View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4977_low_1 (Length: 547)
Name: NF4977_low_1
Description: NF4977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4977_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Complemental strand, 4172280 - 4171744
Alignment:
| Q |
1 |
cgataatgtgcagcgtctcatgcgtctccttgcacacaatggattctttgagatagtaacgaatcaagaattggaaaatgaagaagaagcttatgctctc |
100 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4172280 |
cgataacgtgcagcgtctcatgcgtctccttgcacacaatggattctttgagatagtaacgaatcaagaattggaaaatgaagaagaagcttatgctctc |
4172181 |
T |
|
| Q |
101 |
acagttacttcagagcttcttgttaaagggactgaactttgtttagctccaatggttgagtgtgttcttgatcctaaatttaatgtttcatttcatagtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4172180 |
acagttacttcagagcttcttgttaaagggactgaactttgtttagctccaatggttgagtgtgttcttgatcctaaatttaatgtttcatttcataatt |
4172081 |
T |
|
| Q |
201 |
tgaagaagtggattaatgaggaagatctcaccctctttgctacctctttaggatgtgatttatgggagtttcttaacaaaaatcctgattataatagatt |
300 |
Q |
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| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4172080 |
tcaagaagtggatttatgaggaagatctcaccctctttgctacctctttaggatgtgatttatgggagtttcttaacaaaaatcctgaatataatagatt |
4171981 |
T |
|
| Q |
301 |
gttcaatgatgctatggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggagttggattcaattgtggatgttggt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4171980 |
gttcaatgatgctatggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggggttggattcaattgtggatgttggt |
4171881 |
T |
|
| Q |
401 |
ggtggaaatggaacaactggtaagattatttgtgagacatttcctaagttgagatgtattgtttttgatcgtccaaaggttgtagagaatttatgtggaa |
500 |
Q |
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| T |
4171880 |
ggtggaaatggaacaactggtaagattatttgtgagacatatcctaagttgagatgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaa |
4171781 |
T |
|
| Q |
501 |
ataacaatttgacatatgttggtggggacatgttcat |
537 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |
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| T |
4171780 |
gtaacaatttgacatatgtcggtggggacatgttcat |
4171744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Original strand, 4159722 - 4160258
Alignment:
| Q |
1 |
cgataatgtgcagcgtctcatgcgtctccttgcacacaatggattctttgagatagtaacgaatcaagaattggaaaatgaagaagaagcttatgctctc |
100 |
Q |
| |
|
|||||| |||||||||||||||||| ||| |||||||||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||| |
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| T |
4159722 |
cgataacgtgcagcgtctcatgcgttacctcgcacacaatggattctttgagataattacaaatcaagaattagaaaatgaagaagaagcttatgctctc |
4159821 |
T |
|
| Q |
101 |
acagttacttcagagcttcttgttaaagggactgaactttgtttagctccaatggttgagtgtgttcttgatcctaaatttaatgtttcatttcatagtg |
200 |
Q |
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|| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||| |
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| T |
4159822 |
actgttgcttcagagcttcttgttaaaggaactgaactttgtttagctccaatggttgagtgtgttcttgatccaacactttcaacttcatttcataact |
4159921 |
T |
|
| Q |
201 |
tgaagaagtggattaatgaggaagatctcaccctctttgctacctctttaggatgtgatttatgggagtttcttaacaaaaatcctgattataatagatt |
300 |
Q |
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| ||||| ||| || |||||||||||||||| || |||||| | |||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||| |
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| T |
4159922 |
taaagaaatgggtttatgaggaagatctcactctatttgctgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacatt |
4160021 |
T |
|
| Q |
301 |
gttcaatgatgctatggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggagttggattcaattgtggatgttggt |
400 |
Q |
| |
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| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||| |
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| T |
4160022 |
atacaatgatgctttggctagtgattccaaaatgattaatttggcaatgaaagattgcaatttggtgtttgaggggttggaatcaattgtggatgttggt |
4160121 |
T |
|
| Q |
401 |
ggtggaaatggaacaactggtaagattatttgtgagacatttcctaagttgagatgtattgtttttgatcgtccaaaggttgtagagaatttatgtggaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4160122 |
