View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4977_low_6 (Length: 220)
Name: NF4977_low_6
Description: NF4977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4977_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 38001450 - 38001669
Alignment:
| Q |
1 |
gacaccaaaaatcttaaaacctgtccaggccgttttattgtcattctcccaaaggttcaaaattctcttctttcaaatgctccatggagttataacaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38001450 |
gacaccaaaaatcttaaaacctgtccaggccgttttattgtcattctcccaaaggttcaaaattctcttctttcaaatgctccatggagttataacaaaa |
38001549 |
T |
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| Q |
101 |
atgatcgaatggtgtatgtggaattgttttgtacctnnnnnnnnntgctataagtagcgaaatgctatatatcagacattcttttccgctattttggttt |
200 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38001550 |
atgatcgaatggtctatgtggaattgttttgtacctaaaaaaaaatgctataagtagcgaaatgctatatatcagacattcttttccgctattttggttt |
38001649 |
T |
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| Q |
201 |
atttgtgtcgttttgttttc |
220 |
Q |
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||||||||||||||||||| |
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| T |
38001650 |
ttttgtgtcgttttgttttc |
38001669 |
T |
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