatttgaagtcttttcttcaatcaaaggagtttc 23540081  T
Q  755 gacgagatgttggacctagcgtaaagagtctcgaaacattgaagttcgacaagatac 811  Q
    ||||||||||||||| || |||||| |||||| || |||||||||| ||||||||||    
T  23540082 gacgagatgttggacttaacgtaaaaagtctcaaagcattgaagtttgacaagatac 23540138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 853 - 960
Target Start/End: Original strand, 26136302 - 26136411
Alignment:
Q  853 aaagacgccacatagtctagtcttgttctttaagcaacctacgaactcgacgaac-aacaccaatagaatgcgc-acatgtcataggatctctggcttgg 950  Q
    ||||||||||||  |||| ||||  ||| ||||||||||||||||||||| |||| |||||||| | ||||| | ||||||| |||||||||||| ||||    
T  26136302 aaagacgccacacggtctcgtctcattcgttaagcaacctacgaactcgatgaacgaacaccaacaaaatgcacaacatgtcctaggatctctggtttgg 26136401  T
Q  951 tccttcttgt 960  Q
    |||| |||||    
T  26136402 tcctgcttgt 26136411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 735
Target Start/End: Complemental strand, 10662163 - 10662110
Alignment:
Q  682 atttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtcttt 735  Q
    ||||||||||||||| ||||||||||||||||| |||||||  || ||||||||    
T  10662163 atttaatgtggtcaacattagttgacttttactcttgcaggactcgaagtcttt 10662110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 722
Target Start/End: Complemental strand, 21302461 - 21302420
Alignment:
Q  682 atttaatgtggtcaatatt-agttgacttttacttttgcagg 722  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  21302461 atttaatgtggtcaatatttagttgacttttaattttgcagg 21302420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 4e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 656 - 816
Target Start/End: Original strand, 9033145 - 9033307
Alignment:
Q  656 tgttagctagtattttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtc-tttccttcaatcaaaaga-gtt 753  Q
    |||||||| |||||||||||  ||| ||||||| ||||||| ||||||||||||||||| ||||||| ||  ||||| ||| | ||||| |||| |  ||    
T  9033145 tgttagctggtattttcaccagcctcatttaatatggtcaacattagttgacttttactcttgcaggaattgaagtctttttcctcaataaaaacatttt 9033244  T
Q  754 cgacgagatgttggacctagcgtaaagagtctcgaaacattgaagttcgacaagatacatagc 816  Q
    | |||| ||||||||  ||| || |||||||||||| |||||||||||||||||| |||||||    
T  9033245 caacgaaatgttggatttagtgtgaagagtctcgaagcattgaagttcgacaagacacatagc 9033307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 656 - 769
Target Start/End: Original strand, 29614037 - 29614151
Alignment:
Q  656 tgttagctagtattttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaag-tctttccttcaatcaaaagagttc 754  Q
    ||||||||  |||||||||   ||| ||||||||||||||||||||||||||||||||| ||||| | ||||||| | ||| |||||| | || ||||||    
T  29614037 tgttagctgctattttcactagcctcatttaatgtggtcaatattagttgacttttactcttgcatgaatcaaagtttttttcttcaaacgaaggagttc 29614136  T
Q  755 gacgagatgttggac 769  Q
    |||||||||| ||||    
T  29614137 gacgagatgtaggac 29614151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 653 - 735
Target Start/End: Complemental strand, 15687423 - 15687341
Alignment:
Q  653 aactgttagctagtattttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtcttt 735  Q
    ||||||||||| |||  ||||||  ||| ||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||    
T  15687423 aactgttagctggtaagttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgtaggaatcaaagtcttt 15687341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 658 - 811
Target Start/End: Original strand, 16242605 - 16242758
Alignment:
Q  658 ttagctagtattttcacctaccttatttaatgtggtcaatattagtt-gacttttacttttgcaggtatcaaagtctttccttcaatcaaaagag-ttcg 755  Q
    |||||| ||||||||| | |||| ||||||||||||||| ||||||| |||| ||||||||||||| | | |||||||| | ||||||||| ||| ||||    
T  16242605 ttagctggtattttcatcaacctcatttaatgtggtcaacattagttagactgttacttttgcaggaagcgaagtcttttcctcaatcaaaggagattcg 16242704  T