ggtggaaatggaacaactggtaagattatttgtgagacatttcctaagttgacttgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaa |
4160221 |
T |
|
| Q |
501 |
ataacaatttgacatatgttggtggggacatgttcat |
537 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
4160222 |
gtaacaatttgacatatgttggtggggacatgttcat |
4160258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 80 - 536
Target Start/End: Complemental strand, 4177824 - 4177368
Alignment:
| Q |
80 |
gaagaagaagcttatgctctcacagttacttcagagcttcttgttaaagggactgaactttgtttagctccaatggttgagtgtgttcttgatcctaaat |
179 |
Q |
| |
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|||||||| ||||||||||||| ||| |||||||||||||||||| ||| | ||| ||||||||||| |||||||||||||||||||||||||| | |
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| T |
4177824 |
gaagaagagtcttatgctctcactgttgcttcagagcttcttgttagaggtagtgatctttgtttagcaccaatggttgagtgtgttcttgatccaactc |
4177725 |
T |
|
| Q |
180 |
ttaatgtttcatttcatagtgtgaagaagtggattaatgaggaagatctcaccctctttgctacctctttaggatgtgatttatgggagtttcttaacaa |
279 |
Q |
| |
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|| | ||| | |||| ||||||| |||||| ||||||||||||| || ||||||| | ||||||| | || ||| ||||| |||||| | || |
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| T |
4177724 |
tttcgggttcgtatcatgagctgaagaaatggatttatgaggaagatcttacactctttggtgttactttagggtctggtttttgggattttcttgataa |
4177625 |
T |
|
| Q |
280 |
aaatcctgattataatagattgttcaatgatgctatggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggagttg |
379 |
Q |
| |
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||||||||| |||||||||| || |||||||| |||||||||||||| ||| |||| || |||||||||| |||||| ||||||||||||| | ||| |
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| T |
4177624 |
aaatcctgaatataatagatcatttaatgatgcaatggctagtgattctaaattgataaacttggcattgagagattgtgattttgtgtttgatggattg |
4177525 |
T |
|
| Q |
380 |
gattcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacatttcctaagttgagatgtattgtttttgatcgtccaaagg |
479 |
Q |
| |
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|| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| ||||||||| |||||| | ||| | | |
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| T |
4177524 |
gaatcaattgtggatgttggtggtggaaatggaaccactggtaaaattatttgtgagacttttcctaagttgaaatgtattgtgtttgataggccacaag |
4177425 |
T |
|
| Q |
480 |
ttgtagagaatttatgtggaaataacaatttgacatatgttggtggggacatgttca |
536 |
Q |
| |
|
|||||||||| |||| ||||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
4177424 |
ttgtagagaacttatctggaagcaataatttgacttatgttggtggggacatgttca |
4177368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 485
Target Start/End: Original strand, 34343521 - 34343695
Alignment:
| Q |
311 |
gctatggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggagttggattcaattgtggatgttggtggtggaaatg |
410 |
Q |
| |
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||||||||||||||||| ||||| | |||||||| |||||| |||| | | |||||||| | | | ||||| |||||||||||||||||||||| || |
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| T |
34343521 |
gctatggctagtgattctcaaatggtgaatttggctttgaaaaattgtagtaaggtgtttgaagggattgattctattgtggatgttggtggtggaactg |
34343620 |
T |
|
| Q |
411 |
gaacaactggtaagattatttgtgagacatttcctaagttgagatgtattgtttttgatcgtccaaaggttgtag |
485 |
Q |
| |
|
|||| || | || ||||| |||||| | ||||||||||||| |||| |||||| ||||| |||| ||||||||| |
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|
| T |
34343621 |
gaaccacagctagaattatatgtgaggcttttcctaagttgaaatgtgttgtttatgatcttccacaggttgtag |
34343695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 386 - 468
Target Start/End: Original strand, 34330989 - 34331071
Alignment:
| Q |
386 |
attgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacatttcctaagttgagatgtattgtttttga |
468 |
Q |
| |
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||||||||||||||||||||||||||||| || | ||| ||||| |||||| | ||||||||| | | |||| |||||||||| |
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| T |
34330989 |
attgtggatgttggtggtggaaatggaacgacggctaaaattatatgtgaggcttttcctaaggtcaaatgtcttgtttttga |
34331071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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