View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4977_high_4 (Length: 237)
Name: NF4977_high_4
Description: NF4977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4977_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4172282 - 4172505
Alignment:
| Q |
1 |
ctttggttgatggaatttgaagaattgaaactaagtttgaaagagtaattggtttgccatgattgtagataatagttggtatgtccatttcaactgacca |
100 |
Q |
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| T |
4172282 |
ctttggttgatggaatttgaagaattgaaactaagtttgaaagagtaattggtttgccatgattgtagataatagttggtatgtccatttcaactgacca |
4172381 |
T |
|
| Q |
101 |
tttaagagacatggaatctatgaaagcatacatgtttttgtataatagagcttgtgctttgaaaatttcacttgctttacggttatttattgaagaagcc |
200 |
Q |
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| T |
4172382 |
tttaagagacatggaatctatgaaagcatacatgtttttgtataatagagcttgtgctttgaaaatttcacttgctttacggttatttattgaagaagcc |
4172481 |
T |
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| Q |
201 |
atacacctgcaaatgaaaattttg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
4172482 |
atacacctgcaaatgaaaattttg |
4172505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 4159720 - 4159519
Alignment:
| Q |
1 |
ctttggttgatggaatttgaagaattgaaactaagtttgaaagagtaattggtttgccatgattgtagataatagttggtatgtccatttcaactgacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||| |||||| |
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| T |
4159720 |
ctttggttgatggaatttgaagaattgaaactaagtttgaaagagtaattggtttgccatgattgtggataatatttggtatgttcatctcaattgacca |
4159621 |
T |
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| Q |
101 |
tttaagagacatggaatctatgaaagcatacatgtttttgtataatagagcttgtgctttgaaaatttcacttgctttacggttatttattgaagaagcc |
200 |
Q |
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| T |
4159620 |
tttcagagacatagaatctacaaaggcatacatgtttttgtataataaagcttgtgctttaaaaatttcacttggttttcggttattgattgatgaagcc |
4159521 |
T |
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| Q |
201 |
at |
202 |
Q |
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|| |
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| T |
4159520 |
at |
4159519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 4177898 - 4178063
Alignment:
| Q |
9 |
gatggaatttgaagaattgaaactaagtttgaaagagtaattggtttgccatgattgtagataatagttggtatgtccatttcaactgaccatttaagag |
108 |
Q |
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||||||| |||||||||||||||||| |||||||| | |||||||||||||||||||| |||||| ||||||||| ||||||||| | ||||||||||| |
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| T |
4177898 |
gatggaacttgaagaattgaaactaaatttgaaagtgaaattggtttgccatgattgtgaataatatttggtatgttcatttcaacagcccatttaagag |
4177997 |
T |
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| Q |
109 |
acatggaatctatgaaagcatacatgtttttgtataatagagcttgtgctttgaaaatttcacttg |
174 |
Q |
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| T |
4177998 |
acatggaatctatgaaggcaaatatgtgtttgtataataaagcttgtgccttgaaaatttcacttg |
4178063 |
T |
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