Q  756 acgagatgttggacctagcgtaaagagtctcgaaacattgaagttcgacaagatac 811  Q
     |||  |||||||| | || |||  |||||| || || ||||||| ||||||||||    
T  16242705 tcgaagtgttggacttggcataa--agtctcaaagcactgaagtttgacaagatac 16242758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 667 - 774
Target Start/End: Original strand, 4765364 - 4765473
Alignment:
Q  667 attttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaag-tctttccttcaatcaaaagag-ttcgacgagatgt 764  Q
    |||||||||  ||| |||||||||| |||| ||||||||||||||||| ||||||| ||| ||| | ||||||||||   || ||| |||||||| ||||    
T  4765364 attttcaccagcctcatttaatgtgatcaacattagttgacttttactcttgcaggaatcgaagttttttccttcaacttaaggagtttcgacgaaatgt 4765463  T
Q  765 tggacctagc 774  Q
    ||||| ||||    
T  4765464 tggacttagc 4765473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 669 - 776
Target Start/End: Original strand, 24698739 - 24698847
Alignment:
Q  669 tttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttccttcaatcaaaagag-ttcgacgagatgttgg 767  Q
    ||||||| |||| ||||||| | ||||| ||||||||||||||||| ||| ||| ||  |||||||| ||||||   || ||| |||||||||||||| |    
T  24698739 tttcaccaacctcatttaatttagtcaacattagttgacttttactattggaggaattgaagtcttttcttcaacataaggagtttcgacgagatgttag 24698838  T
Q  768 acctagcgt 776  Q
    || ||||||    
T  24698839 acttagcgt 24698847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 834 - 907
Target Start/End: Complemental strand, 7148742 - 7148668
Alignment:
Q  834 taatgcattaaaacctgtcaaa-gacgccacatagtctagtcttgttctttaagcaacctacgaactcgacgaac 907  Q
    |||||||||||||||||||||| || |||| |  |||| |||  |||| ||||||||||||||||||||| ||||    
T  7148742 taatgcattaaaacctgtcaaaagatgccatacggtctcgtcccgttcgttaagcaacctacgaactcgatgaac 7148668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 656 - 811
Target Start/End: Complemental strand, 18929795 - 18929638
Alignment:
Q  656 tgttagctagtattttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttccttcaatcaaaagag-ttc 754  Q
    |||||||| ||||||||||| |||| |||||||||||| || ||||||||||||||||| ||||||| ||  |||| ||| | ||||| ||| ||| |||    
T  18929795 tgttagctggtattttcaccaacctcatttaatgtggtgaacattagttgacttttactcttgcaggaattgaagtattttcctcaattaaaggagtttc 18929696  T
Q  755 gacgagatgttggacctagcgt-aaagagtctcgaaacattgaagttcgacaagatac 811  Q
    ||| |||| |||||| |||| | ||| ||||||||| | || ||||||||||||||||    
T  18929695 gacaagattttggacttagcatgaaaaagtctcgaatccttaaagttcgacaagatac 18929638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 655 - 742
Target Start/End: Complemental strand, 26651401 - 26651314
Alignment:
Q  655 ctgttagctagtattttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttccttcaa 742  Q
    ||||||||  ||| |||||||  ||| ||||||||||||||||||||||||||||||||| ||||||  ||| |||| ||| ||||||    
T  26651401 ctgttagcaggtaatttcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagaaatcgaagttttttcttcaa 26651314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 2e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 682 - 808
Target Start/End: Complemental strand, 32784519 - 32784391
Alignment:
Q  682 atttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtc-tttccttcaatcaaaagagttcgacgagatgtt-ggacctagcgtaaa 779  Q
    |||||||||||| ||||||||||||||||||||||| |||| ||  || || ||| || |||||||  ||||||||| ||||||| || | |||||||||    
T  32784519 atttaatgtggttaatattagttgacttttacttttacaggaattgaaatctttttctacaatcaatggagttcgacaagatgttggggcttagcgtaaa 32784420  T
Q  780 gagtctcgaaacattgaagttcgacaaga 808  Q
    |||||||||| || ||| |||||||||||    
T  32784419 gagtctcgaagcactgaggttcgacaaga 32784391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 698 - 812
Target Start/End: Original strand, 1176919 - 1177033
Alignment:
Q  698 attagttgacttttacttttgcaggtatcaaagtctttccttcaatcaaaagagttcgacgagatgttggacctagcgtaaagagtctcgaaacattgaa 797  Q
