View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4977-Insertion-6 (Length: 404)
Name: NF4977-Insertion-6
Description: NF4977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4977-Insertion-6 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 404
Target Start/End: Complemental strand, 4544196 - 4543796
Alignment:
| Q |
8 |
gttttggtgtgtgggcactgttgccgtgttctaggagatggattttgaggcttgggtatgcgcagttaggcttaataaggaactggtacttatggcagtg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4544196 |
gttttggtgtgtgggcactgttgccgtgttctaggagatggattttgaggcttgggtatgcacagttaggcttagtaaggaactggtacttatggcagtg |
4544097 |
T |
|
| Q |
108 |
cttataggctgttacttaggttgcttt-cttattttccttggttgcatacattagcatcaggattatgttaattggggtattagtgttgagcctttttct |
206 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4544096 |
cttataggctgttacttacgttgcttttcttattttccttggttgcatacattagcatcaggattatgttaattggtgtattagtgttgagcctttttct |
4543997 |
T |
|
| Q |
207 |
tggccatggtggtgttttggtgtttcgtatatatgcggcaccttttgtatgtttcgctcttttcgtttttatccgcgaggggtacggctttttgtacaac |
306 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4543996 |
tgggcatggtggtgttttggtgttccgtatatatgcggcaccttttgtatgtttcgctcttttcgtttttatccgcgaggggtacggctttttgtacaac |
4543897 |
T |
|
| Q |
307 |
tcaacatgaataaattttcactgatt---nnnnnnnnnnggattcacaactagcagagtagtagcctgttgggagtagttgtttattcatgtagtagtgt |
403 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4543896 |
tcaacatgaataaattttcactgattaaaaaaaaaaaaaggattcacaactagcagagtagtagcctgttgggagtagttgtttattcatgtagtagtgt |
4543797 |
T |
|
| Q |
404 |
a |
404 |
Q |
| |
|
| |
|
|
| T |
4543796 |
a |
4543796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 130 - 282
Target Start/End: Complemental strand, 905874 - 905725
Alignment:
| Q |
130 |
gctttcttattttccttggttgcatacattagcatcaggattatgttaattggggtattagtgttgagcctttttcttggccatggtggtgttttggtgt |
229 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| |||| || ||||| ||||||| | |||| |||||||||| || |||| | ||||||||| |
|
|
| T |
905874 |
gctttcctattttccttggttgcatacactagcatcat-attaccttt-ttgggttattagtatggagcttttttcttgggcaaggtgat-ttttggtgt |
905778 |
T |
|
| Q |
230 |
ttcgtatatatgcggcaccttttgtatgtttcgctcttttcgtttttatccgc |
282 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
905777 |
accgtatatatgcggtaccttttgtatgtttctttcttttcgtttttatccgc |
905725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 130 - 297
Target Start/End: Complemental strand, 8607514 - 8607351
Alignment:
| Q |
130 |
gctttcttattttccttggttgcatacattagcatcaggattatgttaattggggtattagtgttgagcctttttcttggccatggtggtgttttggtgt |
229 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| | ||| || | ||| ||||||| | |||| |||||||||| || |||||| ||||||||| |
|
|
| T |
8607514 |
gctttcctattttccttggttgcatacactagcatcatg-ttacctttct-gggttattagtatggagcttttttcttgggcaaggtggt-ttttggtgt |
8607418 |
T |
|
| Q |
230 |
ttcgtatatatgcggcaccttttgtatgtttcgctcttttcgtttttatccgcgaggggtacggcttt |
297 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||| ||||||||||| || |||| |||||| |
|
|
| T |
8607417 |
accgtatatatgcggcacctttt-tatgtttcgttcttttcatttttatccgcaagtggtatggcttt |
8607351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 19873460 - 19873554
Alignment:
| Q |
214 |
ggtggtgttttggtgtttcgtatatatgcggcaccttttgtatgtttcgctcttttcgtttttatccgcgaggggtacggctttttgtacaactc |
308 |
Q |
| |
|
|||||| |||||||| | || ||||||||| |||||||||||||| |||| | |||||||||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
19873460 |
ggtggttttttggtgctccgcctatatgcggtaccttttgtatgttccgctttattcgtttttatccgcgagcggtaccgcttcttgtacaactc |
19873554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 45032594 - 45032691
Alignment:
| Q |
227 |
tgtttcgtatatatgcggcaccttttgtatgtttcgctcttttcgtttttatccgcgaggggtacggctttttgtacaactcaacatgaataaatttt |
324 |
Q |
| |
|
|||| ||||||||||||||||||||||||| | ||| || | ||||||||||||||||| || | |||||||||||||| || |||||||||||| |
|
|
| T |
45032594 |
tgttccgtatatatgcggcaccttttgtatatcccgcatttattgtttttatccgcgagggttatagttttttgtacaactcgacgtgaataaatttt |
45032691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 43818198 - 43818263
Alignment:
| Q |
237 |
atatgcggcaccttttgtatgtttcgctcttttcgtttttatccgcgaggggtacggctttttgta |
302 |
Q |
| |
|
||||| ||||||| || | ||||||||| ||||||| |||||| |||| |||||||||||||||| |
|
|
| T |
43818198 |
atatgtggcacctgttatttgtttcgcttttttcgtatttatctgcgaccggtacggctttttgta |
43818263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 40582339 - 40582303
Alignment:
| Q |
220 |
gttttggtgtttcgtatatatgcggcaccttttgtat |
256 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
40582339 |
gttttggtgttccgtatatatgcggcaccttgtgtat |
40582303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University