View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4978-Insertion-11 (Length: 515)

Name: NF4978-Insertion-11
Description: NF4978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4978-Insertion-11
NF4978-Insertion-11
[»] chr5 (12 HSPs)
chr5 (8-273)||(40544006-40544284)
chr5 (346-415)||(40543634-40543702)
chr5 (8-66)||(31788616-31788674)
chr5 (8-65)||(32031957-32032014)
chr5 (473-515)||(40543760-40543802)
chr5 (220-287)||(7734015-7734084)
chr5 (8-67)||(37511995-37512054)
chr5 (10-60)||(42841513-42841563)
chr5 (374-410)||(3165454-3165490)
chr5 (220-281)||(11131469-11131532)
chr5 (10-62)||(40548363-40548415)
chr5 (220-281)||(43008255-43008318)
[»] chr1 (6 HSPs)
chr1 (220-287)||(11066915-11066984)
chr1 (222-281)||(29068512-29068572)
chr1 (230-287)||(15716995-15717054)
chr1 (220-281)||(34342472-34342535)
chr1 (249-287)||(14486924-14486962)
chr1 (379-411)||(27926878-27926910)
[»] chr8 (4 HSPs)
chr8 (371-415)||(26930054-26930098)
chr8 (377-414)||(21306990-21307027)
chr8 (371-415)||(10865030-10865074)
chr8 (371-415)||(26536585-26536629)
[»] scaffold0583 (1 HSPs)
scaffold0583 (371-414)||(876-919)
[»] chr4 (5 HSPs)
chr4 (220-287)||(17942612-17942681)
chr4 (371-415)||(25987713-25987757)
chr4 (220-279)||(21392986-21393047)
chr4 (371-415)||(23431505-23431549)
chr4 (10-56)||(37894942-37894988)
[»] chr3 (9 HSPs)
chr3 (220-287)||(4846528-4846597)
chr3 (220-287)||(49757948-49758016)
chr3 (371-415)||(3266762-3266806)
chr3 (377-410)||(28370583-28370616)
chr3 (377-410)||(28378405-28378438)
chr3 (377-410)||(28386223-28386256)
chr3 (377-410)||(28391490-28391523)
chr3 (220-281)||(4862379-4862442)
chr3 (371-415)||(19419973-19420017)
[»] chr7 (6 HSPs)
chr7 (379-415)||(2275025-2275061)
chr7 (220-281)||(25611023-25611086)
chr7 (379-415)||(39779255-39779291)
chr7 (374-411)||(20055834-20055871)
chr7 (231-281)||(32349474-32349526)
chr7 (220-281)||(2766420-2766483)
[»] chr6 (2 HSPs)
chr6 (371-415)||(13083403-13083447)
chr6 (220-287)||(22793148-22793216)
[»] chr2 (4 HSPs)
chr2 (371-415)||(34576234-34576278)
chr2 (220-287)||(43442321-43442388)
chr2 (220-281)||(4552514-4552577)
chr2 (371-415)||(7929383-7929427)
[»] scaffold1246 (1 HSPs)
scaffold1246 (371-415)||(2200-2244)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 40544284 - 40544006
Alignment:
Q  8 gtttcaaagatttaatagggagttttgatagaatagagaaggcaacatcatcgtgaatataacatccacttacaatgtcactgctacaggaattggaagc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40544284 gtttcaaagatttaatagggagttttgatagaatagagaaggcaacatcatcgtgaatataacatccacttacaatgtcactgctacaggaattggaagt 40544185  T
Q  108 catcgaatgaatacaggagctcagattagattaccaaagtttgttgaagaaccgcgatattgttttgtatagggttggggagagcgagagaaactattat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40544184 catcgaatgaatacaggagctcagattagattaccaaagtttgttgaagaaccgcgatattgttttgtatagggttggggagagcgagagaaactattat 40544085  T
Q  208 atacactctg-----------tctatagaaattttgcgtgtaaattaaaaac--tattttatataaacattttgatata 273  Q
    ||||||||||           | ||||||||||||| |||||||||||||||  ||||||||||||||||||| |||||    
T  40544084 atacactctgtggttaagaattttatagaaattttgagtgtaaattaaaaacaatattttatataaacattttaatata 40544006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 346 - 415
Target Start/End: Original strand, 40543634 - 40543702
Alignment:
Q  346 gtactagtgaaaagattggtccgtcttccgttctttttactgcgttaaaatttgaaaattatgaactatg 415  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  40543634 gtactagtgaaaagattggtccg-cttccgttctttttactgcgttaaaatttgaatattatgaactatg 40543702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 31788674 - 31788616