    ||||||||||||||||| ||||||| ||| || ||||| ||||||| ||| |||||| |||||||||||||  |||  |||  |||||| || | |||||    
T  1176919 attagttgacttttactcttgcaggaatcgaaatcttttcttcaataaaaggagttcaacgagatgttggatttagtataagaagtctcaaagctttgaa 1177018  T
Q  798 gttcgacaagataca 812  Q
    |||||||||||||||    
T  1177019 gttcgacaagataca 1177033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 656 - 740
Target Start/End: Complemental strand, 16177759 - 16177672
Alignment:
Q  656 tgttagctagtattttcacctac---cttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttccttc 740  Q
    |||||||| |||||||||||| |   || |||||||||||| || ||||||||||||||||| ||| ||| |||||||||||| ||||    
T  16177759 tgttagctggtattttcacctccagcctcatttaatgtggttaacattagttgacttttactcttgtaggaatcaaagtcttttcttc 16177672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 834 - 907
Target Start/End: Original strand, 31126341 - 31126415
Alignment:
Q  834 taatgcattaaaacctgtc-aaagacgccacatagtctagtcttgttctttaagcaacctacgaactcgacgaac 907  Q
    |||||||||||||||| || ||||||||||||  |||| |||  |||| ||||||||||||||||||||| ||||    
T  31126341 taatgcattaaaacctatcgaaagacgccacacggtcttgtccagttcgttaagcaacctacgaactcgatgaac 31126415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 666 - 731
Target Start/End: Original strand, 31125821 - 31125886
Alignment:
Q  666 tattttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagt 731  Q
    ||||||||||  ||| ||||||||||||||| ||||||||||||||||| || |||  ||||||||    
T  31125821 tattttcaccatcctcatttaatgtggtcaacattagttgacttttactcttacagaaatcaaagt 31125886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 656 - 714
Target Start/End: Complemental strand, 17525349 - 17525291
Alignment:
Q  656 tgttagctagtattttcacctaccttatttaatgtggtcaatattagttgacttttact 714  Q
    |||||||| ||| |||||||   || ||||||||||||||| |||||||||||||||||    
T  17525349 tgttagctggtaatttcaccagtctcatttaatgtggtcaacattagttgacttttact 17525291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 656 - 774
Target Start/End: Complemental strand, 11362159 - 11362040
Alignment:
Q  656 tgttagctagtattttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttccttcaatcaaaagag-ttc 754  Q
    |||||||| |||||||||||  ||| |||||| |||||||| ||||||||||||||||| ||||||||||  |||||||| ||||||   || ||| |||    
T  11362159 tgttagctggtattttcaccagcctcatttaaagtggtcaacattagttgacttttactcttgcaggtattgaagtcttttcttcaacttaaggagtttc 11362060  T
Q  755 gacgagatgttggacctagc 774  Q
     |||||||||||||| ||||    
T  11362059 aacgagatgttggacttagc 11362040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 735
Target Start/End: Complemental strand, 8141229 - 8141178
Alignment:
Q  684 ttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtcttt 735  Q
    |||| |||||||||||| |||||||||||  |||||||| ||||||||||||    
T  8141229 ttaaagtggtcaatatttgttgacttttatctttgcaggaatcaaagtcttt 8141178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 735
Target Start/End: Original strand, 9408843 - 9408892
Alignment:
Q  686 aatgtggtcaatattagttgacttttacttttgcaggtatcaaagtcttt 735  Q
    |||||||| || |||||||||||||||  |||||||| ||||||||||||    
T  9408843 aatgtggttaacattagttgacttttatctttgcaggaatcaaagtcttt 9408892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 666 - 811
Target Start/End: Complemental strand, 21337 - 21190
Alignment:
Q  666 tattttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttc-cttcaatcaaaagagtt-cgacgagatg 763  Q
    ||||||||||  ||| ||||||| || |||| ||| ||||||||||| ||||||| | ||| |||  |||  |||||| | |||||||| ||||||||||    
T  21337 tattttcaccatcctcatttaatatgatcaacatttgttgacttttatttttgcaagaatcgaagcatttttcttcaaccgaaagagtttcgacgagatg 21238  T
Q  764 ttggacctagcgtaaagagtctcgaaacattgaagttcgacaagatac 811  Q
