View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4978-Insertion-1 (Length: 1072)
Name: NF4978-Insertion-1
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4978-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 575; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 22 - 727
Target Start/End: Original strand, 7582787 - 7583495
Alignment:
| Q |
22 |
attatacaccaccaaagaatcaacttgctacttaac-gccttacattgaaattccacacatacttcaaaccttcctaaaccctaaaagtttcaccaaata |
120 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
7582787 |
attatacaccgccaaagaatcaacttgctacttaaccgcctcacattgaaattccacacatacttcaaaccttcataaaccctaaaagcttcaccaaata |
7582886 |
T |
|
| Q |
121 |
aacattgcatttttccaagaattcattcctcccttgccaagtaaaacattagacaccgccaaggaatcaactttcagcttaaccacctcacatcgaaatt |
220 |
Q |
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| T |
7582887 |
aacattgtatttttccaagaattcattcttcccttgccaagtaaaacattagacaccgccaaggaatcaacttgcagcttaaccacctcacatcgaaatt |
7582986 |
T |
|
| Q |
221 |
ccacacatacttcaaaccttcgtaaaccctgaaagctgccaaataaacattgcatttttccaagaattcattcctcccttgccaagtaaaacattagaca |
320 |
Q |
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| T |
7582987 |
ccacacatacttcaaaccttcgtaaaccctgaaagctgccaaataaacattgcgtttttcgaagaattcattcctcccttgccaagtaaaacattagaca |
7583086 |
T |
|
| Q |
321 |
ccgccaaggaatcaacttgcagcttaaccacctcacatcgaaattccacacatgcttcaaaccttcgtaaaccttgaaagctgccaaataaacattgcag |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7583087 |
ccgccaaggaatcaacttgcagcttaaccacctcacatcgaaattccacacatacttcaaaccttcgtaaaccctgaaagctgccaaataaacattgcag |
7583186 |
T |
|
| Q |
421 |
ttttctaaaaaatttattcctcccttaccaccaaggaatcaacttgcagcttaaccgcttcacagcgaaattccacacatactttaaatcttcacaaact |
520 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7583187 |
ttttct-gaaaatttattcctcccttaccaccaaggaatcaacttgcagcttaaccgcttcacagcgaaattccacacatactttaaatcttcacaaatt |
7583285 |
T |
|
| Q |
521 |
ccaaaagttttcccaaataaacatcgagttttccaagaatttagaaaaacccacttatccactccctactatccccatgtataaggccgccacagcctgc |
620 |
Q |
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| T |
7583286 |
ccaaaagttttaccaaatcaacatcgagttttccaagaatttagaaaaacccacttatccactccctactatccccatgtataaggccgccacagcctgc |
7583385 |
T |
|
| Q |
621 |
ttgtatatatttggccttcgactatactag---nnnnnnnnnnncttgaatatgtgagactatttaaaagtttttggttagaagactatttaaaagttgt |
717 |
Q |
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|||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7583386 |
ttgtgtatatttggccttcgattatactagtttttttttttttttttgaatatgtgagactatttaaaagtttttggttagaagactatttaaaagttgt |
7583485 |
T |
|
| Q |
718 |
ttaccaacgg |
727 |
Q |
| |
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|||||||||| |
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| T |
7583486 |
ttaccaacgg |
7583495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 7582930 - 7583211
Alignment:
| Q |
18 |
aaacattatacaccaccaaagaatcaacttgctacttaa-cgccttacattgaaattccacacatacttcaaaccttcctaaaccctaaaagtttcacca |
116 |
Q |
| |
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|||||||| ||||| |||| |||||||||||| ||||| | ||| |||| ||||||||||||||||||||||||||| |||||||| |||| | ||| |
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| T |
7582930 |
aaacattagacaccgccaaggaatcaacttgcagcttaaccacctcacatcgaaattccacacatacttcaaaccttcgtaaaccctgaaagct--gcca |
7583027 |
T |
|
| Q |
117 |
aataaacattgcatttttccaagaattcattcctcccttgccaagtaaaacattagacaccgccaaggaatcaactttcagcttaaccacctcacatcga |
216 |
Q |
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| T |
7583028 |
aataaacattgcgtttttcgaagaattcattcctcccttgccaagtaaaacattagacaccgccaaggaatcaacttgcagcttaaccacctcacatcga |
7583127 |
T |
|
| Q |
217 |
aattccacacatacttcaaaccttcgtaaaccctgaaagctgccaaataaacattgcatttttccaagaattcattcctccctt |
300 |
Q |
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| T |
7583128 |
aattccacacatacttcaaaccttcgtaaaccctgaaagctgccaaataaacattgcagttttctgaaaatttattcctccctt |
7583211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 755 - 1052
Target Start/End: Original strand, 7583523 - 7583832
Alignment:
| Q |
755 |
caactcaactaattcatcttttttacatgttaatgatcaatttaaatattgnnnnnnnn---acctccttctaagtctttacttgtttggagaatgatgc |
851 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7583523 |
caactcaactaattcatcttttttacatgttaatgatcaatttaaatattgtttttttttttacctccttctaagtctttacttgtttggagaatgatgt |
7583622 |
T |
|
| Q |
852 |
tagacaagcttcccacatatgaaatcttagcctctatagggtgcaatctcccctc-atatgctctttatgtcgtgctaaagaag-atcttcttttca-ct |
948 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| || |
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| T |
7583623 |
tagacaagcttcccacatatgaaatcttagcttctatagggtgcaatctcccctcaatgtgctctttatgtcgtgctaaagaagaatcttcttttcacct |
7583722 |
T |
|
| Q |
949 |
tttctttg-atg-tgatatgctgtc-aaatttggagatgg-ttgcttccattcttaattgt-acctccatttcc-atctagagatgacatctggtccata |
1042 |
Q |
| |
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|||||||| ||| ||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||| || |||||||||||||||||| ||| |
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| T |
7583723 |
tttctttgaatgttgatatgctatcaaaatttggagatggtttgcttccattcttaattgtaacctccatttccaatatagagatgacatctggtctata |
7583822 |
T |
|
| Q |
1043 |
tgtcagaaac |
1052 |
Q |
| |
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|||||||||| |
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| T |
7583823 |
tgtcagaaac |
7583832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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