Alignment:
Q  8 gtttcaaagatttaatagggagttttgatagaatagagaaggcaacatcatcgtgaata 66  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  31788674 gtttcaaagatttaatggggagttttgatagaatagagaaggcaatatcatcgtgaata 31788616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 32032014 - 32031957
Alignment:
Q  8 gtttcaaagatttaatagggagttttgatagaatagagaaggcaacatcatcgtgaat 65  Q
    |||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||||||    
T  32032014 gtttcaaagatttaatggggagttttaatagaatagagaaggcaatatcttcgtgaat 32031957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 473 - 515
Target Start/End: Original strand, 40543760 - 40543802
Alignment:
Q  473 ctagttacaacaaatcaaattaaacatgattaatctatttcaa 515  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  40543760 ctagttacagcaaatcaaattaaacatgattaatctatttcaa 40543802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 7734015 - 7734084
Alignment:
Q  220 tatagaaattttgcgtgtaaattaaaaa--ctattttatataaacattttgatatagattaaaagtataa 287  Q
    |||||||||||||||||||||||| |||   |||||||||||||   ||||||||||||||||| |||||    
T  7734015 tatagaaattttgcgtgtaaattacaaatgatattttatataaaatatttgatatagattaaaattataa 7734084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 37512054 - 37511995
Alignment:
Q  8 gtttcaaagatttaatagggagttttgatagaatagagaaggcaacatcatcgtgaatat 67  Q
    ||||||||||||| | ||| |||||||||| ||| ||||||||||  |||||||||||||    
T  37512054 gtttcaaagatttgagaggcagttttgataaaatggagaaggcaatgtcatcgtgaatat 37511995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 42841513 - 42841563
Alignment:
Q  10 ttcaaagatttaatagggagttttgatagaatagagaaggcaacatcatcg 60  Q
    |||||||||| ||||||||||||||| |||||| ||||| ||| |||||||    
T  42841513 ttcaaagattcaatagggagttttgagagaatatagaagacaatatcatcg 42841563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 410
Target Start/End: Complemental strand, 3165490 - 3165454
Alignment:
Q  374 cgttctttttactgcgttaaaatttgaaaattatgaa 410  Q
    ||||||||||||||||||||  |||||||||||||||    
T  3165490 cgttctttttactgcgttaacgtttgaaaattatgaa 3165454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 11131469 - 11131532
Alignment:
Q  220 tatagaaattttgcgtgtaaattaaaaac--tattttatataaacattttgatatagattaaaa 281  Q
    |||| ||| ||||||||||||||| ||||  |||||| ||||||| |||||||||| |||||||    
T  11131469 tataaaaaatttgcgtgtaaattacaaacaatattttgtataaactttttgatatatattaaaa 11131532  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 40548415 - 40548363
Alignment:
Q  10 ttcaaagatttaatagggagttttgatagaatagagaaggcaacatcatcgtg 62  Q
    ||||||||||||| ||| |||||| ||||||| || ||||||| |||||||||    
T  40548415 ttcaaagatttaacaggaagtttttatagaatggaaaaggcaatatcatcgtg 40548363  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 43008255 - 43008318
Alignment:
Q  220 tatagaaattttgcgtgtaaattaaaaac--tattttatataaacattttgatatagattaaaa 281  Q
    |||| |||||||| |||||||||| ||||  |||||||||||||  ||||||||| ||||||||    
T  43008255 tatataaattttgtgtgtaaattacaaacaatattttatataaattttttgatattgattaaaa 43008318  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 11066915 - 11066984
Alignment:
Q  220 tatagaaattttgcgtgtaaattaaaaac--tattttatataaacattttgatatagattaaaagtataa 287  Q
    |||||||||||||||||||||||| ||||  |||||||||||||  |||||||||||||||||| |||||    
T  11066915 tatagaaattttgcgtgtaaattacaaacaatattttatataaattttttgatatagattaaaattataa 11066984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 29068512 - 29068572
Alignment:
Q  222 tagaaattttgcgtgtaaattaaaaactat-tttatataaacattttgatatagattaaaa 281  Q
    ||||||||||| |||||||||| |||| || |||||||||| |||||||||||||||||||    
