View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4977-Insertion-3 (Length: 818)
Name: NF4977-Insertion-3
Description: NF4977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4977-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 8 - 818
Target Start/End: Original strand, 40859218 - 40860032
Alignment:
| Q |
8 |
cttttcattttgtggtggtagtgtaagtgaacattgtgcattgtagctaaggggggatttagcccccacttagttagttatatatatgtttctcttatct |
107 |
Q |
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| T |
40859218 |
cttttcattttgtggtggtagtgtaagtgaacattgtgcattgtagctaaggggggatttagcccccacttagttagttatatatatgtttctcttatct |
40859317 |
T |
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| Q |
108 |
tgtgaccaataaatggcaaaagatatttatgtataatgatacttgttttagaaatgattgtaatattttttagtttatttctgtatttccccgtgcgtat |
207 |
Q |
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| T |
40859318 |
tgtgaccaataaatggcaaaagatatttatgtataatgatacttgttttagaaatgattataatattttttagtttatttctgtatttccccgtgcgtat |
40859417 |
T |
|
| Q |
208 |
ccattttatgatgttttttgggcacgaatatactacaacttttcctatatataagaccccattctgaaattgctcatatatagttattgagcttctattt |
307 |
Q |
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| T |
40859418 |
ccattttatgatgttttttggtcacgaatatattacaacttttcctatatataagaccccattctgaaattgctcatatatagttattgagcttctattt |
40859517 |
T |
|
| Q |
308 |
aagctc-----ata-----tatagttatctacaatagcacaagtttactttaacaaattatactcaccaaaactacaacagtattctgttgcaaacttac |
397 |
Q |
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|||||| ||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40859518 |
aagctcaccagataagtcttaaaaccatctacaatagcacaagtttactttaacaaattatactcaccaaaactacaacagtattctgttgcaaacttac |
40859617 |
T |
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| Q |
398 |
aaggtaaaaatattaccccagtaattgtaagttgtagggaagctaagtaatcagtcttcttaccttcatttgagaagttggctatattaattatagccca |
497 |
Q |
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| T |
40859618 |
aaggtaaaaatattaccccagtaattgtaagttgtagggaagctaagtaatcagtcttcttaccttcatttgagaagttggctat-----ttatagccca |
40859712 |
T |
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| Q |
498 |
agttttagatagtgctacctcccactttcaaaaccatttctacttattttcgcttccctctcattcttaccgatccttcataaatatccctaagtttatc |
597 |
Q |
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| T |
40859713 |
agttttagatagtgctacctcccactttcaaaaccatttctacttattttcgcttccctctcattcttaccgatccttcataaat--------------- |
40859797 |
T |
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| Q |
598 |
acaaccctattaacttcgtatattttacaaaaacttttagaaaacaagtggcacccaaattcccaannnnnnnatattaaacttattcacttgttgcatt |
697 |
Q |
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| T |
40859798 |
---tcccaattaacttcgtatattttac-aaaacttttagaaaacaagtggcacccaaattcccaatttttttatattaaacttcttcacttgttgcatt |
40859893 |
T |
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| Q |
698 |
aattcaataccaaggcaccctgttaggtaaccatt------------------tatgtgtaataatcggaatccgaaaaaagtgtcagaatttaatcagt |
779 |
Q |
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| T |
40859894 |
aattcaataccaaggcaccctgttaggtaaccatttatgatttcaaaaccttgtatgtgtaataatcggaatctgaaaaaagtgtcagaatttaatcagt |
40859993 |
T |
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| Q |
780 |
taaaatataactttaatgatgcaaagttaacgaaccttg |
818 |
Q |
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| T |
40859994 |
taaaatataactttaatgatgcaaagttaacgaaccttg |
40860032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 36935931 - 36935984
Alignment:
| Q |
208 |
ccattttatgatgttttttgggcacgaatatactacaacttttcctatatataa |
261 |
Q |
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| T |
36935931 |
ccattttatgatgttttttgggcacaaatataccacatcccttcctatgtataa |
36935984 |
T |
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