View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4977_low_2 (Length: 307)
Name: NF4977_low_2
Description: NF4977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4977_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 136 - 295
Target Start/End: Original strand, 4426915 - 4427070
Alignment:
| Q |
136 |
taactatttacccttttcaccaccaccgtcttcaagatcaagaagacaaaagccttgtttcctttcaagtttagaattcccctttccttaataacctccc |
235 |
Q |
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| T |
4426915 |
taactatttacccttttcaccaccaccgtcttcaagatcaagaagacaaaagccttgtttcctttcaagtttagaattcccctttccttaataacctccc |
4427014 |
T |
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| Q |
236 |
tatcctaacccatatcatttgtctgtctgtctctctataacagacctcgtacattgcctt |
295 |
Q |
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| T |
4427015 |
tatcctaacccatctcatt----tgtctgtctctctataacagacctcgtacattgcctt |
4427070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 4426836 - 4426914
Alignment:
| Q |
19 |
attttaagctgacactctcatcttccccttctcattccataatctgctagcttttatctctcattctcctcccatttta |
97 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4426836 |
attttaagctgacactctcatcttccgcttctcattccataatctgctagcttttatctctcattctcctcccatttta |
4426914 |
T |
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