T  29068512 tagaaattttgtgtgtaaattacaaacgatatttatataaatattttgatatagattaaaa 29068572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 15717054 - 15716995
Alignment:
Q  230 ttgcgtgtaaattaaaaac--tattttatataaacattttgatatagattaaaagtataa 287  Q
    |||||||||||||| ||||  |||||||||||||  |||||||||||||||||| |||||    
T  15717054 ttgcgtgtaaattacaaacaatattttatataaattttttgatatagattaaaattataa 15716995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 34342535 - 34342472
Alignment:
Q  220 tatagaaattttgcgtgtaaattaaaaac--tattttatataaacattttgatatagattaaaa 281  Q
    |||| ||||||||||||||||||| ||||  |||||||||||||  || |||||||||||||||    
T  34342535 tatataaattttgcgtgtaaattacaaacgatattttatataaattttctgatatagattaaaa 34342472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 14486924 - 14486962
Alignment:
Q  249 tattttatataaacattttgatatagattaaaagtataa 287  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  14486924 tattttatataaatattttgatatagattaaaattataa 14486962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 411
Target Start/End: Original strand, 27926878 - 27926910
Alignment:
Q  379 tttttactgcgttaaaatttgaaaattatgaac 411  Q
    |||||||||||||||| ||||||||||||||||    
T  27926878 tttttactgcgttaaagtttgaaaattatgaac 27926910  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 26930098 - 26930054
Alignment:
Q  371 ttccgttctttttactgcgttaaaatttgaaaattatgaactatg 415  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  26930098 ttccgctctttttactgcgttaaaatttgaaaattatgaactatg 26930054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 21306990 - 21307027
Alignment:
Q  377 tctttttactgcgttaaaatttgaaaattatgaactat 414  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  21306990 tctttttactgcgctaaaatttgaaaattatgaactat 21307027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 10865030 - 10865074
Alignment:
Q  371 ttccgttctttttactgcgttaaaatttgaaaattatgaactatg 415  Q
    ||||| ||||||||||| | |||||||||||||||||||||||||    
T  10865030 ttccgctctttttactgtgataaaatttgaaaattatgaactatg 10865074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 26536629 - 26536585
Alignment:
Q  371 ttccgttctttttactgcgttaaaatttgaaaattatgaactatg 415  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||    
T  26536629 ttccgctctttttactgcactaaaatttgaaaattatgaactatg 26536585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 414
Target Start/End: Original strand, 876 - 919
Alignment:
Q  371 ttccgttctttttactgcgttaaaatttgaaaattatgaactat 414  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  876 ttccgctctttttactgcgttaaaatttgaaaattatgaactat 919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 17942681 - 17942612
Alignment:
Q  220 tatagaaattttgcgtgtaaattaaaaac--tattttatataaacattttgatatagattaaaagtataa 287  Q
    ||||||||||||| |||||||||| ||||  ||||||||||||| |||||||| |||||||||| |||||    
T  17942681 tatagaaattttgtgtgtaaattacaaacgatattttatataaaaattttgatgtagattaaaattataa 17942612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 25987757 - 25987713
Alignment:
Q  371 ttccgttctttttactgcgttaaaatttgaaaattatgaactatg 415  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||    
T  25987757 ttccgctctttttactgcgctaaaatttgaaaattatgaactatg 25987713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 21392986 - 21393047
Alignment:
Q  220 tatagaaattttgcgtgtaaattaaaaac--tattttatataaacattttgatatagattaa 279  Q
    |||||||||||||||||||||||| ||||  |||||||||||||  |||| |||||||||||    
T  21392986 tatagaaattttgcgtgtaaattacaaacaatattttatataaatttttttatatagattaa 21393047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 23431505 - 23431549
