View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4977-Insertion-5 (Length: 497)
Name: NF4977-Insertion-5
Description: NF4977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4977-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 12 - 469
Target Start/End: Original strand, 48020336 - 48020791
Alignment:
| Q |
12 |
aaaccaaagtttaaaactttatcacaaacgaaaaatgggtattacatgaaaagcaaattacaacaaaatgggtgacttacgccatgaaggtgagctccta |
111 |
Q |
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| T |
48020336 |
aaaccaaagtttaaaactttatcacaaacgaaaaatgggtattacatgaaaagcaaattacaacaaaatgggttacttacgccatgaaggtgagctccta |
48020435 |
T |
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| Q |
112 |
acacagcaatcaacagtaagttgttctttgacaggatgaggttgaaaatgatcaactttaccactttcaccagctgccattgtttctctttcactctgtt |
211 |
Q |
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| T |
48020436 |
acacagcaatcaacagtaagttgttctttgacaggatgaggttgaaaatgatcaactttaccactttcaccagctgccattgtttctctttcactctgtt |
48020535 |
T |
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| Q |
212 |
tttcttaggcaatgtttctagttatagagcagagaataaaaagaaggtgagtgtactattttctagagagagaaagagtggaaatgatgaggaagttggc |
311 |
Q |
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| T |
48020536 |
tttcttaggcaatgtttctagttatagagcagagaataaaaagaaggtgagtgtactattttctagagagagaaagagtggaaatgatgaggaagttggc |
48020635 |
T |
|
| Q |
312 |
aggaacgttgtgactataaggagatgttttttgcaaatgagaaatgtgtcattatggtttgtttggttggtactcctaattccaatactcccactacttc |
411 |
Q |
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| T |
48020636 |
aggaacgttgtgactataaggagatgttttttgcaaatgagaaatgtgtcattatggtttgtttggttggtactcctaattccaatactaccactacttc |
48020735 |
T |
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| Q |
412 |
tttgnnnnnnnctattgtcctgaatccttaatccttaataatcctatgttgttttgtt |
469 |
Q |
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| T |
48020736 |
tttgttttgtctttttctattg--tccttaatccttaataatcctatgttgttttgtt |
48020791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 464 - 497
Target Start/End: Original strand, 48020803 - 48020836
Alignment:
| Q |
464 |
tttgttcttacaagggtcaaatggtcaattgttg |
497 |
Q |
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| T |
48020803 |
tttgttcttacaagggtcaaatggtcaattgttg |
48020836 |
T |
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