    ||||||  ||| ||||||| ||| |||| |||||||||||||||||||    
T  21237 ttggactaagcataaagagcctcaaaaccttgaagttcgacaagatac 21190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 665 - 811
Target Start/End: Original strand, 5339 - 5487
Alignment:
Q  665 gtattttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttccttcaa-tcaaaagagttcgacgagatg 763  Q
    |||||||||||  ||| ||||| |||||||||  |||||||||||||||| ||||||||||| |||| ||| | |||| | || |   ||||||||||||    
T  5339 gtattttcaccagcctcatttattgtggtcaactttagttgacttttactcttgcaggtatcgaagttttttcatcaattgaagaattttcgacgagatg 5438  T
Q  764 ttggacctagcgt-aaagagtctcgaaacattgaagttcgacaagatac 811  Q
    |||||| |||| | ||| ||||||||| | ||| ||||||||| |||||    
T  5439 ttggacttagcatcaaaaagtctcgaagccttgcagttcgacaggatac 5487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 656 - 774
Target Start/End: Original strand, 11013493 - 11013612
Alignment:
Q  656 tgttagctagtattttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttccttcaatcaaaagag-ttc 754  Q
    |||||||| ||| ||||| |  ||| ||||||||||||||| ||||| | ||||||||| ||||||| ||| |||||||| ||||||   || ||| |||    
T  11013493 tgttagctggtaatttcatcagcctcatttaatgtggtcaacattagcttacttttactcttgcaggaatcgaagtcttttcttcaacttaaggagtttc 11013592  T
Q  755 gacgagatgttggacctagc 774  Q
    ||||||||||||||| ||||    
T  11013593 gacgagatgttggacttagc 11013612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 653 - 735
Target Start/End: Original strand, 13232411 - 13232493
Alignment:
Q  653 aactgttagctagtattttcacctaccttatttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtcttt 735  Q
    ||||||||| | ||| ||| ||| |||||||||||||||||||| |||||||||||||||  || ||| | ||||||||||||    
T  13232411 aactgttaggtggtaatttgaccaaccttatttaatgtggtcaacattagttgacttttatcttagcaagaatcaaagtcttt 13232493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 805
Target Start/End: Complemental strand, 20146663 - 20146538
Alignment:
Q  682 atttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttccttcaatcaaaagag-ttcgacgagatgttggacctagc-gtaaa 779  Q
    ||||||||||| ||| ||||||| ||| ||||| ||||||| ||| ||||||||   ||||||  | ||| |||||||||||||||||| ||||  | ||    
T  20146663 atttaatgtggccaacattagttaactattactcttgcaggaatcgaagtcttttactcaatcgtaggagtttcgacgagatgttggacttagcattgaa 20146564  T
Q  780 gagtctcgaaacattgaagttcgaca 805  Q
     ||||||||| | |||||||||||||    
T  20146563 aagtctcgaagccttgaagttcgaca 20146538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 735
Target Start/End: Original strand, 22619715 - 22619768
Alignment:
Q  682 atttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtcttt 735  Q
    ||||||||||||||| |||||||||||||||  |||||||| ||| ||||||||    
T  22619715 atttaatgtggtcaacattagttgacttttatctttgcaggaatcgaagtcttt 22619768  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 764
Target Start/End: Original strand, 36571347 - 36571431
Alignment:
Q  682 atttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtc--tttccttcaatcaaaagagttcgacgagatgt 764  Q
    ||||||||| ||||| |||||||||||||||  |||||| | ||| |||||  |||||| |||   |||||||||||||||||||    
T  36571347 atttaatgtagtcaacattagttgacttttatctttgcatgaatcgaagtctttttcctacaacttaaagagttcgacgagatgt 36571431  T

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Target: scaffold0161 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 682 - 775
Target Start/End: Complemental strand, 5369 - 5275
Alignment:
Q  682 atttaatgtggtcaatattagttgacttttacttttgcaggtatcaaagtctttccttcaatcaaaagag-ttcgacgagatgttggacctagcg 775  Q
    ||||||||||||||| |||||||||||||||  || ||||| |||||||||||| ||||||   || ||| ||| |||||||||||||| |||||    
T  5369 atttaatgtggtcaacattagttgacttttatcttcgcaggaatcaaagtcttttcttcaacttaaggagcttcaacgagatgttggacttagcg 5275  T

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