Alignment:
Q  371 ttccgttctttttactgcgttaaaatttgaaaattatgaactatg 415  Q
    ||||| ||||||||||||| ||||||||||||||||| |||||||    
T  23431505 ttccgctctttttactgcgctaaaatttgaaaattataaactatg 23431549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 37894988 - 37894942
Alignment:
Q  10 ttcaaagatttaatagggagttttgatagaatagagaaggcaacatc 56  Q
    ||||||||||| | ||||||||| |||||||| ||||||||||||||    
T  37894988 ttcaaagatttgagagggagtttggatagaatggagaaggcaacatc 37894942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 4846597 - 4846528
Alignment:
Q  220 tatagaaattttgcgtgtaaattaaaaac--tattttatataaacattttgatatagattaaaagtataa 287  Q
    |||||||||||||||||||||||| || |  ||||||||||||||  ||||||||||||||||| |||||    
T  4846597 tatagaaattttgcgtgtaaattacaaccgatattttatataaactctttgatatagattaaaattataa 4846528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 49757948 - 49758016
Alignment:
Q  220 tatagaaattttgcgtgtaaattaaaaac--tattttatataaacattttgatatagattaaaagtataa 287  Q
    |||||||||||||||||||||||| ||||  || ||||||||||  |||||||||||||||||| |||||    
T  49757948 tatagaaattttgcgtgtaaattacaaacgataatttatataaa-tttttgatatagattaaaattataa 49758016  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 3266762 - 3266806
Alignment:
Q  371 ttccgttctttttactgcgttaaaatttgaaaattatgaactatg 415  Q
    ||||||||||||||||||||||||| | | |||||||||||||||    
T  3266762 ttccgttctttttactgcgttaaaactcgtaaattatgaactatg 3266806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 28370616 - 28370583
Alignment:
Q  377 tctttttactgcgttaaaatttgaaaattatgaa 410  Q
    ||||||||| ||||||||||||||||||||||||    
T  28370616 tctttttaccgcgttaaaatttgaaaattatgaa 28370583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 28378438 - 28378405
Alignment:
Q  377 tctttttactgcgttaaaatttgaaaattatgaa 410  Q
    ||||||||| ||||||||||||||||||||||||    
T  28378438 tctttttaccgcgttaaaatttgaaaattatgaa 28378405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 28386256 - 28386223
Alignment:
Q  377 tctttttactgcgttaaaatttgaaaattatgaa 410  Q
    ||||||||| ||||||||||||||||||||||||    
T  28386256 tctttttaccgcgttaaaatttgaaaattatgaa 28386223  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 28391523 - 28391490
Alignment:
Q  377 tctttttactgcgttaaaatttgaaaattatgaa 410  Q
    ||||||||| ||||||||||||||||||||||||    
T  28391523 tctttttaccgcgttaaaatttgaaaattatgaa 28391490  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 4862442 - 4862379
Alignment:
Q  220 tatagaaattttgcgtgtaaattaaaaac--tattttatataaacattttgatatagattaaaa 281  Q
    |||||||||| ||||||||||||| || |  ||||||||| ||||  |||||||||||||||||    
T  4862442 tatagaaattctgcgtgtaaattacaacctatattttataaaaactctttgatatagattaaaa 4862379  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 19419973 - 19420017
Alignment:
Q  371 ttccgttctttttactgcgttaaaatttgaaaattatgaactatg 415  Q
    ||||| |||||||||| || ||| |||||||||||||||||||||    
T  19419973 ttccggtctttttactacgctaatatttgaaaattatgaactatg 19420017  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 415
Target Start/End: Original strand, 2275025 - 2275061
Alignment:
Q  379 tttttactgcgttaaaatttgaaaattatgaactatg 415  Q
    |||||||||||||||| ||||||||||||||||||||    
T  2275025 tttttactgcgttaaattttgaaaattatgaactatg 2275061  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 25611023 - 25611086
Alignment:
Q  220 tatagaaattttgcgtgtaaattaaaaa--ctattttatataaacattttgatatagattaaaa 281  Q
    |||||||||||||||||||||||| |||   |||||||||||||  ||||||||||||| ||||    
T  25611023 tatagaaattttgcgtgtaaattacaaatgatattttatataaattttttgatatagataaaaa 25611086  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 415
Target Start/End: Complemental strand, 39779291 - 39779255
Alignment:
Q  379 tttttactgcgttaaaatttgaaaattatgaactatg 415  Q
    ||||||||||| |||||||||||||||||||||||||    
T  39779291 tttttactgcgctaaaatttgaaaattatgaactatg 39779255  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 411
Target Start/End: Complemental strand, 20055871 - 20055834
Alignment:
Q  374 cgttctttttactgcgttaaaatttgaaaattatgaac 411  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  20055871 cgttctttttattgcgttaatatttgaaaattatgaac 20055834  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 32349526 - 32349474
Alignment:
Q  231 tgcgtgtaaattaaaaac--tattttatataaacattttgatatagattaaaa 281  Q
    ||||||||||||| ||||  |||||||||||||  ||||||||||||||||||    
T  32349526 tgcgtgtaaattacaaacaatattttatataaattttttgatatagattaaaa 32349474  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 2766483 - 2766420
Alignment:
Q  220 tatagaaattttgcgtgtaaattaaaaac--tattttatataaacattttgatatagattaaaa 281  Q
    |||||||||||||  ||||||||| ||||  |||||||||||||  ||||||||||||| ||||    
T  2766483 tatagaaattttgattgtaaattacaaacgatattttatataaattttttgatatagataaaaa 2766420  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 13083403 - 13083447
Alignment:
Q  371 ttccgttctttttactgcgttaaaatttgaaaattatgaactatg 415  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||||    
T  13083403 ttccgctctttttattgccttaaaatttgaaaattatgaactatg 13083447  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 22793148 - 22793216
Alignment:
Q  220 tatagaaattttgcgtgtaaattaaaaac--tattttatataaacattttgatatagattaaaagtataa 287  Q
    |||||||||||  ||||||||||| ||||  |||||||||| || ||||||||||||||||||| |||||    
T  22793148 tatagaaattta-cgtgtaaattacaaacgatattttatatcaatattttgatatagattaaaattataa 22793216  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 34576234 - 34576278
Alignment:
Q  371 ttccgttctttttactgcgttaaaatttgaaaattatgaactatg 415  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||||    
T  34576234 ttccgctctttttactgcgctaaaatttgtaaattatgaactatg 34576278  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 43442321 - 43442388
Alignment:
Q  220 tatagaaattttgcgtgtaaattaaaaactattttatataaacattttgatatagattaaaagtataa 287  Q
    |||||||||||| ||||||||||| |||| || || |||| | |||||||||| |||||||| |||||    
T  43442321 tatagaaattttacgtgtaaattacaaacgatattttatataaattttgatattgattaaaattataa 43442388  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 4552577 - 4552514
Alignment:
Q  220 tatagaaattttgcgtgtaaattaaaaac--tattttatataaacattttgatatagattaaaa 281  Q
    |||||||||||| ||||||||||| ||||  |||||||||||||  |||| |||||||| ||||    
T  4552577 tatagaaattttccgtgtaaattacaaacgatattttatataaattttttaatatagataaaaa 4552514  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 7929383 - 7929427
Alignment:
Q  371 ttccgttctttttactgcgttaaaatttgaaaattatgaactatg 415  Q
    ||||| ||||||||||| ||||||| ||| |||||||||||||||    
T  7929383 ttccgctctttttactgtgttaaaacttgtaaattatgaactatg 7929427  T

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Target: scaffold1246 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1246
Description:

Target: scaffold1246; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 2200 - 2244
Alignment:
Q  371 ttccgttctttttactgcgttaaaatttgaaaattatgaactatg 415  Q
    ||||| |||||||| ||  ||||||||||||||||||||||||||    
T  2200 ttccgctctttttattgtcttaaaatttgaaaattatgaactatg 2244  T

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